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Authors whose works are in public domain in at least one jurisdiction

List of works by Jens B. Nielsen

13C tracer experiments and metabolite balancing for metabolic flux analysis: comparing two approaches

scientific article published in April 1998

A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

scientific article published on 11 January 2011

A Simple morphologically structured model describing the growth of filamentous microorganisms

article

A Single Chromosome Strain of S. cerevisiae Exhibits Diminished Ethanol Metabolism and Tolerance

scientific article published on 23 August 2020

A Systematic Investigation of the Malignant Functions and Diagnostic Potential of the Cancer Secretome

A bacterial platform for producing aromatic esters from glycerol

scientific article published on 5 December 2024

A community-driven global reconstruction of human metabolism. ⬇️

scientific article

A comparison of direct infusion MS and GC-MS for metabolic footprinting of yeast mutants

scientific article published on 01 April 2007

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

scientific article

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

scientific article published on 08 August 2019

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

scientific article

A dedicated database system for handling multi-level data in systems biology

scientific article

A functional genomics approach using metabolomics andin silicopathway analysis

scientific article published on 01 September 2002

A gRNA-tRNA array for CRISPR-Cas9 based rapid multiplexed genome editing in Saccharomyces cerevisiae ⬇️

scientific article

A maternal diet of fatty fish reduces body fat of offspring compared with a maternal diet of beef and a post-weaning diet of fish improves insulin sensitivity and lipid profile in adult C57BL/6 male mice

scientific article published on 26 June 2013

A molecular genetic toolbox for Yarrowia lipolytica

scientific article published on 03 January 2017

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

scientific article published in April 2021

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

scientific article published on 9 April 2021

A simple and reliable method for the determination of cellular RNA content

article by S. Benthin et al published 1991 in Biotechnology Letters

A single chromosome strain of S. cerevisiae exhibits diminished ethanol metabolism and tolerance

scientific article published on 22 September 2021

A single chromosome strain of S. cerevisiae exhibits diminished ethanol metabolism and tolerance

A single chromosome strain of S. cerevisiae exhibits diminished ethanol metabolism and tolerance

scientific article published on 26 April 2021

A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae

scientific article published in January 2007

A systems-level approach for metabolic engineering of yeast cell factories.

scientific article published on 10 January 2012

A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species

scholarly article

A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study

scientific article published on 16 February 2013

ANT: Software for Generating and Evaluating Degenerate Codons for Natural and Expanded Genetic Codes.

scientific article published on 30 April 2015

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast

scientific article

Absolute yeast mitochondrial proteome quantification reveals trade-off between biosynthesis and energy generation during diauxic shift

scientific article published on 17 March 2020

Ach1 is involved in shuttling mitochondrial acetyl units for cytosolic C2 provision in Saccharomyces cerevisiae lacking pyruvate decarboxylase

scientific article published on 6 April 2015

Acoustic off-gas analyser for bioreactors: Precision, accuracy and dynamics of detection

Adaptation to different types of stress converge on mitochondrial metabolism

scientific article

Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

scientific article published on 21 December 2021

Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus

scientific article

Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain

scientific article published on 8 August 2015

Adaptively evolved yeast mutants on galactose show trade-offs in carbon utilization on glucose

scientific article published on 29 January 2013

Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

scientific article published on 6 July 2020

Adipose tissue resting energy expenditure and expression of genes involved in mitochondrial function are higher in women than in men.

