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List of works by Pamela J. Green

A microRNA of infectious laryngotracheitis virus can downregulate and direct cleavage of ICP4 mRNA.

scientific article published on 12 January 2011

Abiotic stress-associated miRNAs: detection and functional analysis

scientific article published on January 2010

An expression atlas of rice mRNAs and small RNAs

scientific article

Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops.

scientific article published on 20 July 2018

Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.

scientific article

AtCCR4a and AtCCR4b are Involved in Determining the Poly(A) Length of Granule-bound starch synthase 1 Transcript and Modulating Sucrose and Starch Metabolism in Arabidopsis thaliana

scientific article published on 27 January 2015

AtPARN is an essential poly(A) ribonuclease in Arabidopsis

scientific article published in March 2004

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

scientific article

Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway.

scientific article published on 29 July 2005

Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage

scientific article

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

scientific article

Construction of small RNA cDNA libraries for deep sequencing

scientific article

Criteria for annotation of plant MicroRNAs

scientific article published on 12 December 2008

Deep sequencing of chicken microRNAs

scientific article

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Diamonds in the rough: mRNA-like non-coding RNAs

scientific article published on 28 April 2008

Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from deep sequencing of small RNAs and cleaved target RNAs

scientific article

Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

scientific article

Distinct extremely abundant siRNAs associated with cosuppression in petunia

scientific article published on 23 September 2009

Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

scholarly article

Elucidation of the small RNA component of the transcriptome

scientific article

Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories

scientific article

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

scientific article

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).

scientific article

Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

scientific article published on 28 July 2006

Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

scientific article published on 3 February 2010

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

scientific article

Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana.

scientific article published on 6 April 2015

Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells

scientific article

Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes

scientific article

Impact of transcriptional, ABA-dependent, and ABA-independent pathways on wounding regulation of RNS1 expression.

scientific article published on 8 July 2008

Induction of the arginine decarboxylase ADC2 gene provides evidence for the involvement of polyamines in the wound response in Arabidopsis

scientific article published in November 2002

Local and systemic wound-induction of RNase and nuclease activities in Arabidopsis: RNS1 as a marker for a JA-independent systemic signaling pathway

scientific article published in February 2002

MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).

scientific article

Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript

scientific article

Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage

scientific article

Methods for isolation of total RNA to recover miRNAs and other small RNAs from diverse species

scientific article published in January 2010

Methods for validation of miRNA sequence variants and the cleavage of their targets ⬇️

scientific article published on August 17, 2012

MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant

scientific article

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

scientific article

MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific

scientific article published on 28 March 2009

Murine Oviductosomes (OVS) microRNA profiling during the estrous cycle: Delivery of OVS-borne microRNAs to sperm where miR-34c-5p localizes at the centrosome

scientific article published in Scientific Reports

New Molecular Phenotypes in the dst Mutants of Arabidopsis Revealed by DNA Microarray Analysis

scientific article published in 2001

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

scientific article

Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).

scientific article published on 29 April 2016

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

scientific article

Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?

scientific article

Plant snoRNA database

scientific article

Prediction of novel miRNAs and associated target genes in Glycine max.

scientific article

RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4

scientific article published on 01 September 2019

RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

scientific article

Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs

scientific article

Role of RNA polymerase IV in plant small RNA metabolism

scientific article

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

scientific article

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

scientific article

Sequence conservation and differential expression of Marek's disease virus microRNAs

scientific article published on 8 October 2008

Suppression of LX ribonuclease in tomato results in a delay of leaf senescence and abscission.

scientific article published on 18 August 2006

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The RNA World: Identifying miRNA-Target RNA Pairs as Possible Missing Links in Multi-Network Models

The Rice Annotation Project Database (RAP-DB): 2008 update

scientific article

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

scientific article published on 27 January 2016

Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.

scientific article

XRN 5'→3' exoribonucleases: structure, mechanisms and functions.

scientific article published on 19 March 2013

mRNA Decay Machinery in Plants: Approaches and Potential Components

article

tRNA cleavage is a conserved response to oxidative stress in eukaryotes

scientific article published on 21 August 2008

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