List of works - Don Kulasiri

A GENERALIZED STOCHASTIC SOLUTE TRANSPORT MODEL FOR MULTISCALE DISPERSION IN POROUS MEDIA

A Novel Data-Driven Boolean Model for Genetic Regulatory Networks

scientific article published on 25 September 2018

A Review of Systems Biology Perspective on Genetic Regulatory Networks with Examples

article

A comparison of model-based reasoning and learning approaches to power transmission fault diagnosis

article

A comprehensive complex systems approach to the study and analysis of mammalian cell cycle control system in the presence of DNA damage stress

scientific article

A mathematical model of synaptotagmin 7 revealing functional importance of short-term synaptic plasticity

A multifarious exploration of synaptic tagging and capture hypothesis in synaptic plasticity: Development of an integrated mathematical model and computational experiments

scientific article published in 2023

A nutrient dependant switch explains mutually exclusive existence of meiosis and mitosis initiation in budding yeast.

scientific article published on 5 October 2013

An unbiased sensitivity analysis reveals important parameters controlling periodicity of circadian clock.

scientific article published in February 2010

Ca2+ dysregulation in the endoplasmic reticulum related to Alzheimer's disease: A review on experimental progress and computational modeling

scientific article published on 19 May 2015

Classification of lamb carcass using machine vision: Comparison of statistical and neural network analyses

Computational experiments reveal the efficacy of targeting CDK2 and CKIs for significantly lowering cellular senescence bar for potential cancer treatment

scientific article published on 17 December 2012

Computational investigation of Amyloid-β-induced location- and subunit-specific disturbances of NMDAR at hippocampal dendritic spine in Alzheimer's disease.

scientific article published on 24 August 2017

Computational modeling and experimental validation of odor detection behaviors of classically conditioned parasitic wasp, Microplitis croceipes.

scientific article published on 20 December 2014

Computing Molecular Fluctuations in Biochemical Reaction Systems Based on a Mechanistic, Statistical Theory of Irreversible Processes

scientific article published on January 1, 2011

DifFUZZY: a fuzzy clustering algorithm for complex datasets

Digital image analysis based automated kiwifruit counting technique

Distinct noise-controlling roles of multiple negative feedback mechanisms in a prokaryotic operon system ⬇️

scientific article published on March 1, 2011

Fabrication and assessment of milk phospholipid-complexed antioxidant phytosomes with vitamin C and E: A comparison with liposomes

scientific article published on 20 April 2020

Functional repertoire of protein kinases and phosphatases in synaptic plasticity and associated neurological disorders

scientific article published on 01 June 2021

Global sensitivity analysis of a model related to memory formation in synapses: Model reduction based on epistemic parameter uncertainties and related issues

scientific article published on 9 February 2017

Integrated analysis of gene network in childhood leukemia from microarray and pathway databases

scientific article published on 15 April 2014

Integrated signaling pathway and gene expression regulatory model to dissect dynamics of Escherichia coli challenged mammary epithelial cells

scientific article published on 5 October 2014

Knowledge based jitter analysis in power system control

Machine Learning for Childhood Acute Lymphoblastic Leukaemia Gene Expression Data Analysis: A Review

article

Mathematical modelling of core regulatory mechanism in p53 protein that activates apoptotic switch

scientific article published on 12 November 2018

Mathematical modelling of p53 basal dynamics and DNA damage response.

scientific article

Milk lipid in vitro digestibility in wheat, corn and rice starch hydrogels

Milk phospholipid antioxidant activity and digestibility: Kinetics of fatty acids and choline release

Modeling protein-protein interactions in axon initial segment to understand their potential impact on action potential initiation

scientific article published on 01 April 2021

Modelling bidirectional modulations in synaptic plasticity: A biochemical pathway model to understand the emergence of long term potentiation (LTP) and long term depression (LTD).

scientific article published on 13 May 2016

Modelling heat and mass transfer in drying of biological materials: a simplified approach to materials with small dimensions

scientific article published in 1996

Modelling of circadian rhythms in Drosophila incorporating the interlocked PER/TIM and VRI/PDP1 feedback loops

scientific article published on 29 October 2006

Modelling the dynamics of CaMKII-NMDAR complex related to memory formation in synapses: the possible roles of threonine 286 autophosphorylation of CaMKII in long term potentiation.

scientific article published on 11 November 2014

Neural Networks for Robotic Detection of Mastitis in Dairy Cows: Netherlands and New Zealand Perspectives

article

Neural networks for predicting fracture toughness of individual wood samples

Novel domain expansion methods to improve the computational efficiency of the Chemical Master Equation solution for large biological networks

scientific article published on 11 November 2020

Novel recurrent neural network for modelling biological networks: oscillatory p53 interaction dynamics.