scientific article published on 21 December 2012

Advanced biofuel production by the yeast Saccharomyces cerevisiae

scientific article published on 27 April 2013

Advances in metabolic engineering of yeast Saccharomyces cerevisiae for production of chemicals

scientific article published on 24 February 2014

Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks ⬇️

scientific article published on March 28, 2013

Advancing biotechnology with CRISPR/Cas9: recent applications and patent landscape

scientific article

Advancing metabolic engineering through systems biology of industrial microorganisms

scientific article published on 25 August 2015

Aerobic and anaerobic ethanol production by Mucor circinelloides during submerged growth

scientific article published on 16 July 2003

Aerobic glucose metabolism of Saccharomyces kluyveri: growth, metabolite production, and quantification of metabolic fluxes

scientific article published in January 2002

Aerobic physiology of redox-engineered Saccharomyces cerevisiae strains modified in the ammonium assimilation for increased NADPH availability

scientific article published in October 2003

Affibody Scaffolds Improve Sesquiterpene Production in Saccharomyces cerevisiae

scientific article

Alleviation of glucose repression of maltose metabolism by MIG1 disruption in Saccharomyces cerevisiae

scientific article

Altering the expression of two chitin synthase genes differentially affects the growth and morphology of Aspergillus oryzae

scientific article published in December 2002

An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans.

scientific article

An atlas of human metabolism

scientific article published on 24 March 2020

An expanded role for microbial physiology in metabolic engineering and functional genomics: moving towards systems biology

scientific article published on May 1, 2002

An improved FIA-system for measuring ?-amylase in cultivation media

Anaerobic and aerobic batch cultivations of Saccharomyces cerevisiae mutants impaired in glycerol synthesis

scientific article published in 2000

Anaerobic and aerobic batch cultivations of Saccharomyces cerevisiae mutants impaired in glycerol synthesis

scientific article published on 01 March 2000

Anaerobic α-amylase production and secretion with fumarate as the final electron acceptor in Saccharomyces cerevisiae

scientific article

Analysis of Aspergillus nidulans metabolism at the genome-scale

scientific article

Analysis of Penicillin V biosynthesis during fed-batch cultivations with a high-yielding strain of Penicillium chrysogenum

scientific article published in 1995

Analysis of acyl CoA ester intermediates of the mevalonate pathway in Saccharomyces cerevisiae

scientific article published on 22 September 2004

Analysis of flux estimates based on (13)C-labelling experiments

scientific article published in June 2002

Analysis of genome-wide coexpression and coevolution of Aspergillus oryzae and Aspergillus niger

scientific article published on April 2010

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.

scientific article

Analysis of penicillin V biosynthesis during fed-batch cultivations with a high-yielding strain of Penicillium chrysogenum

scientific article published on 01 April 1995

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

scientific article published on 05 December 2013

Analytical performance of a standardized kit for mass spectrometry-based measurements of human glycosaminoglycans

scientific article published in July 2021

Anomeric specificity of glucose uptake systems in Lactococcus cremoris, Escherichia coli, and Saccharomyces cerevisiae: mechanism, kinetics, and implications

scientific article published in June 1992

Antibiotic overproduction in Streptomyces coelicolor A3 2 mediated by phosphofructokinase deletion ⬇️

scientific article published on 7 July 2008

Antisense silencing of the creA gene in Aspergillus nidulans.

scientific article

Applications of computational modeling in metabolic engineering of yeast

article

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

scientific article

Aspergilli: systems biology and industrial applications

scientific article published on 14 August 2012

Assessing the Human Gut Microbiota in Metabolic Diseases ⬇️

scientific article published on October 1, 2013

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

scientific article published on 22 October 2020

Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

scientific article published on 21 December 2020

Author Correction: Metabolic engineering of Saccharomyces cerevisiae for production of very long chain fatty acid-derived chemicals

scientific article published in Nature Communications

Autotrophic yeast

scientific article published on 16 July 2024

BIOENGINEERING. Yeast cell factories on the horizon

scientific article published in September 2015

Balanced globin protein expression and heme biosynthesis improve production of human hemoglobin in Saccharomyces cerevisiae

scientific article published on 2 November 2013

Balanced trafficking between the ER and the Golgi apparatus increases protein secretion in yeast

