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List of works by Sanghamitra Bandyopadhyay

A NMF based approach for integrating multiple data sources to predict HIV-1-human PPIs

scientific article

A New Feature Vector Based on Gene Ontology Terms for Protein-Protein Interaction Prediction

scientific article published on 20 April 2016

A New Path Based Hybrid Measure for Gene Ontology Similarity

scientific article published on January 2014

A New Symmetry Based Cluster Validity Index: Application to Satellite Image Segmentation

scientific article published in December 2006

A Scoring Scheme for Online Feature Selection: Simulating Model Performance Without Retraining

scientific article published on 21 January 2016

A Survey and Comparative Study of Statistical Tests for Identifying Differential Expression from Microarray Data

scientific article

A Survey of Multiobjective Evolutionary Algorithms for Data Mining: Part I

scientific article published in February 2014

A Survey of Multiobjective Evolutionary Clustering

scientific article published on 26 May 2015

A biologically inspired measure for coexpression analysis

scientific article published on July 2011

A high-throughput drug screen targeted to the 5'untranslated region of Alzheimer amyloid precursor protein mRNA.

scientific article published on 28 April 2006

A multiobjective approach for identifying protein complexes and studying their association in multiple disorders

scientific article published on 09 August 2015

A new Differential Evolution based Fuzzy Clustering for Automatic Cluster Evolution

scientific article published in March 2009

A new approach for combining knowledge from multiple coexpression networks of microRNAs

scientific article published on 7 March 2013

A novel biclustering approach to association rule mining for predicting HIV-1-human protein interactions

scientific article

A novel coherence measure for discovering scaling biclusters from gene expression data

scientific article published in October 2009

A novel measure for evaluating an ordered list

scientific article published in 2010

A parallel pairwise local sequence alignment algorithm

scientific article published on 10 April 2009

A review of in silico approaches for analysis and prediction of HIV-1-human protein-protein interactions

scientific article

A strong Nash stability based approach to minimum quasi clique partitioning

scientific article published in January 2014

A study of some fuzzy cluster validity indices, genetic clustering and application to pixel classification

scientific article published in October 2005

A weighted power framework for integrating multisource information: gene function prediction in yeast

scientific article published on 03 February 2012

Active site driven ligand design: an evolutionary approach

scientific article published in October 2005

Alzheimer's disease therapeutics targeted to the control of amyloid precursor protein translation: maintenance of brain iron homeostasis

scientific article

An Approach for the Ordering of Evaluation of Objectives in Multiobjective Optimization

scientific article published on 4 December 2012

An Improved Multi-objective Technique for Fuzzy Clustering with Application to IRS Image Segmentation

scientific article published in 2009

An evolutionary technique based on K-Means algorithm for optimal clustering in RN

scientific article published in October 2002

An improved algorithm for clustering gene expression data

scientific article

An interactive approach to multiobjective clustering of gene expression patterns

scientific article published on 28 September 2012

Analysis of microarray data using multiobjective variable string length genetic fuzzy clustering

scientific article published in May 2009

Analyzing large gene expression and methylation data profiles using StatBicRM: statistical biclustering-based rule mining

scientific article

Analyzing miRNA co-expression networks to explore TF-miRNA regulation

scientific article

Anti-apoptotic role of omega-3-fatty acids in developing brain: perinatal hypothyroid rat cerebellum as apoptotic model.

scientific article published on 5 March 2009

Arsenic attenuates Heparin-binding EGF-like growth factor/EGFR signalling that promotes matrix-metalloprotease-9-dependent astrocyte damage in the developing rat brain

scientific article published on 7 December 2017

Arsenic, Cadmium, and Lead Like Troglitazone Trigger PPARγ-Dependent Poly (ADP-Ribose) Polymerase Expression and Subsequent Apoptosis in Rat Brain Astrocytes

scientific article published on 10 March 2017

Attenuation of osteoclastogenesis and osteoclast function by apigenin

scientific article published on 29 April 2006

Bioeffects of microwave--a brief review

scientific article

Biological networks in Parkinson's disease: an insight into the epigenetic mechanisms associated with this disease

scientific article published on 12 September 2017

CDK5-induced p-PPARγ(Ser 112) downregulates GFAP via PPREs in developing rat brain: effect of metal mixture and troglitazone in astrocytes.

