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List of works by Jay Keasling

13C Metabolic Flux Analysis for Systematic Metabolic Engineering of S. cerevisiae for Overproduction of Fatty Acids.

scientific article published on 05 October 2016

A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae

scientific article

A Droplet Microfluidic Platform for Automating Genetic Engineering

scientific article published on February 2016

A Dynamic Model of the Escherichia coli Phosphate-Starvation Response ⬇️

scientific article published on January 7, 1998

A FAIR-compliant parts catalogue for genome engineering and expression control in Saccharomyces cerevisiae

scientific article published on 16 February 2022

A High-Throughput Mass Spectrometric Enzyme Activity Assay Enabling the Discovery of Cytochrome P450 Biocatalysts

scientific article published on 13 June 2019

A Method to Constrain Genome-Scale Models with 13C Labeling Data

scientific article

A Pseudomonas putida efflux pump acts on short-chain alcohols.

scientific article

A Salmonella-based, propionate-inducible, expression system for Salmonella enterica

scientific article

A Versatile Microfluidic Device for Automating Synthetic Biology.

scientific article published on 15 June 2015

A bimodular PKS platform that expands the biological design space

scientific article published on 06 August 2020

A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering.

scientific article published on 30 October 2017

A deep-sea hydrothermal vent isolate, Pseudomonas aeruginosa CW961, requires thiosulfate for Cd tolerance and precipitation.

scientific article published on April 2002

A framework and model system to investigate linear system behavior in Escherichia coli.

scientific article

A kinetic model describing Shewanella oneidensis MR-1 growth, substrate consumption, and product secretion

scientific article published in January 2007

A kinetic-based approach to understanding heterologous mevalonate pathway function in E. coli

scientific article published on 19 August 2014

A microbial supply chain for production of the anti-cancer drug vinblastine

scientific article published in 2022

A model for improving microbial biofuel production using a synthetic feedback loop

scientific article

A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3).

scientific article published in April 2009

A peptide-based method for 13C Metabolic Flux Analysis in microbial communities

scientific article (publication date: September 2014)

A propionate-inducible expression system for enteric bacteria

scientific article

A rapid and inexpensive labeling method for microarray gene expression analysis

scientific article

A rapid methods development workflow for high-throughput quantitative proteomic applications

article

A systems analysis of NADH dehydrogenase mutants reveals flexibility and limits of Pseudomonas taiwanensis VLB120's metabolism

scientific article published on 03 April 2020

A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins.

scientific article published on 7 September 2014

A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels

scientific article (publication date: 2012)

A tightly regulated inducible expression system utilizing the fim inversion recombination switch

scientific article published in May 2006

ATP citrate lyase mediated cytosolic acetyl-CoA biosynthesis increases mevalonate production in Saccharomyces cerevisiae.

scientific article published on 3 March 2016

Absence of diauxie during simultaneous utilization of glucose and Xylose by Sulfolobus acidocaldarius

scientific article

Acid enhanced ionic liquid pretreatment of biomass

Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC.

scientific article

Addressing the need for alternative transportation fuels: the Joint BioEnergy Institute

scientific article published in January 2008

Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol

scientific article published on 09 March 2020

Advanced biofuel production in microbes

scientific article

Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling

scientific article published on March 2009

Alteration of Polyketide Stereochemistry from anti to syn by a Ketoreductase Domain Exchange in a Type I Modular Polyketide Synthase Subunit.

scientific article

An Orthogonal and pH-Tunable Sensor-Selector for Muconic Acid Biosynthesis in Yeast.

scientific article published on 3 April 2018

An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production.

scientific article published on 26 March 2014

An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism

scientific article published on 10 June 2020

Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling

scientific article published on 17 November 2006

Analysis of amino acid isotopomers using FT-ICR MS.

scientific article

Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strain

scientific article published in April 2009

Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry.

scientific article

Application of an Acyl-CoA Ligase from Streptomyces aizunensis for Lactam Biosynthesis.

scientific article

Application of functional genomics to pathway optimization for increased isoprenoid production.

scientific article published on 14 March 2008

Application of targeted proteomics and biological parts assembly in E. coli to optimize the biosynthesis of an anti-malarial drug precursor, amorpha-4,11-diene

scholarly article by Han Min Woo et al published November 2013 in Chemical Engineering Science

Application of targeted proteomics to metabolically engineered Escherichia coli

scientific article published in April 2012

Arabidopsis Deficient in Cutin Ferulate encodes a transferase required for feruloylation of ω-hydroxy fatty acids in cutin polyester

scientific article published on 8 December 2011

Arabinosylation of a Yariv-precipitable cell wall polymer impacts plant growth as exemplified by the Arabidopsis glycosyltransferase mutant ray1

scientific article published on 09 February 2013

Artificial Biosynthetic Pathway for an Unnatural Terpenoid with an Iridiumcontaining P450