scientific article

Barriers and opportunities in bio-based production of hydrocarbons

article

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

scientific article

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

scientific article published on 24 March 2020

Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae

scientific article published on 23 February 2021

BioMet Toolbox: genome-wide analysis of metabolism

scientific article published on 18 May 2010

Biobased organic acids production by metabolically engineered microorganisms

scientific article

Biobased production of alkanes and alkenes through metabolic engineering of microorganisms

scientific article

Biofuels. Altered sterol composition renders yeast thermotolerant

scientific article

Biofuels: chimeric synthetic pathways

scientific article

Biosynthesis of glyoxylate from glycine in Saccharomyces cerevisiae

scientific article published in May 2005

Biosynthetic Studies of the Glycopeptide Teicoplanin by1H and13C NMR

scientific article published in Journal of Biological Chemistry

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport

scientific article published on 5 February 2024

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport

scientific article published on 16 November 2022

Branching is coordinated with mitosis in growing hyphae of Aspergillus nidulans

scientific article published on 01 October 2003

Bridging the gaps in systems biology

scientific article published on 13 April 2014

Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity

scientific article

Building blocks are synthesized on demand during the yeast cell cycle

scientific article published on 25 March 2020

CODY enables quantitatively spatiotemporal predictions on in vivo gut microbial variability induced by diet intervention

scientific article published on 30 March 2021

Can yeast systems biology contribute to the understanding of human disease?

scientific article published on 16 September 2008

Cancer Metabolism: A Modeling Perspective

scientific article

Carbon catabolite repression of invertase during batch cultivations of Saccharomyces cerevisiae : the role of glucose, fructose, and mannose

scientific article published on 01 November 1998

Cell factory engineering for improved production of natural products

article

Challenges in modeling the human gut microbiome

scientific article published on 01 August 2018

Changes in lipid metabolism convey acid tolerance in

Changes of in vivo fluxes through central metabolic pathways during the production of nystatin by Streptomyces noursei in batch culture

scientific article

Characterisation of the Mucor circinelloides regulated promoter gpd1P.

scientific article

Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae

scientific article published on 01 October 2009

Characterization of cross-species transcription and splicing from Penicillium to Saccharomyces cerevisiae

scientific article published on 13 August 2021

Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae

scientific article published on November 2010

Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods

scientific article

Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis

scientific article published on 31 December 2018

Characterization of mixing in stirred tank bioreactors equipped with rushton turbines

scientific article published on 01 October 1994

Characterization of the Mucor circinelloides life cycle by on-line image analysis

scientific article published in January 2003

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma

scientific article

Cleanup and Analysis of Sugar Phosphates in Biological Extracts by Using Solid-Phase Extraction and Anion-Exchange Chromatography with Pulsed Amperometric Detection

scientific article published on 01 July 1998

Cloning and characterization of oah, the gene encoding oxaloacetate hydrolase in Aspergillus niger

scientific article

Cocoa butter-like lipid production ability of non-oleaginous and oleaginous yeasts under nitrogen-limited culture conditions

scientific article published on 6 February 2017

Codon usage variability determines the correlation between proteome and transcriptome fold changes ⬇️

scientific article published on February 25, 2011

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

scientific article published on 01 October 2021

Combined metabolic engineering of precursor and co-factor supply to increase α-santalene production by Saccharomyces cerevisiae

scientific article

Combining substrate specificity analysis with support vector classifiers reveals feruloyl esterase as a phylogenetically informative protein group

scientific article (publication date: 22 September 2010)

Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 ⬇️

scientific article

Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)

scientific article published on 17 December 2019

Comparative metabolic capabilities for Micrococcus luteus NCTC 2665, the "Fleming" strain, and actinobacteria

scientific article published on 9 June 2011

Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains

scientific article

Comparative transcriptomic approach to investigate differences in wine yeast physiology and metabolism during fermentation

scientific article published on 21 August 2009

Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains.

scientific article published on 31 October 2017

Compartment model concept used in the design of fermentation with recombinant microorganisms

scientific article published on 01 August 1989

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D.