scientific article

CODC: a Copula-based model to identify differential coexpression

scientific article published on 19 June 2020

Calcium receptor expression and function in oligodendrocyte commitment and lineage progression: potential impact on reduced myelin basic protein in CaR-null mice

scientific article published in August 2008

Calcium-sensing receptor stimulates secretion of an interferon-gamma-induced monokine (CXCL10) and monocyte chemoattractant protein-3 in immortalized GnRH neurons

scientific article published in March 2007

Characterization of developmental neurotoxicity of As, Cd, and Pb mixture: synergistic action of metal mixture in glial and neuronal functions

scientific article published on 9 September 2010

Chronic cerebral hypoperfusion-induced impairment of Aβ clearance requires HB-EGF-dependent sequential activation of HIF1α and MMP9.

scientific article published on 15 July 2016

Clustering using Multi-objective Genetic Algorithm and its Application to Image Segmentation

scientific article published in October 2006

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell

scientific article

Colored Network Motif Analysis by Dynamic Programming Approach: An Application in Host-Pathogen Interaction Network

scientific article published on 17 June 2019

Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes

scientific article

Combining multiobjective fuzzy clustering and probabilistic ANN classifier for unsupervised pattern classification: Application to satellite image segmentation

scientific article published in June 2008

Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast

scientific article (publication date: February 2009)

Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study

scientific article published on 7 April 2015

Consensus Multiobjective Differential Crisp Clustering for Categorical Data Analysis

scientific article published in 2010

Correction to: Cypermethrin Stimulates GSK3β-Dependent Aβ and p-tau Proteins and Cognitive Loss in Young Rats: Reduced HB-EGF Signaling and Downstream Neuroinflammation as Critical Regulators

scientific article published on 01 November 2019

Correction: DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-Specific Study.

scientific article published on 30 December 2013

Cypermethrin Stimulates GSK3β-Dependent Aβ and p-tau Proteins and Cognitive Loss in Young Rats: Reduced HB-EGF Signaling and Downstream Neuroinflammation as Critical Regulators

scientific article published on 10 January 2015

Cypermethrin induces astrocyte apoptosis by the disruption of the autocrine/paracrine mode of epidermal growth factor receptor signaling.

scientific article published in November 2011

DNA barcoding to map the microbial communities: current advances and future directions

scientific article

DNA methylation patterns facilitate the identification of microRNA transcription start sites: a brain-specific study

scientific article

De novo design of potential RecA inhibitors using multi objective optimization

scientific article published on July 2012

Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

scientific article published on 22 January 2018

Development of the human cancer microRNA network

scientific article

Developmental exposure to As, Cd, and Pb mixture diminishes skeletal growth and causes osteopenia at maturity via osteoblast and chondrocyte malfunctioning in female rats.

scientific article published on 19 April 2013

Discovering Condition Specific Topological Pattern Changes in Coexpression Network: An Application to HIV-1 Progression

scientific article

Discovery of MicroRNA markers: An SVM-based multiobjective feature selection approach

scientific article published in April 2011

Diverse roles of extracellular calcium-sensing receptor in the central nervous system.

scientific article published on August 2010

Docosahexaenoic acid up-regulates both PI3K/AKT-dependent FABP7-PPARγ interaction and MKP3 that enhance GFAP in developing rat brain astrocytes

scientific article

Dynamic range-based distance measure for microarray expressions and a fast gene-ordering algorithm

scientific article published in June 2007

Effect of microwave irradiated Methanosarcina barkeri DSM-804 on biomethanation

scientific article published on 20 June 2005

Efficient Two-stage Fuzzy Clustering of Microarray Gene Expression Data

scientific article published in December 2006

Efficient prototype reordering in nearest neighbor classification

scientific article published in December 2002

Estrogen deficiency induces memory loss via altered hippocampal HB-EGF and autophagy