scientific article published on 5 September 2013

On multiple regulatory mechanisms in the tryptophan operon system in Escherichia coli: in silico study of perturbation dynamics

scientific article published in January 2008

On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems

scientific article published on 11 May 2009

Prediction of lamb carcass grades using features extracted from lamb chop images

scientific article

Prediction of lamb tenderness using image surface texture features

Production of Milk Phospholipid-Enriched Dairy Ingredients

scientific article published on 02 March 2020

Regulation of Meiosis Initiation before the Commitment Point in Budding Yeast: A Review of Biology, Molecular Mechanisms and Related Mathematical Models

Robustness of CDK2 in Triggering Cellular Senescence based on Probability of DNA-damaged Cells Passing G1∕S Checkpoint

Robustness of CDK2 in triggering cellular senescence based on probability of DNA-damaged cells passing G1/S checkpoint

Robustness of G1/S checkpoint pathways in cell cycle regulation based on probability of DNA-damaged cells passing as healthy cells.

scientific article published on 21 July 2010

Robustness of circadian rhythms in the presence of molecular fluctuations: an investigation based on a mechanistic, statistical theory and a simulation algorithm.

scientific article published on 25 June 2011

Stochastic Neural Networks for Modelling Random Processes from Observed Data

Stress intensity factor of wood from crack-tip displacement fields obtained from digital image processing

Synthesizing Neurophysiology, Genetics, Behaviour and Learning to Produce Whole-Insect Programmable Sensors to Detect Volatile Chemicals

article

Synthesizing neurophysiology, genetics, behaviour and learning to produce whole-insect programmable sensors to detect volatile chemicals

scientific article published on January 2010

Systems biology of synaptic plasticity: a review on N-methyl-D-aspartate receptor mediated biochemical pathways and related mathematical models.

scientific article

The effects of fungal lipase-treated milk lipids on bread making

The estimation of parameters for stochastic differential equations using neural networks

The meiotic-mitotic initiation switch in budding yeast maintains its function robustly against sensitive parameter perturbations

scientific article published on 4 September 2014

Three neural network case studies in biology and natural resource management

Towards Abstraction of Computational Modelling of Mammalian Cell Cycle: Model Reduction Pipeline Incorporating Multi-Level Hybrid Petri Nets

scientific article published on 03 March 2020

Towards a generalized colour image segmentation for kiwifruit detection

Using activity time windows and logical representation to reduce the complexity of biological network models: G1/S checkpoint pathway with DNA damage

scientific article published on 09 March 2020

Using insect sniffing devices for detection

scientific article published on 28 March 2008

Vesicle properties and health benefits of milk phospholipids: a review

What can computational modeling offer for studying the Ca dysregulation in Alzheimer's disease: current research and future directions

scholarly article by Jingyi Liang & Don Kulasiri published July 2018 in Neural Regeneration Research

List of works by Don Kulasiri

A GENERALIZED STOCHASTIC SOLUTE TRANSPORT MODEL FOR MULTISCALE DISPERSION IN POROUS MEDIA

A Novel Data-Driven Boolean Model for Genetic Regulatory Networks

A Review of Systems Biology Perspective on Genetic Regulatory Networks with Examples

A comparison of model-based reasoning and learning approaches to power transmission fault diagnosis

A comprehensive complex systems approach to the study and analysis of mammalian cell cycle control system in the presence of DNA damage stress

A mathematical model of synaptotagmin 7 revealing functional importance of short-term synaptic plasticity

A multifarious exploration of synaptic tagging and capture hypothesis in synaptic plasticity: Development of an integrated mathematical model and computational experiments

A nutrient dependant switch explains mutually exclusive existence of meiosis and mitosis initiation in budding yeast.

An unbiased sensitivity analysis reveals important parameters controlling periodicity of circadian clock.

Ca2+ dysregulation in the endoplasmic reticulum related to Alzheimer's disease: A review on experimental progress and computational modeling

Classification of lamb carcass using machine vision: Comparison of statistical and neural network analyses

Computational experiments reveal the efficacy of targeting CDK2 and CKIs for significantly lowering cellular senescence bar for potential cancer treatment

Computational investigation of Amyloid-β-induced location- and subunit-specific disturbances of NMDAR at hippocampal dendritic spine in Alzheimer's disease.

Computational modeling and experimental validation of odor detection behaviors of classically conditioned parasitic wasp, Microplitis croceipes.