scientific article

Complex I is bypassed during high intensity exercise

scientific article published on 07 November 2019

Computational biology predicts metabolic engineering targets for increased production of 102 valuable chemicals in yeast

scientific article published on 3 February 2023

Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

scientific article published on 15 October 2021

Construction and characterization of an oxalic acid nonproducing strain of Aspergillus niger

scientific article published in January 2000

Construction of Mini-Chemostats for High-throughput Strain Characterization

scientific article published on 04 February 2019

Continuous cultivation of Penicillium chrysogenum. Growth on glucose and penicillin production

scientific article published on 01 September 1995

Continuous cultivations of a Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus: Growth yields and morphological characterization

scientific article

Control of fluxes towards antibiotics and the role of primary metabolism in production of antibiotics

scientific article

Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors

scientific article

Correlation of cell growth and heterologous protein production by Saccharomyces cerevisiae.

scientific article

Coupled incremental precursor and co-factor supply improves 3-hydroxypropionic acid production in Saccharomyces cerevisiae

scientific article

CreA influences the metabolic fluxes of Aspergillus nidulans during growth on glucose and xylose

scientific article published in July 2005

Current Status of COVID-19 Therapies and Drug Repositioning Applications

scientific article published on 20 June 2020

Current status of systems biology in Aspergilli

scientific article published on 19 July 2008

Cyclization of alpha-aminoadipic acid into the the delta-lactam 6-oxo-piperidine-2-carboxylic acid by Penicillium chrysogenum

scientific article published on February 1998

DCEO Biotechnology: Tools To Design, Construct, Evaluate, and Optimize the Metabolic Pathway for Biosynthesis of Chemicals.

scientific article

De novo biosynthesis of bioactive isoflavonoids by engineered yeast cell factories

scientific article published on 19 October 2021

De novo production of protoberberine and benzophenanthridine alkaloids through metabolic engineering of yeast

scientific article published on 9 October 2024

De novo production of resveratrol from glucose or ethanol by engineered Saccharomyces cerevisiae

scientific article

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

scientific article published on 26 March 2012

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

scientific article published on 01 December 2020

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction

scientific article published on 16 June 2022

Defining the human adipose tissue proteome to reveal metabolic alterations in obesity

scientific article published on 25 September 2014

Defining the human gallbladder proteome by transcriptomics and affinity proteomics

scholarly article by Caroline Kampf published in October 2014

Degradation of pencillin-V in fermentation media

scientific article published on 01 June 1994

Deletion of RTS1, encoding a regulatory subunit of protein phosphatase 2A, results in constitutive amino acid signaling via increased Stp1p processing

scientific article published in January 2006

Derepression of galactose metabolism in melibiase producing bakers' and distillers' yeast.

scientific article published in June 1999

Design and application of genome-scale reconstructed metabolic models

scientific article published in January 2008

Development of fungal cell factories for the production of secondary metabolites: Linking genomics and metabolism

scientific article

Different Routes of Protein Folding Contribute to Improved Protein Production in Saccharomyces cerevisiae

scientific article published on 10 November 2020

Different expression systems for production of recombinant proteins in Saccharomyces cerevisiae

scientific article published on 17 January 2012

Discriminating Benign from Malignant Lung Diseases Using Plasma Glycosaminoglycans and Cell-Free DNA

scientific article published on 10 September 2024

Disruption of the NADPH-dependent glutamate dehydrogenase affects the morphology of two industrial strains of Penicillium chrysogenum

scientific article published on 7 January 2009

Diversion of flux toward sesquiterpene production in Saccharomyces cerevisiae by fusion of host and heterologous enzymes

scientific article

Do genome-scale models need exact solvers or clearer standards?