Assay for lignin breakdown based on lignin films: insights into the Fenton reaction with insoluble lignin

Assembly and Multiplex Genome Integration of Metabolic Pathways in Yeast Using CasEMBLR.

scientific article published in January 2018

Author Correction: Building a global alliance of biofoundries

scientific article published on 11 July 2019

Author Correction: Complete biosynthesis of cannabinoids and their unnatural analogues in yeast

scientific article published on 01 April 2020

Automated "Cells-To-Peptides" Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes

scientific article published on 30 August 2019

Autonomous control of metabolic state by a quorum sensing (QS)-mediated regulator for bisabolene production in engineered E. coli.

scientific article

Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli

scientific article published on 23 November 2006

Base-Catalyzed Depolymerization of Solid Lignin-Rich Streams Enables Microbial Conversion

BglBrick vectors and datasheets: A synthetic biology platform for gene expression.

scientific article

BglBricks: A flexible standard for biological part assembly

scientific article

Bio-based production of fuels and industrial chemicals by repurposing antibiotic-producing type I modular polyketide synthases: opportunities and challenges

scientific article published on 16 November 2016

Biochemical Characterization of β-Amino Acid Incorporation in Fluvirucin B Biosynthesis

scientific article published on 14 May 2018

Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions

scientific article

Biochemical production of ethanol and fatty acid ethyl esters from switchgrass: A comparative analysis of environmental and economic performance

Biofuel alternatives to ethanol: pumping the microbial well

scientific article published on 28 May 2008

Biosensors and their applications in microbial metabolic engineering.

scientific article published on 12 June 2011

Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification

article

Biosynthesis of plant isoprenoids: perspectives for microbial engineering.

scientific article published on January 2009

Broad substrate specificity of the loading didomain of the lipomycin polyketide synthase

scientific article

Building a global alliance of biofoundries

scientific article published on 09 May 2019

CRISPR/Cas9 advances engineering of microbial cell factories.

scientific article

Capillary electrophoresis-fourier transform ion cyclotron resonance mass spectrometry for the identification of cationic metabolites via a pH-mediated stacking-transient isotachophoretic method

scientific article published on 3 April 2008

Carotenoid-based phenotypic screen of the yeast deletion collection reveals new genes with roles in isoprenoid production

scientific article

CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae.

scientific article published on 17 March 2015

CasPER, a method for directed evolution in genomic contexts using mutagenesis and CRISPR/Cas9

scientific article published on 05 July 2018

Catabolite repression of the propionate catabolic genes in Escherichia coli and Salmonella enterica: evidence for involvement of the cyclic AMP receptor protein

scientific article

Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough

scientific article

Central metabolism in Mycobacterium smegmatis during the transition from O2-rich to O2-poor conditions as studied by isotopomer-assisted metabolite analysis

scientific article published on 9 April 2009

Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution

scientific article published on 11 April 2013

Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.

scientific article published on 19 May 2016

Chemical synthesis using synthetic biology

scientific article published on 31 August 2009

Chemoinformatic-guided engineering of polyketide synthases

scientific article published on 15 May 2020

Cloning of casbene and neocembrene synthases from Euphorbiaceae plants and expression in Saccharomyces cerevisiae.

scientific article

ClusterCAD: a computational platform for type I modular polyketide synthase design.

scientific article published on 11 October 2017

Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes

scientific article published on 16 July 2006

Combinatorial expression of bacterial whole mevalonate pathway for the production of beta-carotene in E. coli.

scientific article published on 29 January 2009

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism

scientific article published on 25 September 2020

Commodity Chemicals From Engineered Modular Type I Polyketide Synthases

scientific article published on 26 May 2018

Complete Reductive Dechlorination of Trichloroethene by a Groundwater Microbial Consortiuma ⬇️

scientific article published on November 21, 1997

Complete biosynthesis of cannabinoids and their unnatural analogues in yeast

scientific article published on 27 February 2019

Comprehensive Structural and Biochemical Analysis of the Terminal Myxalamid Reductase Domain for the Engineered Production of Primary Alcohols

scientific article

Comprehensive in Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production.

scientific article published on 22 August 2016

Computational protein design enables a novel one-carbon assimilation pathway.

scientific article

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis.

scientific article published on 4 January 2018

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase

scientific article

Construction of a part of a 3-hydroxypropionate cycle for heterologous polyketide biosynthesis in Escherichia coli.

scientific article published on 28 November 2012

Controlling Messenger RNA Stability in Bacteria: Strategies for Engineering Gene Expression ⬇️

scientific article published on November 1, 1997

Controlling the Metabolic Flux through the Carotenoid Pathway Using Directed mRNA Processing and Stabilization ⬇️

scientific article published on October 1, 2001

Correction to: Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae

scientific article published on 29 December 2019

Correction: Global analysis of host response to induction of a latent bacteriophage.

