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List of works by Julia Bailey-Serres

A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice

scientific article

Acidic Phosphoprotein Complex of the 60S Ribosomal Subunit of Maize Seedling Roots (Components and Changes in Response to Flooding) ⬇️

scientific article published on August 1, 1997

Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation

scientific article

Annotating genes of known and unknown function by large-scale coexpression analysis

scientific article published on 19 March 2008

Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Enables Time-Resolved Analysis of Protein Synthesis in Native Plant Tissue.

scientific article published on 19 January 2017

Both 5' and 3' sequences of maize adh1 mRNA are required for enhanced translation under low-oxygen conditions

scientific article published on October 1996

Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis

scientific article

Characterization of distinct root and shoot responses to low-oxygen stress in Arabidopsis with a focus on primary C- and N-metabolism

scientific article

Co-operation between cytosolic and plastidic oxidative pentose phosphate pathways revealed by 6-phosphogluconate dehydrogenase-deficient genotypes of maize

scientific article published in 1998

Cold shock protein 1 chaperones mRNAs during translation in Arabidopsis thaliana

scientific article published on 06 May 2013

Comparison of GC-MS and NMR for metabolite profiling of rice subjected to submergence stress

scientific article

Conserved and nuanced hierarchy of gene regulatory response to hypoxia

scientific article published on 18 January 2020

Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses

scientific article published on 22 January 2010

DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs

scientific article published on 01 June 2020

Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana

scientific article published in June 2004

Differential metabolic regulation governed by the rice SUB1A gene during submergence stress and identification of alanylglycine by 1H NMR spectroscopy

scientific article

Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress

scientific article published on 05 September 2019

Ethylene—A key regulator of submergence responses in rice

article

Evaluation of Translational Control Mechanisms in Response to Oxygen Deprivation in Maize

Evolutionary analyses of the 12-kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes

scientific article published in March 1998

Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice

scientific article published on 29 September 2008

Evolutionary flexibility in flooding response circuitry in angiosperms

scientific article published on 01 September 2019

Expression and distribution of cytosolic 6-phosphogluconate dehydrogenase isozymes in maize

scientific article published in June 1992

Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism.

scientific article published on 14 June 2011

Eyes off transcription! The wonderful world of post-transcriptional regulation.

scientific article

Flood resilience loci SUBMERGENCE 1 and ANAEROBIC GERMINATION 1 interact in seedlings established underwater

scientific article published on 21 July 2020

Flooding stress: acclimations and genetic diversity

scientific article published on January 2008

Flooding tolerance: O2 sensing and survival strategies.

scientific article published on 05 July 2013

Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis

scientific article published on January 2003

Genome cluster database. A sequence family analysis platform for Arabidopsis and rice

scientific article published on May 2005

Genome-wide Analysis of Transcript Abundance and Translation in Arabidopsis Seedlings Subjected to Oxygen Deprivation.

scientific article published in November 2005

Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation

scientific article

Getting the message across: cytoplasmic ribonucleoprotein complexes

scientific article published on 18 July 2009

Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.

scientific article

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

scientific article published on 23 October 2011

Hypoxic stress-induced changes in ribosomes of maize seedling roots.

scientific article

Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression

scientific article

Integrated multiomic analysis from chromatin to translation of stimulus-regulated gene activity exposes dominant patterns of nuclear-level control

article

Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress

scientific article published on 13 September 2019

Isolation and analysis of mRNAs from specific cell types of plants by ribosome immunopurification

scientific article published in January 2013

Life in the balance: a signaling network controlling survival of flooding ⬇️

scientific article published on August 31, 2010

Lighting the shadows: methods that expose nuclear and cytoplasmic gene regulatory control

scientific article published on 8 August 2017

Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening

article

Making sense of low oxygen sensing

scientific article published on 24 January 2012

Microgenomics: Genome-Scale, Cell-Specific Monitoring of Multiple Gene Regulation Tiers ⬇️

scientific article published on February 28, 2013

Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia.