scientific article published on 01 January 2020

Event extraction from cancer genetics literature

article

Evolving coherent and non-trivial biclusters from gene expression data: An evolutionary approach

scientific article published in November 2008

Exploring the Genomic Roadmap and Molecular Phylogenetics Associated with MODY Cascades Using Computational Biology

scientific article

Exploring the Missing Links Between Dietary Habits and Diseases

scientific article published on 16 January 2017

Exposure to As, Cd and Pb-mixture impairs myelin and axon development in rat brain, optic nerve and retina

scientific article published on 14 May 2013

Exposure to As-, Cd-, and Pb-mixture induces Aβ, amyloidogenic APP processing and cognitive impairments via oxidative stress-dependent neuroinflammation in young rats

scientific article published on 6 October 2014

Expression of pituitary tumor transforming gene (PTTG) and its binding protein in human astrocytes and astrocytoma cells: function and regulation of PTTG in U87 astrocytoma cells

scientific article

FOGSAA: Fast Optimal Global Sequence Alignment Algorithm

scientific article

Feature selection using feature dissimilarity measure and density-based clustering: application to biological data

scientific article

Finding Bicliques in Digraphs: Application into Viral-Host Protein Interactome

scientific article published in 2011

Finding multiple coherent biclusters in microarray data using variable string length multiobjective genetic algorithm

scientific article

From the Cover: Arsenic Induces Hippocampal Neuronal Apoptosis and Cognitive Impairments via an Up-Regulated BMP2/Smad-Dependent Reduced BDNF/TrkB Signaling in Rats

scientific article published in September 2017

Functional expression of beta-chemokine receptors in osteoblasts: role of regulated upon activation, normal T cell expressed and secreted (RANTES) in osteoblasts and regulation of its secretion by osteoblasts and osteoclasts.

scientific article published on 17 February 2005

Fuzzy clustering of physicochemical and biochemical properties of amino acids

scientific article published on 13 October 2011

GOGA: GO-driven Genetic Algorithm-based fuzzy clustering of gene expression data

scientific article published in December 2010

GRF: A Greedy Rank Fusion Algorithm for Combining MicroRNA Target Orderings

scientific article published on 23 July 2013

Gene expression data analysis using multiobjective clustering improved with SVM based ensemble

scientific article

Gene expression data clustering using a multiobjective symmetry based clustering technique

scientific article

Gene ordering in partitive clustering using microarray expressions

scientific article published in August 2007

Genetic clustering for automatic evolution of clusters and application to image classification

scientific article published in June 2002

Genetic operators for combinatorial optimization in TSP and microarray gene ordering

article

Guest Editorial: Special Issue on Advances in Multiobjective Evolutionary Algorithms for Data Mining

scientific article published in February 2014

Hybrid evolutionary multiobjective fuzzy c-medoids clustering of categorical data

scientific article published in April 2013

Hypothyroidism Induces Interleukin-1-Dependent Autophagy Mechanism as a Key Mediator of Hippocampal Neuronal Apoptosis and Cognitive Decline in Postnatal Rats

scientific article published on 26 October 2020

IVGA3D: De novo ligand design using a variable sized tree representation

scientific article published in December 2010

Identifying Potential Gene Markers Using SVM Classifier Ensemble

scientific article published on 25 August 2010

Identifying significant microRNA-mRNA pairs associated with breast cancer subtypes

scientific article published on 31 May 2016

Identifying the immunodeficiency gateway proteins in humans and their involvement in microRNA regulation

scientific article published on 24 March 2011

Improved differential evolution for microarray analysis

scientific article published in January 2012

Improved dropClust R package with integrative analysis support for scRNA-seq data

scientific article published on 06 November 2019

Improvement of new automatic differential fuzzy clustering using SVM classifier for microarray analysis

scientific article published in November 2011

Improving multi-objective clustering through support vector machine: Application to gene expression data

scientific article published in November 2008

Incorporating fuzzy semantic similarity measure in detecting human protein complexes in PPI network: A multiobjective approach