Computing Molecular Fluctuations in Biochemical Reaction Systems Based on a Mechanistic, Statistical Theory of Irreversible Processes

DifFUZZY: a fuzzy clustering algorithm for complex datasets

Digital image analysis based automated kiwifruit counting technique

Distinct noise-controlling roles of multiple negative feedback mechanisms in a prokaryotic operon system ⬇️

Fabrication and assessment of milk phospholipid-complexed antioxidant phytosomes with vitamin C and E: A comparison with liposomes

Functional repertoire of protein kinases and phosphatases in synaptic plasticity and associated neurological disorders

Global sensitivity analysis of a model related to memory formation in synapses: Model reduction based on epistemic parameter uncertainties and related issues

Integrated analysis of gene network in childhood leukemia from microarray and pathway databases

Integrated signaling pathway and gene expression regulatory model to dissect dynamics of Escherichia coli challenged mammary epithelial cells

Knowledge based jitter analysis in power system control

Machine Learning for Childhood Acute Lymphoblastic Leukaemia Gene Expression Data Analysis: A Review

Mathematical modelling of core regulatory mechanism in p53 protein that activates apoptotic switch

Mathematical modelling of p53 basal dynamics and DNA damage response.

Milk lipid in vitro digestibility in wheat, corn and rice starch hydrogels

Milk phospholipid antioxidant activity and digestibility: Kinetics of fatty acids and choline release

Modeling protein-protein interactions in axon initial segment to understand their potential impact on action potential initiation

Modelling bidirectional modulations in synaptic plasticity: A biochemical pathway model to understand the emergence of long term potentiation (LTP) and long term depression (LTD).

Modelling heat and mass transfer in drying of biological materials: a simplified approach to materials with small dimensions

Modelling of circadian rhythms in Drosophila incorporating the interlocked PER/TIM and VRI/PDP1 feedback loops

Modelling the dynamics of CaMKII-NMDAR complex related to memory formation in synapses: the possible roles of threonine 286 autophosphorylation of CaMKII in long term potentiation.

Neural Networks for Robotic Detection of Mastitis in Dairy Cows: Netherlands and New Zealand Perspectives

Neural networks for predicting fracture toughness of individual wood samples

Novel domain expansion methods to improve the computational efficiency of the Chemical Master Equation solution for large biological networks

Novel recurrent neural network for modelling biological networks: oscillatory p53 interaction dynamics.

On multiple regulatory mechanisms in the tryptophan operon system in Escherichia coli: in silico study of perturbation dynamics

On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems

Prediction of lamb carcass grades using features extracted from lamb chop images

Prediction of lamb tenderness using image surface texture features

Production of Milk Phospholipid-Enriched Dairy Ingredients

Regulation of Meiosis Initiation before the Commitment Point in Budding Yeast: A Review of Biology, Molecular Mechanisms and Related Mathematical Models

Robustness of CDK2 in Triggering Cellular Senescence based on Probability of DNA-damaged Cells Passing G1∕S Checkpoint

Robustness of CDK2 in triggering cellular senescence based on probability of DNA-damaged cells passing G1/S checkpoint

Robustness of G1/S checkpoint pathways in cell cycle regulation based on probability of DNA-damaged cells passing as healthy cells.

Robustness of circadian rhythms in the presence of molecular fluctuations: an investigation based on a mechanistic, statistical theory and a simulation algorithm.

Stochastic Neural Networks for Modelling Random Processes from Observed Data

Stress intensity factor of wood from crack-tip displacement fields obtained from digital image processing

Synthesizing Neurophysiology, Genetics, Behaviour and Learning to Produce Whole-Insect Programmable Sensors to Detect Volatile Chemicals

Synthesizing neurophysiology, genetics, behaviour and learning to produce whole-insect programmable sensors to detect volatile chemicals

Systems biology of synaptic plasticity: a review on N-methyl-D-aspartate receptor mediated biochemical pathways and related mathematical models.

The effects of fungal lipase-treated milk lipids on bread making

The estimation of parameters for stochastic differential equations using neural networks

The meiotic-mitotic initiation switch in budding yeast maintains its function robustly against sensitive parameter perturbations

Three neural network case studies in biology and natural resource management

Towards Abstraction of Computational Modelling of Mammalian Cell Cycle: Model Reduction Pipeline Incorporating Multi-Level Hybrid Petri Nets

Towards a generalized colour image segmentation for kiwifruit detection

Using activity time windows and logical representation to reduce the complexity of biological network models: G1/S checkpoint pathway with DNA damage

Using insect sniffing devices for detection

Vesicle properties and health benefits of milk phospholipids: a review

What can computational modeling offer for studying the Ca dysregulation in Alzheimer's disease: current research and future directions