scientific article published on 6 August 2013

Correction: Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli.

scientific article published on 15 January 2014

Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production.

scientific article published in May 2014

Coupling S-adenosylmethionine-dependent methylation to growth: Design and uses

scientific article published on 11 March 2019

CrEdit: CRISPR mediated multi-loci gene integration in Saccharomyces cerevisiae.

scientific article published on 7 July 2015

Cyanobacterial carbon metabolism: Fluxome plasticity and oxygen dependence

scientific article published on 14 March 2017

De novo DNA synthesis using polymerase-nucleotide conjugates

scientific article published on 18 June 2018

De novo synthesis of the sedative valerenic acid in Saccharomyces cerevisiae

scientific article published on 12 March 2018

Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions

scientific article published on 22 December 2016

Definitive alkene identification needed for in vitro studies with ole (olefin biosynthesis) proteins

scientific article published on July 2011

Design and Construction of a Double Inversion Recombination Switch for Heritable Sequential Genetic Memory

Design and construction of a double inversion recombination switch for heritable sequential genetic memory

scientific article

Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids ⬇️

scientific article published on March 25, 2012

Design, Engineering, and Characterization of Prokaryotic Ligand-Binding Transcriptional Activators as Biosensors in Yeast

scientific article published in January 2018

Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools

scientific article (publication date: October 2012)

Designed divergent evolution of enzyme function

scientific article

Development of Next Generation Synthetic Biology Tools for Use in Streptomyces venezuelae.

scientific article published on 7 September 2016

Development of a Transcription Factor-Based Lactam Biosensor

scientific article published on 20 December 2016

Development of a native Escherichia coli induction system for ionic liquid tolerance

scientific article

Development of an E. coli strain for one-pot biofuel production from ionic liquid pretreated cellulose and switchgrass

article

Development of an integrated approach for α-pinene recovery and sugar production from loblolly pine using ionic liquids

article by Gabriella Papa et al published 2017 in Green Chemistry

Development of an orthogonal fatty acid biosynthesis system in E. coli for oleochemical production.

scientific article published on 15 April 2015

Development of biosensors and their application in metabolic engineering.

scientific article published on 4 June 2015

DeviceEditor visual biological CAD canvas

scientific article

Dibenzothiophene biodesulfurization pathway improvement using diagnostic GFP fusions

scientific article

Dietary Change Enables Robust Growth-Coupling of Heterologous Methyltransferase Activity in Yeast

scientific article published on 12 November 2020

Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters

scientific article

Discovery of enzymes for toluene synthesis from anoxic microbial communities.

scientific article published on 19 March 2018

Diterpene production in Mycobacterium tuberculosis ⬇️

scientific article

Divergent mechanistic routes for the formation of gem-dimethyl groups in the biosynthesis of complex polyketides.

scientific article published on 7 January 2015

Draft Genome Sequence of Agrobacterium fabrum ARqua1

scientific article published on 02 July 2020

Dual-selection for evolution of in vivo functional aptazymes as riboswitch parts

scientific article published in January 2014

EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes into Saccharomyces cerevisiae via CRISPR-Cas9

scientific article published on 11 May 2016

Edible mycelium bioengineered for enhanced nutritional value and sensory appeal using a modular synthetic biology toolkit

scientific article published in 2024

Effect of copy number and mRNA processing and stabilization on transcript and protein levels from an engineered dual-gene operon

scientific article

Effect of gene location, mRNA secondary structures, and RNase sites on expression of two genes in an engineered operon

scientific article published in December 2002

Effect of glucose or glycerol as the sole carbon source on gene expression from the Salmonella prpBCDE promoter in Escherichia coli.

scientific article published in November 2006

Effects of the sequence and size of non-polar residues on self-assembly of amphiphilic peptides

scientific article published in September 2005

Effects of transcription induction homogeneity and transcript stability on expression of two genes in a constructed operon ⬇️

scientific article published on December 1, 2001

Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme

scientific article

End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis

scientific article

Endoribonuclease-Based Two-Component Repressor Systems for Tight Gene Expression Control in Plants

scientific article published on 17 January 2017

Engineered Production of Short-Chain Acyl-Coenzyme A Esters in Saccharomyces cerevisiae.

scientific article published on 2 March 2018

Engineered Reversal of Function in Glycolytic Yeast Promoters

scientific article published on 15 May 2019

Engineered polyketides: Synergy between protein and host level engineering.

