List of works - Roger D. Kornberg

A bridge to transcription by RNA polymerase

scientific article

A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast

scientific article

A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3

scientific article

A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II

scientific article

Affinity purification of specific chromatin segments from chromosomal loci in yeast

scientific article published on December 2003

An autobiographic conversation with Roger D. Kornberg on his work on transcription regulation

scientific article

An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics

scientific article

Architecture of an RNA polymerase II transcription pre-initiation complex

scientific article published on 26 September 2013

Architecture of the Mediator head module

scientific article

Association of the Mediator complex with enhancers of active genes

scientific article

Chromatin and transcription: where do we go from here

scientific article

Chromatin potentiates transcription

scientific article

Chromatin remodeling by DNA bending, not twisting

scientific article

Chromatin remodeling by nucleosome disassembly in vitro

scientific article

Chromatin-remodeling and the initiation of transcription

scientific article

Chromatin-remodeling for transcription

scientific article published in January 2017

Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription ⬇️

scientific article (publication date: 10 June 2003)

Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography

scientific article

Defined DNA/nanoparticle conjugates

scientific article

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center

scholarly article

Electron microscopic analysis of the RSC chromatin remodeling complex

scientific article published on January 2004

Epigenomics: a roadmap, but to where?

scientific article published on October 2008

Formation and Fate of a Complete 31-Protein RNA Polymerase II Transcription Preinitiation Complex* ⬇️

scientific article published on January 9, 2013

Head module control of mediator interactions

scientific article published in August 2006

Histone Acetylation Inhibits RSC and Stabilizes the +1 Nucleosome

scientific article published on 25 October 2018

Initiation Complex Structure and Promoter Proofreading

scientific article

Isolation and assay of the RSC chromatin-remodeling complex from Saccharomyces cerevisiae

scientific article published on January 2004

Isolation of an activator-dependent, promoter-specific chromatin remodeling factor ⬇️

scientific article published on June 6, 2011

Lock and Key to Transcription: σ-DNA Interaction ⬇️

scientific article published on December 9, 2011

Mechanism of chromatin remodeling

scientific article

Mediator and the mechanism of transcriptional activation

scientific article

Mediator as a general transcription factor

scientific article

Mediator of Transcriptional Regulation

scientific article

Molecular architecture of the yeast Mediator complex

scientific article

Nanoparticle imaging. Electron microscopy of gold nanoparticles at atomic resolution

scientific article

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

scientific article published on May 2008

Nucleosomes unfold completely at a transcriptionally active promoter

scientific article published in June 2003

On the importance of accounting for nuclear quantum effects in ab initio calibrated force fields in biological simulations

article published in the Proceedings of the National Academy of Sciences of the United States of America

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map.

scientific article published in August 2017

Purification of defined chromosomal domains

scientific article

RNA polymerase II transcription: structure and mechanism

scientific article published on 18 September 2012

RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription

scientific article

RNA polymerase II/TFIIF structure and conserved organization of the initiation complex

scientific article published on October 2003

Real-time observation of the initiation of RNA polymerase II transcription

scientific article published on 2 September 2015

Removal of promoter nucleosomes by disassembly rather than sliding in vivo

scientific article published in June 2004

Revised subunit structure of yeast transcription factor IIH (TFIIH) and reconciliation with human TFIIH.

scientific article

Rigid, specific, and discrete gold nanoparticle/antibody conjugates

scientific article published in March 2006

Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions

scientific article

Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution

scientific article

Selective removal of promoter nucleosomes by the RSC chromatin-remodeling complex

scientific article published on 3 July 2011

Stable Chromosome Condensation Revealed by Chromosome Conformation Capture

scientific article

Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

scientific article

Structural analysis of the RSC chromatin-remodeling complex

scientific article

Structural basis of eukaryotic gene transcription

scientific article

Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution

scientific article

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

scientific article

Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center

scientific article

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

scientific article

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

scientific article

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex

scientific article

Structure of a RSC-nucleosome complex and insights into chromatin remodeling

scientific article published on 23 November 2008

Structure of a thiol monolayer-protected gold nanoparticle at 1.1 A resolution

scientific article

Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

scientific article

Structure of an RNA polymerase II preinitiation complex

scientific article

Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II

scientific article

Subunit architecture of general transcription factor TFIIH

scientific article

Synthesis and bioconjugation of 2 and 3 nm-diameter gold nanoparticles

scientific article

Synthesis and characterization of Au102(p-MBA)44 nanoparticles

scientific article published on 14 February 2011

Synthesis of Water-Soluble, Thiolate-Protected Gold Nanoparticles Uniform in Size

scientific article published on 4 April 2016

Synthetic peptides as nuclear localization signals

scientific article published in Nature

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation

scientific article

The Mechanism of Protein Crystal Growth from Lipid Layers

The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin

scientific article

The location of nucleosomes in chromatin: specific or statistical?

