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List of works by Souvik Maiti

A G-quadruplex motif at the 3' end of sgRNAs improves CRISPR-Cas9 based genome editing efficiency.

scientific article published on 16 February 2018

A Single Nucleotide Polymorphism in Transcobalamin II (I5V) Induces Structural Changes in the Protein As Revealed by Molecular Modeling Studies ⬇️

scientific article published on 02 February 2011

A molecular-beacon-based screen for small molecule inhibitors of miRNA maturation.

scientific article

A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library

scientific article

Alternative splicing modulation mediated by G-quadruplex structures in MALAT1 lncRNA

scientific article published on 01 January 2022

An investigation on interaction between 14mer DNA oligonucleotide and CTAB by fluorescence and fluorescence resonance energy transfer studies

scientific article published in June 2010

Antagomirzymes: oligonucleotide enzymes that specifically silence microRNA function

scientific article

Antagonism of microRNA Function in Zebrafish Embryos by Using Locked Nucleic Acid Enzymes (LNAzymes)

scholarly article by Hemant Suryawanshi published in February 2012

Anti-cancer therapeutic potential of quinazoline based small molecules via global upregulation of miRNAs.

scientific article published on May 2014

Binding of berberine to human telomeric quadruplex - spectroscopic, calorimetric and molecular modeling studies

scientific article published on 04 July 2008

CRISPR/Cas9: a historical and chemical biology perspective of targeted genome engineering

scientific article

Combinatorial role of two G-quadruplexes in 5' UTR of transforming growth factor β2 (TGFβ2)

scientific article published on 16 August 2019

Cyclic Cationic Peptides Containing Sugar Amino Acids Selectively Distinguishes and Inhibits Maturation of Pre-miRNAs of the Same Family.

scientific article published on 5 November 2015

Dendritic effect of ligand-coated nanoparticles: enhanced apoptotic activity of silica-berberine nanoconjugates.

scientific article

Differential biophysical behavior of human telomeric RNA and DNA quadruplex

scientific article published on 01 July 2009

Effect of Headgroup on DNA−Cationic Surfactant Interactions†

scientific article published on 06 June 2007

Effect of different arginine methylations on the thermodynamics of Tat peptide binding to HIV-1 TAR RNA.

scientific article published on 27 March 2013

Effect of flanking bases on quadruplex stability and Watson-Crick duplex competition

scientific article published on 28 May 2009

Effect of locked nucleic acid (LNA) modification on hybridization kinetics of DNA duplex

scientific article

Effect of loop orientation on quadruplex-TMPyP4 interaction

scientific article published on 14 June 2008

Effect of loops and G-quartets on the stability of RNA G-quadruplexes

scientific article

Effect of the head-group geometry of amino acid-based cationic surfactants on interaction with plasmid DNA.

scientific article published on 3 June 2008

Effects for the incorporation of five-atom thioacetamido nucleic acid (TANA) backbone on hybridization thermodynamics and kinetics of DNA duplexes

scientific article published in March 2009

Expression and molecular characterization of the Mycobacterium tuberculosis PII protein

scientific journal article

Francisella novicida Cas9 interrogates genomic DNA with very high specificity and can be used for mammalian genome editing

scientific article published on 30 September 2019

Furan based cyclic homo-oligopeptides bind G-quadruplex selectively and repress c-MYC transcription

scientific article published on 17 June 2010

Furan based cyclic oligopeptides selectively target G-quadruplex

scientific article published on 10 October 2007

G-quadruplexes as tools for synthetic biology

scientific article published on 17 September 2013

Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome

scientific article published on 2 September 2017

Host-virus genome interactions: macro roles for microRNAs

scientific article published on 18 October 2007

Host-virus interaction: a new role for microRNAs

scientific article

Human telomeric RNA G-quadruplex response to point mutation in the G-quartets

scientific article published on 20 March 2015

Identification of novel circadian transcripts in the zebrafish retina

scientific article published on 10 January 2019

Identification, characterization and activation mechanism of a tyrosine kinase of Bacillus anthracis

scientific article published on 8 November 2008

In silico selection of an aptamer to estrogen receptor alpha using computational docking employing estrogen response elements as aptamer-alike molecules.