scientific article published on 7 September 2017

Engineering Bacteria to Catabolize the Carbonaceous Component of Sarin: Teaching E. coli to Eat Isopropanol

scientific article published on 12 July 2016

Engineering Cellular Metabolism

scientific article

Engineering Escherichia coli for production of functionalized terpenoids using plant P450s

scientific article published on 15 April 2007

Engineering Plant Synthetic Pathways for the Biosynthesis of Novel Antifungals

scientific article published on 20 July 2020

Engineering a Polyketide Synthase for In Vitro Production of Adipic Acid.

scientific article published on 26 October 2015

Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae

scientific article published on 27 October 2016

Engineering a mevalonate pathway in Escherichia coli for production of terpenoids

scientific article (publication date: July 2003)

Engineering an NADPH/NADP+ Redox Biosensor in Yeast.

scientific article published on 15 July 2016

Engineering cotton (+)-delta-cadinene synthase to an altered function: germacrene D-4-ol synthase

scientific article published in January 2006

Engineering dynamic pathway regulation using stress-response promoters.

scientific article

Engineering glucose metabolism of Escherichia coli under nitrogen starvation

scientific article

Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks

scientific article published on 9 June 2017

Engineering life: building a fab for biology

scientific article

Engineering microbial biofuel tolerance and export using efflux pumps

scientific article

Engineering of L-tyrosine oxidation in Escherichia coli and microbial production of hydroxytyrosol.

scientific article published on 29 August 2012

Engineering of a tyrosol-producing pathway, utilizing simple sugar and the central metabolic tyrosine, in Escherichia coli

scientific article published on 20 January 2012

Engineering of bacterial methyl ketone synthesis for biofuels

scientific article published on 28 October 2011

Engineering of synthetic, stress-responsive yeast promoters

scientific article published on 20 June 2016

Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids.

scientific article published on 17 November 2006

Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast

scientific article

Engineering synergy in biotechnology

scientific article published on May 2014

Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls

scientific article published on 14 January 2015

Engineering terpene biosynthesis in Streptomyces for production of the advanced biofuel precursor bisabolene.

scientific article published on 9 July 2014

Engineering the lycopene synthetic pathway in E. coli by comparison of the carotenoid genes of Pantoea agglomerans and Pantoea ananatis

scientific article published on 18 November 2006

Engineering triterpene production in Saccharomyces cerevisiae-beta-amyrin synthase from Artemisia annua

scientific article

Engineering yeast metabolism for the discovery and production of polyamines and polyamine analogues

scientific article published on 17 June 2021

Engineering β-oxidation in Yarrowia lipolytica for methyl ketone production

scientific article published on 28 May 2018

Enhanced fatty acid production in engineered chemolithoautotrophic bacteria using reduced sulfur compounds as energy sources.

scientific article published on 5 July 2016

Enhanced lycopene production in Escherichia coli engineered to synthesize isopentenyl diphosphate and dimethylallyl diphosphate from mevalonate

scientific article published in August 2006

Enhanced production of taxadiene in Saccharomyces cerevisiae

scientific article published on 02 November 2020

Enhancing Terpene yield from sugars via novel routes to 1-deoxy-d-xylulose 5-phosphate.

scientific article

Enhancing fatty acid production by the expression of the regulatory transcription factor FadR.

scientific article published on 28 September 2012

Enzyme analysis of the polyketide synthase leads to the discovery of a novel analog of the antibiotic α-lipomycin.

scientific article

Enzyme immobilization via silaffin-mediated autoencapsulation in a biosilica support

scientific article published in March 2009

Erratum to: Isoprenoid Drugs, Biofuels, and Chemicals--Artemisinin, Farnesene, and Beyond

scientific article published on 01 January 2015

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

scientific article published on 18 April 2017

Evaluation of the effects of various culture conditions on Cr(VI) reduction by Shewanella oneidensis MR-1 in a novel high-throughput mini-bioreactor.

scientific article published in September 2006

Evolution-guided engineering of small-molecule biosensors

scientific article published on 01 January 2020

Evolved hexose transporter enhances xylose uptake and glucose/xylose co-utilization in Saccharomyces cerevisiae.

scientific article

Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants.

scientific article published on 10 October 2016

Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast.

scientific article

Exploiting the Substrate Promiscuity of Hydroxycinnamoyl-CoA:Shikimate Hydroxycinnamoyl Transferase to Reduce Lignin

scientific article published on 8 February 2016

Exploring small-scale chemostats to scale up microbial processes: 3-hydroxypropionic acid production in S. cerevisiae

scientific article published on 11 March 2019

Expression of S-adenosylmethionine Hydrolase in Tissues Synthesizing Secondary Cell Walls Alters Specific Methylated Cell Wall Fractions and Improves Biomass Digestibility

scientific article published on 19 July 2016

Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency.

scientific article published on 13 January 2015

Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation

scientific article published on 17 March 2009

Farnesol production from Escherichia coli by harnessing the exogenous mevalonate pathway.