scientific article published in July 2013

Incorporating ϵ-dominance in AMOSA: Application to multiobjective 0/1 knapsack problem and clustering gene expression data

scientific article published in May 2013

India's Computational Biology Growth and Challenges

scientific article published on 28 July 2016

Influence of miRNA in insulin signaling pathway and insulin resistance: micro-molecules with a major role in type-2 diabetes

scientific article published in 2014

Integrated analysis of gene expression and genome-wide DNA methylation for tumor prediction: An association rule mining-based approach

scientific article published in April 2013

Integrating Clustering and Supervised Learning for Categorical Data Analysis

scientific article published in July 2010

Integrating Multiple Data Sources for Combinatorial Marker Discovery: A Study in Tumorigenesis

scientific article

Integration of dense subgraph finding with feature clustering for unsupervised feature selection

scientific article published in April 2014

Interleukin-1alpha stimulates non-amyloidogenic pathway by alpha-secretase (ADAM-10 and ADAM-17) cleavage of APP in human astrocytic cells involving p38 MAP kinase.

scientific article published on July 2006

Kaempferol and quercetin stimulate granulocyte-macrophage colony-stimulating factor secretion in human prostate cancer cells

scientific article

Leprosy drug clofazimine activates peroxisome proliferator-activated receptor-γ and synergizes with imatinib to inhibit chronic myeloid leukemia cells

scientific article published on 01 August 2019

Low density solvent based dispersive liquid-liquid microextraction with gas chromatography-electron capture detection for the determination of cypermethrin in tissues and blood of cypermethrin treated rats.

scientific article

MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets

scientific article

Mapping the structural topology of IRS family cascades through computational biology

scientific article published in January 2013

Maternal thyroid hormone: a strong repressor of neuronal nitric oxide synthase in rat embryonic neocortex

scientific article published on 8 May 2008

Metal specificity of an iron-responsive element in Alzheimer's APP mRNA 5'untranslated region, tolerance of SH-SY5Y and H4 neural cells to desferrioxamine, clioquinol, VK-28, and a piperazine chelator.

scientific article published on January 2006

MicroRNA signatures highlight new breast cancer subtypes

scientific article published on 5 December 2014

MicroRNA transcription start site prediction with multi-objective feature selection

scientific article published on 06 January 2012

Mining association rules from HIV-human protein interactions

scientific article published in December 2010

Mining quasi-bicliques from HIV-1-human protein interaction network: a multiobjective biclustering approach

scientific article published on March 2013

Mitogenic action of calcium-sensing receptor on rat calvarial osteoblasts

scientific journal article

Modeling of a new tubercular maltosyl transferase, GlgE, study of its binding sites and virtual screening

scientific article published on 13 May 2014

Multi-class clustering of cancer subtypes through SVM based ensemble of pareto-optimal solutions for gene marker identification

scientific article

MultiMiTar: a novel multi objective optimization based miRNA-target prediction method

scientific article

Multiobjective GAs, quantitative indices, and pattern classification

scientific article published in October 2004

Multiobjective Genetic Clustering for Pixel Classification in Remote Sensing Imagery

scientific article published in May 2007

Multiobjective Genetic Clustering with Ensemble Among Pareto Front Solutions: Application to MRI Brain Image Segmentation

scientific article published in February 2009

Multiobjective Genetic Fuzzy Clustering of Categorical Attributes

scientific article published in December 2007

Multiobjective fuzzy biclustering in microarray data: Method and a new performance measure

scientific article published in June 2008

Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma

scientific article published on 19 October 2019

Novel 5' untranslated region directed blockers of iron-regulatory protein-1 dependent amyloid precursor protein translation: implications for down syndrome and Alzheimer's disease

scientific article (publication date: 2013)

Novel drug targets based on metallobiology of Alzheimer's disease.

scientific article

On Biclustering of Gene Expression Data

scientific article published in September 2010

ParSel: Parallel Selection of Micro-RNAs for Survival Classification in Cancers

scientific article published on 13 February 2017

Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations

scientific article published on 11 April 2011

Prediction of transcription start sites based on feature selection using AMOSA.