scientific article published on 22 February 2016

In the sense of transcription regulation by G-quadruplexes: asymmetric effects in sense and antisense strands

scientific article published on 03 June 2014

Information Encoded in Non-Native States Drives Substrate-Chaperone Pairing ⬇️

scientific article published on July 26, 2012

Inhibition of miR-21 by 3'/5'-Serinyl-Capped 2'-O-Methyl RNA Interspersed with 2'-O-(2-Amino-3-Methoxypropyl) Uridine Units

scientific article published on 25 July 2016

Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif

scientific article published on 30 May 2008

Interaction between 14mer DNA oligonucleotide and cationic surfactants of various chain lengths

scientific article published on 27 June 2008

Interaction between DNA and cationic surfactants: effect of DNA conformation and surfactant headgroup.

scientific article

Interaction between calf thymus DNA and cationic bottle-brush copolymers: equilibrium and stopped-flow kinetic studies

scientific article published on 09 December 2014

Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature

scientific article published in May 2008

Kinetic Studies of Amino Acid-Based Surfactant Binding to DNA

scientific article published on 15 May 2012

Magnetite (Fe3O4) nanocrystals affect the expression of genes involved in the TGF-beta signalling pathway

scientific article published on 19 February 2011

Modulation of microRNA function by synthetic ribozymes.

scientific article published on 9 August 2010

Molecular effects of uptake of gold nanoparticles in HeLa cells

scientific article published on 01 July 2007

Morphological effects of G-quadruplex stabilization using a small molecule in zebrafish

scientific article published on 11 February 2014

Mutagenesis Reveals an Unusual Combination of Guanines in RNA G-Quadruplex Formation

scientific article published on 22 August 2017

Nonconventional chemical inhibitors of microRNA: therapeutic scope

scientific article

Poly(N-isopropylacrylamide)-Based Polymers as Additive for Rapid Generation of Spheroid via Hanging Drop Method

scientific article published on 26 June 2020

Polyplex formation between PEGylated linear cationic block copolymers and DNA: equilibrium and kinetic studies

scientific article published on 12 June 2014

Potent inhibition of miR-27a by neomycin-bisbenzimidazole conjugates.

scientific article

Potential G-quadruplexes in the human long non-coding transcriptome

scientific article published in January 2012

Probing the amino acids critical for protein oligomerisation and protein-nucleotide interaction in Mycobacterium tuberculosis PII protein through integration of computational and experimental approaches.

scientific article published on 12 October 2013

Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

scientific article published on July 2006

RNA G-Quadruplexes: G-quadruplexes with “U” Turns ⬇️

scientific article published on January 1, 2012

RNA secondary structure profiling in zebrafish reveals unique regulatory features

scientific article published on 15 February 2018

Rapid, field-deployable nucleobase detection and identification using FnCas9

scientific article published on 09 April 2020

Restoration of miRNA-149 Expression by TmPyP4 Induced Unfolding of Quadruplex within Its Precursor

scientific article published on 09 January 2019

Retraction: Human telomeric G-quadruplex: targeting with small molecules

scientific article published on 27 November 2009

Role of G-quadruplex located at 5' end of mRNAs

scientific article published on 16 September 2014

Role of linker groups between hydrophilic and hydrophobic moieties of cationic surfactants on oligonucleotide-surfactant interactions

scientific article published in December 2009

Selective inhibition of miR-21 by phage display screened peptide

scientific article published on 30 March 2015

Selective targeting of G-quadruplex using furan-based cyclic homooligopeptides: effect on c-MYC expression

scientific article published on September 2010

Silencing c-MYC expression by targeting quadruplex in P1 promoter using locked nucleic acid trap

scientific article published in December 2008

Specific Cholesterol Binding Drives Drastic Structural Alterations in Apolipoprotein A1

scientific article published on 04 October 2018

Specificity of RSG-1.2 Peptide Binding to RRE-IIB RNA Element of HIV-1 over Rev Peptide Is Mainly Enthalpic in Origin ⬇️

scientific article published on August 10, 2011

Spo0B of Bacillus anthracis - a protein with pleiotropic functions.