scientific article published in October 2010

Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid

scientific article published on 27 April 2007

Flux-Enabled Exploration of the Role of Sip1 in Galactose Yeast Metabolism

scientific article

From fields to fuels: recent advances in the microbial production of biofuels.

scientific article

Functional analysis of the fatty acid and alcohol metabolism of Pseudomonas putida using RB-TnSeq

scientific article published on 21 August 2020

Functional characterization of four sesquiterpene synthases from Ricinus communis (castor bean).

scientific article

Functional characterization of the origin of replication of pRN1 from Sulfolobus islandicus REN1H1.

scientific article

Functional genomic study of exogenous n-butanol stress in Escherichia coli

scientific article

Functional responses of methanogenic archaea to syntrophic growth

scientific article

Genes involved in long-chain alkene biosynthesis in Micrococcus luteus

scientific article

Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale

scientific article published on 23 October 2020

Global analysis of host response to induction of a latent bacteriophage

scientific article

Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation

scientific article

Heterologous Gene Expression of N-Terminally Truncated Variants of LipPks1 Suggests a Functionally Critical Structural Motif in the N-terminus of Modular Polyketide Synthase.

scientific article published on 13 October 2017

Heterologous production of polyketides by modular type I polyketide synthases in Escherichia coli

scientific article published on 13 January 2012

Heterologous protein production in Escherichia coli using the propionate-inducible pPro system by conventional and auto-induction methods

scientific article published on 27 June 2008

High titer methyl ketone production with tailored Pseudomonas taiwanensis VLB120

scientific article published on 15 August 2020

High-Resolution Scanning of Optimal Biosensor Reporter Promoters in Yeast

scientific article published on 31 January 2020

High-level production of amorpha-4,11-diene in a two-phase partitioning bioreactor of metabolically engineered Escherichia coli

scientific article

High-level production of amorpha-4,11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli

scientific article

High-throughput enzyme screening platform for the IPP-bypass mevalonate pathway for isopentenol production.

scientific article

High-titer production of lathyrane diterpenoids from sugar by engineered Saccharomyces cerevisiae.

scientific article

HipA-triggered growth arrest and β-lactam tolerance in Escherichia coli are mediated by RelA-dependent ppGpp synthesis.

scientific article published on 10 May 2013

Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough

scientific article published in October 2010

Identification and microbial production of a terpene-based advanced biofuel

scientific article

Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium

scientific article

Identification of isopentenol biosynthetic genes from Bacillus subtilis by a screening method based on isoprenoid precursor toxicity

scientific article

Identification of the intermediates of in vivo oxidation of 1 ,4-dioxane by monooxygenase-containing bacteria.

scientific article published in November 2007

Identification, Characterization, and Application of a Highly Sensitive Lactam Biosensor from Pseudomonas putida

scientific article published on 02 January 2020

Impact of Pretreatment Technologies on Saccharification and Isopentenol Fermentation of Mixed Lignocellulosic Feedstocks

article published in 2015

Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris

scientific article published on 6 May 2010

Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production

article

Importance of systems biology in engineering microbes for biofuel production

scientific article published on June 2008

Improved assembly of multimeric genes for the biosynthetic production of protein polymers

scientific article published in July 2002

Improving methyl ketone production in E. coli by heterologous expression of NADH-dependent FabG.

scientific article published on 7 February 2018

Improving microbial biogasoline production in Escherichia coli using tolerance engineering.

scientific article

In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community.

scientific article published on 10 August 2016

In vitro analysis of carboxyacyl substrate tolerance in the loading and first extension modules of borrelidin polyketide synthase.

scientific article published on 16 September 2014

Increased beta-carotene production in recombinant Escherichia coli harboring an engineered isoprenoid precursor pathway with mevalonate addition

scientific article published on 15 May 2007

Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid

scientific article

Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer.

scientific article published on 20 March 2018

Insight into the Mechanism of Phenylacetate Decarboxylase (PhdB), a Toluene-Producing Glycyl Radical Enzyme

scientific article published on 07 November 2019

Insights into polyketide biosynthesis gained from repurposing antibiotic-producing polyketide synthases to produce fuels and chemicals

scientific article published on June 2016

Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli.

scientific article published on 9 March 2018

Integrating biological redesign: where synthetic biology came from and where it needs to go

scientific article

Interlaboratory study to evaluate the robustness of capillary electrophoresis-mass spectrometry for peptide mapping.