scientific article

Preface

Priority based ∊ dominance: A new measure in multiobjective optimization

scientific article published in June 2015

Protein Secondary Structure Prediction Using Machine Learning

scientific article published in 2013

PuTmiR: a database for extracting neighboring transcription factors of human microRNAs

scientific article

RNA therapeutics directed to the non coding regions of APP mRNA, in vivo anti-amyloid efficacy of paroxetine, erythromycin, and N-acetyl cysteine

scientific article published in July 2006

Real-coded differential crisp clustering for MRI brain image segmentation

scientific article published in July 2010

Refining Genetic Algorithm Based Fuzzy Clustering through Supervised Learning for Unsupervised Cancer Classification

scientific article published in 2009

Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets

scientific article published on May 2013

Role of the APP non-amyloidogenic signaling pathway and targeting alpha-secretase as an alternative drug target for treatment of Alzheimer's disease.

scientific article published on January 2007

Rosiglitazone up-regulates glial fibrillary acidic protein via HB-EGF secreted from astrocytes and neurons through PPARγ pathway and reduces apoptosis in high-fat diet-fed mice

scientific article published on 07 December 2018

SFSSClass: an integrated approach for miRNA based tumor classification

scientific article

SVMeFC: SVM Ensemble Fuzzy Clustering for Satellite Image Segmentation

scientific article published in January 2012

Score Based Aggregation of microRNA Target Orderings

scientific article published in 2012

Similarities in lindane induced alterations in protein expression profiling in different brain regions with neurodegenerative diseases

scientific article published on 9 September 2015

Simultaneous informative gene selection and clustering through multiobjective optimization

scientific article published in July 2010

Structural insight into Mycobacterium tuberculosis maltosyl transferase inhibitors: pharmacophore-based virtual screening, docking, and molecular dynamics simulations

scientific article published on 11 February 2015

Structure-Aware Principal Component Analysis for Single-Cell RNA-seq Data

scientific article published on 22 August 2018

Studying the differential co-expression of microRNAs reveals significant role of white matter in early Alzheimer's progression

scientific article

Studying the system-level involvement of microRNAs in Parkinson's disease

scientific article

Survey of Multiobjective Evolutionary Algorithms for Data Mining: Part II

scientific article published in February 2014

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

scientific article

The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells

scientific article published on 25 March 2014

The alpha-synuclein 5'untranslated region targeted translation blockers: anti-alpha synuclein efficacy of cardiac glycosides and Posiphen

scientific article

Topological patterns in microRNA-gene regulatory network: studies in colorectal and breast cancer

scientific article

Topology mapping of insulin-regulated glucose transporter GLUT4 using computational biology.

scientific article published on January 2013

Tracing Back the Temporal Change of SARS-CoV-2 with Genomic Signatures

scientific article published on 01 May 2020

Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes

scientific article published on 15 April 2015

Unsupervised cancer classification through SVM-boosted multiobjective fuzzy clustering with majority voting ensemble

scientific article published in May 2009

Validity index for crisp and fuzzy clusters

scientific article published in March 2004

WeCoMXP: Weighted Connectivity Measure Integrating Co-Methylation, Co-Expression and Protein-Protein Interactions for Gene-Module Detection

scientific article published on 03 September 2018

Weighted Markov Chain Based Aggregation of Bio-molecule Orderings

scientific article published on 31 January 2012

conLSH: Context based Locality Sensitive Hashing for mapping of noisy SMRT reads

scientific article published on 18 January 2020

dropClust: efficient clustering of ultra-large scRNA-seq data

scientific article published on 18 January 2018

miRNAs in insulin resistance and diabetes-associated pancreatic cancer: the 'minute and miracle' molecule moving as a monitor in the 'genomic galaxy'.

scientific article published on September 2013

miRT: a database of validated transcription start sites of human microRNAs

scientific article published on 29 September 2012

δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data

scientific article published in 2012

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