scientific article

Stability and molecular recognition of quadruplexes with different loop length in the absence and presence of molecular crowding agents

scientific article

Stopped-flow kinetic studies of poly(amidoamine) dendrimer-calf thymus DNA to form dendriplexes.

scientific article published on 24 October 2013

Superior HIV-1 TAR Binders with Conformationally Constrained R52 Arginine Mimics in the Tat(48-57) Peptide.

scientific article published on 4 January 2018

Systematic Evaluation of Biophysical and Functional Characteristics of Selenomethylene-Locked Nucleic Acid-Mediated Inhibition of miR-21.

scientific article published on 5 December 2016

Targeting miRNA by tunable small molecule binders: peptidic aminosugar mediated interference in miR-21 biogenesis reverts epithelial to mesenchymal transition

scientific article published on 15 June 2018

Terminal Uridylyl Transferase Mediated Site-Directed Access to Clickable Chromatin Employing CRISPR-dCas9

scientific article published on 13 July 2020

The G-quadruplex augments translation in the 5' untranslated region of transforming growth factor β2.

scientific article published on 19 February 2013

The effect of N-acetylation and N-methylation of lysine residue of Tat peptide on its interaction with HIV-1 TAR RNA.

scientific article

The tale of RNA G-quadruplex

scientific article published on May 2015

The tuberculosis drug streptomycin as a potential cancer therapeutic: inhibition of miR-21 function by directly targeting its precursor.

scientific article

Thermodynamic, counterion and hydration effects for the incorporation of locked nucleic acid (LNA) nucleotides in duplex

scientific article

Thermodynamics and solvation dynamics of BIV TAR RNA-Tat peptide interaction

scientific article published on 31 October 2012

Thermodynamics of Peptide−RNA Recognition: The Binding of a Tat Peptide to TAR RNA ⬇️

scientific article published on September 2, 2010

Triplex formation with alpha-L-LNA (alpha-L-ribo-configured locked nucleic acid)

scientific article published on 01 January 2006

Understanding the effect of locked nucleic acid and 2'-O-methyl modification on the hybridization thermodynamics of a miRNA-mRNA pair in the presence and absence of AfPiwi protein

scientific article published on 07 March 2014

Unique structural modulation of a non-native substrate by cochaperone DnaJ.

scientific article published on 30 January 2013

Unlocking G-quadruplex: Effect of unlocked nucleic acid on G-quadruplex stability

scientific article published on 21 June 2011

Unveiling the novel dual specificity protein kinases in Bacillus anthracis: identification of the first prokaryotic dual specificity tyrosine phosphorylation-regulated kinase (DYRK)-like kinase

scientific article

Zinc Oxide Nanoparticles Dispersed in Ionic Liquids Show High Antimicrobial Efficacy to Skin-Specific Bacteria.

scientific article published on 19 April 2018

Zinc regulates the activity of kinase-phosphatase pair (BasPrkC/BasPrpC) in Bacillus anthracis.

scientific article published on 22 June 2013

microRNA: an emerging therapeutic

scientific article published on June 2007

β,γ-Bis-substituted PNA with configurational and conformational switch: preferred binding to cDNA/RNA and cell-uptake studies

scientific article published on May 2015

“Locked onto the target”: increasing the efficiency of antagomirzymes using locked nucleic acid modifications

scientific article published on November 2010

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