scientific article

Intracellular cellobiose metabolism and its applications in lignocellulose-based biorefineries

scientific article published on 04 May 2017

Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations

scientific article

Investigation of Bar-seq as a method to study population dynamics of Saccharomyces cerevisiae deletion library during bioreactor cultivation

scientific article published on 18 August 2020

Investigation of Indigoidine Synthetase Reveals Conserved Active Site Base Residue of Nonribosomal Peptide Synthetase Oxidases

scientific article published on 08 June 2020

Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli

scientific article

Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses

scientific article published on 12 June 2009

Isolation and Characterization of Bacterial Cellulase Producers for Biomass Deconstruction: A Microbiology Laboratory Course

scientific article published on 26 July 2019

Isolation and characterization of novel mutations in the pSC101 origin that increase copy number.

scientific article

Isopentenyl diphosphate (IPP)-bypass mevalonate pathways for isopentenol production

scientific article

Isoprenoid drugs, biofuels, and chemicals--artemisinin, farnesene, and beyond

scientific article published on January 2015

Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein

scientific article published on 8 January 2008

Kinetics of BTEX Degradation by a Nitrate‐reducing Mixed Culturea ⬇️

scientific article published on November 21, 1997

Kinetics of phosphomevalonate kinase from Saccharomyces cerevisiae

scientific article (publication date: 2014)

Laser spectroscopic studies of interactions of UVI with bacterial phosphate species

scientific article

Lepidopteran mevalonate pathway optimization in Escherichia coli efficiently produces isoprenol analogs for next-generation biofuels

scientific article published in 2021

Leveraging host metabolism for bisdemethoxycurcumin production in Pseudomonas putida

scientific article published on 17 December 2019

Leveraging microbial biosynthetic pathways for the generation of 'drop-in' biofuels.

scientific article

Lipid engineering reveals regulatory roles for membrane fluidity in yeast flocculation and oxygen-limited growth

scientific article

Liquid Chromatography and Mass Spectrometry Analysis of Isoprenoid Intermediates in Escherichia coli

scientific article published on 01 January 2019

Loss of Inositol Phosphorylceramide Sphingolipid Mannosylation Induces Plant Immune Responses and Reduces Cellulose Content in Arabidopsis

scientific article published on 28 November 2016

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli

scientific article

Mass spectrometry-based microbial metabolomics.

scientific article

Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Lysine Metabolism

scientific article published on 07 May 2019

Mechanistic Analysis of an Engineered Enzyme that Catalyzes the Formose Reaction.

scientific article

Mechanistic Modeling of Prokaryotic mRNA Decay ⬇️

scientific article published on November 21, 1997

Membrane proteomics of phagosomes suggests a connection to autophagy

scholarly article

Memory in microbes: quantifying history-dependent behavior in a bacterium

scientific article

Metabolic engineering delivers next-generation biofuels

scientific article published in March 2008

Metabolic engineering for the high-yield production of isoprenoid-based C₅ alcohols in E. coli.

scientific article published on 8 June 2015

Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production

scientific article published on 29 May 2013

Metabolic engineering of Escherichia coli for the biosynthesis of 2-pyrrolidone.

scientific article published on 10 November 2015

Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals

scientific article

Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol

scientific article published on 03 December 2008

Metabolic engineering of microbial pathways for advanced biofuels production.

scientific article

Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels

scientific article

Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism

scientific article published in March 2009

Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly.

scientific article published on 21 November 2013

Metabolite profiling of plastidial deoxyxylulose-5-phosphate pathway intermediates by liquid chromatography and mass spectrometry.

scientific article published on January 2014

Mevalonate Pathway Promiscuity Enables Noncanonical Terpene Production

scientific article published on 02 October 2019

Microbial Synthesis of Pinene

article

Microbial engineering for the production of advanced biofuels

scientific article

Microbial sensors for small molecules: development of a mevalonate biosensor

scientific article published on 15 August 2006

Microbioreactor arrays with parametric control for high-throughput experimentation

scientific article published on 01 February 2004

Microbioreactor arrays with parametric control for high-throughput experimentation.

scientific article

Model-driven engineering of RNA devices to quantitatively program gene expression

scientific article published in December 2011

Modular 5'-UTR hexamers for context-independent tuning of protein expression in eukaryotes

scientific article published on 01 November 2018

Modular Synthetic Inverters from Zinc Finger Proteins and Small RNAs

scientific article published on 17 February 2016

Modular engineering of L-tyrosine production in Escherichia coli

scientific article published on 21 October 2011

Mono and diterpene production in Escherichia coli

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Morphology of artificial silica matrices formed via autosilification of a silaffin/protein polymer chimera

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Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae.

scientific article published on 28 January 2015

Mutations in Escherichia coli aceE and ribB genes allow survival of strains defective in the first step of the isoprenoid biosynthesis pathway

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Narrowing the gap between the promise and reality of polyketide synthases as a synthetic biology platform.