scientific article published in Nature

The molecular basis of eukaryotic transcription

scientific article

The molecular basis of eukaryotic transcription (Nobel Lecture).

scientific article published in January 2007

Transcription factor b (TFIIH) is required during nucleotide-excision repair in yeast

scientific article published in Nature

Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms

scientific article

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.

scientific article published on 9 April 2012

Two-dimensional crystallization technique for imaging macromolecules, with application to antigen–antibody–complement complexes

scientific article published in Nature

Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage

scientific article

Uncoupling Promoter Opening from Start-Site Scanning

scientific article published on 11 June 2015

[11] Two-dimensional protein crystals in aid of three-dimensional protein crystal growth

scientific article

List of works by Roger D. Kornberg

A bridge to transcription by RNA polymerase

A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast

A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3

A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II

Affinity purification of specific chromatin segments from chromosomal loci in yeast

An autobiographic conversation with Roger D. Kornberg on his work on transcription regulation

An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics

Architecture of an RNA polymerase II transcription pre-initiation complex

Architecture of the Mediator head module

Association of the Mediator complex with enhancers of active genes

Chromatin and transcription: where do we go from here

Chromatin potentiates transcription

Chromatin remodeling by DNA bending, not twisting

Chromatin remodeling by nucleosome disassembly in vitro

Chromatin-remodeling and the initiation of transcription

Chromatin-remodeling for transcription

Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription ⬇️

Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography

Defined DNA/nanoparticle conjugates

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center

Electron microscopic analysis of the RSC chromatin remodeling complex

Epigenomics: a roadmap, but to where?

Formation and Fate of a Complete 31-Protein RNA Polymerase II Transcription Preinitiation Complex* ⬇️

Head module control of mediator interactions

Histone Acetylation Inhibits RSC and Stabilizes the +1 Nucleosome

Initiation Complex Structure and Promoter Proofreading

Isolation and assay of the RSC chromatin-remodeling complex from Saccharomyces cerevisiae

Isolation of an activator-dependent, promoter-specific chromatin remodeling factor ⬇️

Lock and Key to Transcription: σ-DNA Interaction ⬇️

Mechanism of chromatin remodeling

Mediator and the mechanism of transcriptional activation

Mediator as a general transcription factor

Mediator of Transcriptional Regulation

Molecular architecture of the yeast Mediator complex

Nanoparticle imaging. Electron microscopy of gold nanoparticles at atomic resolution

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

Nucleosomes unfold completely at a transcriptionally active promoter

On the importance of accounting for nuclear quantum effects in ab initio calibrated force fields in biological simulations

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map.

Purification of defined chromosomal domains

RNA polymerase II transcription: structure and mechanism

RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription

RNA polymerase II/TFIIF structure and conserved organization of the initiation complex

Real-time observation of the initiation of RNA polymerase II transcription

Removal of promoter nucleosomes by disassembly rather than sliding in vivo

Revised subunit structure of yeast transcription factor IIH (TFIIH) and reconciliation with human TFIIH.

Rigid, specific, and discrete gold nanoparticle/antibody conjugates

Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions

Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution

Selective removal of promoter nucleosomes by the RSC chromatin-remodeling complex

Stable Chromosome Condensation Revealed by Chromosome Conformation Capture

Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

Structural analysis of the RSC chromatin-remodeling complex

Structural basis of eukaryotic gene transcription

Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex

Structure of a RSC-nucleosome complex and insights into chromatin remodeling

Structure of a thiol monolayer-protected gold nanoparticle at 1.1 A resolution

Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

Structure of an RNA polymerase II preinitiation complex

Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II

Subunit architecture of general transcription factor TFIIH

Synthesis and bioconjugation of 2 and 3 nm-diameter gold nanoparticles

Synthesis and characterization of Au102(p-MBA)44 nanoparticles

Synthesis of Water-Soluble, Thiolate-Protected Gold Nanoparticles Uniform in Size

Synthetic peptides as nuclear localization signals

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation

The Mechanism of Protein Crystal Growth from Lipid Layers

The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin

The location of nucleosomes in chromatin: specific or statistical?

The molecular basis of eukaryotic transcription

The molecular basis of eukaryotic transcription (Nobel Lecture).

Transcription factor b (TFIIH) is required during nucleotide-excision repair in yeast

Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.