scientific article published on 13 January 2011

Natural variation of submergence tolerance among Arabidopsis thaliana accessions

scientific article published on 25 November 2010

Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia

scientific article published on 30 May 2017

Nuclear transcriptomes at high resolution using retooled INTACT

Nuclear transcriptomes at high resolution using retooled INTACT.

scientific article

Nuclear-mitochondrial interactions in cytoplasmic male-sterile sorghum

scientific article

Nucleotide sequence of a cDNA for the maize protein synthesis initiation factor 4A.

scientific article

Oxygen deprivation stimulates Ca2+-mediated phosphorylation of mRNA cap-binding protein eIF4E in maize roots.

scientific article published on July 1999

Ozone-Induced Alterations in the Accumulation of Newly Synthesized Proteins in Leaves of Maize.

scientific article

Plant biology: Genetics of high-rise rice.

scientific article published in August 2009

Plant responses to hypoxia--is survival a balancing act?

scientific article published in September 2004

Plant tolerance of flooding stress--recent advances.

scientific article published on 22 August 2014

Plants, their organelles, viruses and transgenes reveal the mechanisms and relevance of post-transcriptional processes. Leysin, VD, Switzerland, February 25-28, 1999

scientific article published on October 1999

Polysomes, stress granules and processing bodies: a dynamic triumvirate controlling cytoplasmic mRNA fate and function

scientific article published on 20 November 2017

Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice

scientific article published on 7 May 2012

Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules.

scientific article published on 11 December 2017

Profiling of translatomes of in vivo-grown pollen tubes reveals genes with roles in micropylar guidance during pollination in Arabidopsis

article

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis.

scientific article published on 20 October 2009

Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes

scientific article

Pummelo fruit transcript homologous to ripening-induced genes.

scientific article

RNase Activities Are Reduced Concomitantly with Conservation of Total Cellular RNA and Ribosomes in O2-Deprived Seedling Roots of Maize.

scientific article published in November 1997

Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.

scientific article published on 14 December 2015

Regulated heterogeneity in 12-kDa P-protein phosphorylation and composition of ribosomes in maize (Zea mays L.).

scientific article published on 18 January 2001

Regulated phosphorylation of 40S ribosomal protein S6 in root tips of maize

scientific article

Regulation of translational initiation in plants.

scientific article

Reprogramming of Root Cells during Nitrogen-Fixing Symbiosis Involves Dynamic Polysome Association of Coding and Noncoding RNAs

scientific article published on 20 November 2019

Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.

scientific article published on 2 November 2017

RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance

scientific article

Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia in Arabidopsis

scientific article

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana

scientific article

Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection in Medicago truncatula ⬇️

scientific article published on November 26, 2012

Sensing and signalling in response to oxygen deprivation in plants and other organisms

scientific article

Size distributions of circular molecules in plant mitochondrial DNAs

scientific article

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

scientific article

Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

scholarly article

Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons.

scientific article published on November 1993

The Arabidopsis translatome cell-specific mRNA atlas

The Dynamic Kaleidoscope of RNA Biology in Plants

scientific article published on 01 January 2020

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

scientific article published in December 2017

The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.

scientific article

The roles of reactive oxygen species in plant cells

article

The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice

scientific article published on 16 October 2012

The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice

scientific article published on 14 January 2011

The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors

scientific article

Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize

scientific article published in September 1998

Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress.

scientific article

Transient MPK6 activation in response to oxygen deprivation and reoxygenation is mediated by mitochondria and aids seedling survival in Arabidopsis

scientific article

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

scientific article

Two Rumex species from contrasting hydrological niches regulate flooding tolerance through distinct mechanisms.

scientific article

Unraveling the tapestry of networks involving reactive oxygen species in plants

scientific article published in July 2008

Waterproofing crops: effective flooding survival strategies

scientific article

What makes species unique? The contribution of proteins with obscure features

scientific article published on January 2006

mRNA sequence features that contribute to translational regulation in Arabidopsis

scientific article

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