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Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing

scientific article published in 2022

Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer

scientific article published on 10 August 2019

OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

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Optimising the biosynthesis of oxygenated and acetylated Taxol precursors in Saccharomyces cerevisiae using advanced bioprocessing strategies

scientific article published on 16 September 2020

Optimization of DsRed production in Escherichia coli: effect of ribosome binding site sequestration on translation efficiency.

scientific article published in December 2005

Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases.

scientific article

Optimization of renewable pinene production from the conversion of macroalgae Saccharina latissima.

scientific article published on 28 September 2014

Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli

scientific article published on 06 September 2019

Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene

scientific article

Organelle membrane proteomics reveals differential influence of mycobacterial lipoglycans on macrophage phagosome maturation and autophagosome accumulation

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Overcoming the challenges of cancer drug resistance through bacterial-mediated therapy

scientific article published on 01 December 2019

Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification

scientific article published on 7 February 2013

Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification

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Overlapping Photoprotective Function of Vitamin E and Carotenoids inChlamydomonas ⬇️

scientific article published on November 11, 2011

Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme.

scientific article published on 11 September 2017

PR-PR: cross-platform laboratory automation system

scientific article published on 14 January 2014

PaR-PaR laboratory automation platform

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Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry

scientific article published on 17 November 2006

Pathway engineering by designed divergent evolution

scientific article published on 13 March 2007

Photosynthetic conversion of CO2 to farnesyl diphosphate-derived phytochemicals (amorpha-4,11-diene and squalene) by engineered cyanobacteria.

scientific article published on 22 September 2016

Physical and functional interactions of a monothiol glutaredoxin and an iron sulfur cluster carrier protein with the sulfur-donating radical S-adenosyl-L-methionine enzyme MiaB

scientific article published on 29 March 2013

Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum

scientific article published on 28 April 2015

Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins

scientific article

Precise and reliable gene expression via standard transcription and translation initiation elements

scientific article published on 10 March 2013

Precursor-Directed Combinatorial Biosynthesis of Cinnamoyl, Dihydrocinnamoyl, and Benzoyl Anthranilates in Saccharomyces cerevisiae

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Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering.

scientific article published on 29 December 2014

Probing the Flexibility of an Iterative Modular Polyketide Synthase with Non-Native Substrates in Vitro

scientific article published on 26 June 2018

Production and quantification of sesquiterpenes in Saccharomyces cerevisiae, including extraction, detection and quantification of terpene products and key related metabolites.

scientific article published on 24 July 2014

Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae

scientific article published on 13 December 2018

Production of Odd-Carbon Dicarboxylic Acids in Escherichia coli Using an Engineered Biotin-Fatty Acid Biosynthetic Pathway.

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Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin

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Production of anteiso-branched fatty acids in Escherichia coli; next generation biofuels with improved cold-flow properties.

scientific article published on 22 September 2014

Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli

scientific article published on 28 June 2013

Production of isoprenoid pharmaceuticals by engineered microbes

scientific article

Production of jet fuel precursor monoterpenoids from engineered Escherichia coli.

scientific article

Production of the antimalarial drug precursor artemisinic acid in engineered yeast

scientific article

Production of tranilast [N-(3',4'-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae

scientific article published on 24 October 2010

Programmable polyketide biosynthesis platform for production of aromatic compounds in yeast

scientific article published on 23 January 2020

Programming adaptive control to evolve increased metabolite production.

scientific article published in January 2013

Programming cellular function

scientific article published in November 2005

Propionate-regulated high-yield protein production in Escherichia coli

scientific article published in April 2006

Quantitative estimation of activity and quality for collections of functional genetic elements

scientific article

Quantitative proteomic profiling of host-pathogen interactions: the macrophage response to Mycobacterium tuberculosis lipids

scientific article published on January 2009

Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination

scientific article

Recent applications of synthetic biology tools for yeast metabolic engineering

scientific article published in 2015

Recombinant DNA techniques for bioremediation and environmentally-friendly synthesis ⬇️

scientific article published on April 1, 1998

Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways

scientific article

Redirection of flux through the FPP branch-point in Saccharomyces cerevisiae by down-regulating squalene synthase

scientific article

Regulation of Intracellular Toxic Metals and Other Cations by Hydrolysis of Polyphosphate ⬇️

scientific article published on November 21, 1997

Regulatory control circuits for stabilizing long-term anabolic product formation in yeast

scientific article published on 24 July 2020

Remodeling the isoprenoid pathway in tobacco by expressing the cytoplasmic mevalonate pathway in chloroplasts

scientific article published on 21 November 2011

Renewable production of high density jet fuel precursor sesquiterpenes from

scientific article published on 20 October 2018

Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes.

scientific article

Revisiting Modes of energy generation in sulfate reducing bacteria

Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts

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Robust Characterization of Two Distinct Glutarate Sensing Transcription Factors of Pseudomonas putida l-Lysine Metabolism

scientific article published on 25 September 2019

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach

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Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity

scientific article

Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development.

scientific article published on April 2014

Separation and mass spectrometry in microbial metabolomics

scientific article published on 04 June 2008

Shewanella oneidensis MR-1 fluxome under various oxygen conditions

scientific article published on 10 November 2006

Short-chain ketone production by engineered polyketide synthases in Streptomyces albus ⬇️

scientific article published in Nature Communications

Structural Mechanism of Regioselectivity in an Unusual Bacterial Acyl-CoA Dehydrogenase

scientific article published on 02 January 2020

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases

scientific article published on 21 May 2019

Structure and Function of BorB, the Type II Thioesterase from the Borrelidin Biosynthetic Gene Cluster

scientific article published on 13 April 2020

Structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus

scientific article

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

scientific article

Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics.

scientific article published on 23 May 2006

Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein.

scientific article published in January 2010

Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies

scientific article published on 18 September 2014

Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars

scientific article (publication date: April 2012)

Supplying plant natural products by yeast cell factories

scientific article published in 2022

Switchable ionic liquids based on di-carboxylic acids for one-pot conversion of biomass to an advanced biofuel

article published in 2016

Synergies between synthetic biology and metabolic engineering ⬇️

scientific article published on 05 August 2011

Synthesis of Cycloprodigiosin Identifies the Natural Isolate as a Scalemic Mixture

scientific article published on 26 June 2015

Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli

scientific article

Synthesis: A constructive debate

scientific article published in Nature

Synthetic Enzymology and the Fountain of Youth: Repurposing Biology for Longevity

scientific article published on 12 September 2018

Synthetic and systems biology for microbial production of commodity chemicals.

scientific article

Synthetic biology and the development of tools for metabolic engineering ⬇️

scientific article published on February 1, 2012

Synthetic biology for fundamental biochemical discovery

scientific article published on 31 October 2018

Synthetic biology for microbial production of lipid-based biofuels

scientific article

Synthetic biology of polyketide synthases.

scientific article published on 9 February 2018

Synthetic biology: A global approach

scientific article

Synthetic pathway for production of five-carbon alcohols from isopentenyl diphosphate

scientific article

Synthetic protein scaffolds provide modular control over metabolic flux.

scientific article

System-level perturbations of cell metabolism using CRISPR/Cas9.

scientific article published on 30 March 2017

Targeted proteomics for metabolic pathway optimization.

scientific article published in January 2012

Targeted proteomics for metabolic pathway optimization: application to terpene production.

scientific article published on 5 January 2011

The Design-Build-Test-Learn cycle for metabolic engineering of Streptomycetes

scientific article published in 2021

The Experiment Data Depot: a web-based software tool for biological experimental data storage, sharing, and visualization

scientific article

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

scientific article

The Need for Integrated Approaches in Metabolic Engineering.

scientific article published on 15 August 2016

The Transcriptome and Flux Profiling of Crabtree-Negative Hydroxy Acid-Producing Strains of Saccharomyces cerevisiae Reveals Changes in the Central Carbon Metabolism

scientific article published on 17 May 2019

The effect of ionic liquid cation and anion combinations on the macromolecular structure of lignins

scholarly article by Anthe George et al published 2011 in Green Chemistry

The in vivo synthesis of plant sesquiterpenes by Escherichia coli ⬇️

scientific article (publication date: 5 December 2001)

The response of Pseudomonas putida to complex aromatic-rich fractions from biomass

scientific article published on 11 March 2020

Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases

scientific article published on 15 June 2012

Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough

scientific article

Towards industrial production of isoprenoids in Escherichia coli: lessons learned from CRISPR-Cas9 based optimization of a chromosomally integrated mevalonate pathway.

scientific article published on 26 December 2017

Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

scientific article

Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis.

scientific article

Transcriptional reprogramming in yeast using dCas9 and combinatorial gRNA strategies

scientific article published on 15 March 2017

Transcriptome architecture of the three main lineages of agrobacteria

scientific article published on 21 July 2023

Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state

scientific article

Understanding the role of histidine in the GHSxG acyltransferase active site motif: evidence for histidine stabilization of the malonyl-enzyme intermediate

scientific article

Uranyl precipitation by Pseudomonas aeruginosa via controlled polyphosphate metabolism

scientific article

Use of nonionic surfactants for improvement of terpene production in Saccharomyces cerevisiae.

scientific article

Utilizing a highly responsive gene, yhjX, in E. coli based production of 1,4-butanediol

article

Versatile synthesis of probes for high-throughput enzyme activity screening

scientific article

Viscous control of cellular respiration by membrane lipid composition

scientific article

Whole-cell biocatalytic and de novo production of alkanes from free fatty acids in Saccharomyces cerevisiae

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XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.

scientific article

j5 DNA assembly design automation software

scientific article

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