scientific article published on 14 October 2015

Draft Genome Sequences of Five Fungal Strains Isolated from Kefir

scientific article published on 27 May 2021

Drug Repositioning for Effective Prostate Cancer Treatment

scientific article published on 15 May 2018

Dynamic Metabolic Footprinting Reveals the Key Components of Metabolic Network in Yeast Saccharomyces cerevisiae

scientific article

Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene α-santalene in a fed-batch mode

scientific article published on 08 February 2012

Dynamic engineering of 1-alkenes biosynthesis and secretion in yeast

scientific article published on 28 December 2017

Dynamic regulation of fatty acid pools for improved production of fatty alcohols in Saccharomyces cerevisiae

scientific article published on 15 March 2017

Dynamic13C-labeling experiments prove important differences in protein turnover rate between twoSaccharomyces cerevisiaestrains

scientific article published on 20 July 2012

Dysregulated autophagy in muscle precursor cells from humans with type 2 diabetes

scientific article published on 3 June 2019

Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis

scientific article published on 23 May 2016

EasyClone: method for iterative chromosomal integration of multiple genes in Saccharomyces cerevisiae

scientific article published on 18 November 2013

EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae

scientific article published on 02 March 2016

Economic and environmental impacts of microbial biodiesel ⬇️

scientific article published on September 1, 2013

Editorial

Editorial: Industrial systems biology ⬇️

scientific article published on 01 March 2011

Editorial: Jurij Piškur (1960-2014).

scientific article published in November 2015

Editorial: The Impact of Systems Medicine on Human Health and Disease

scientific article published on 24 November 2016

Editorial: Where is scientific publishing heading?

scientific article

Editorial: yeast synthetic biology

scientific article published on 01 September 2020

Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae

scientific article

Effect of deletion of chitin synthase genes on mycelial morphology and culture viscosity in Aspergillus oryzae

scientific article published on March 2003

Effects of acetoacetyl-CoA synthase expression on production of farnesene in Saccharomyces cerevisiae

scientific article published on 9 February 2017

Effects of nitrogen sources on cell growth and production of nystatin by Streptomyces noursei

scientific article published on 01 December 2000

Efficient protein production by yeast requires global tuning of metabolism

scientific article published on 25 October 2017

Elucidating aromatic acid tolerance at low pH in Saccharomyces cerevisiae using adaptive laboratory evolution

scientific article published on 26 October 2020

Elucidating the interactions between the human gut microbiota and its host through metabolic modeling

scientific article published on 22 April 2014

Elucidating the mode-of-action of compounds from metabolite profiling studies

scientific article published on January 2007

Elucidation of the role of Grr1p in glucose sensing by Saccharomyces cerevisiae through genome-wide transcription analysis

scientific article

Enabling technologies to advance microbial isoprenoid production

scientific article published on January 2015

Enabling the synthesis of medium chain alkanes and 1-alkenes in yeast

scientific article published on 19 September 2017

Energy metabolism controls phenotypes by protein efficiency and allocation

scientific article published on 12 August 2019

Engineering Cellular Metabolism

scientific article

Engineering Lipid Droplet Assembly Mechanisms for Improved Triacylglycerols Accumulation inS. cerevisiae

Engineering Robustness of Microbial Cell Factories

scientific article published on 31 August 2017

Engineering Saccharomyces cerevisiae cells for production of fatty acid-derived biofuels and chemicals

scientific article published in May 2019

Engineering and systems-level analysis of Saccharomyces cerevisiae for production of 3-hydroxypropionic acid via malonyl-CoA reductase-dependent pathway

scientific article

Engineering carboxylic acid reductase for selective synthesis of medium-chain fatty alcohols in yeast

scientific article published on 01 September 2020

Engineering central metabolism - a grand challenge for plant biologists

scientific article published on 22 December 2016

Engineering lipid droplet assembly mechanisms for improved triacylglycerol accumulation in Saccharomyces cerevisiae

scientific article published on 01 September 2018

Engineering of acetyl-CoA metabolism for the improved production of polyhydroxybutyrate in Saccharomyces cerevisiae

scientific article published on 25 September 2012

Engineering of chromosomal wax ester synthase integrated Saccharomyces cerevisiae mutants for improved biosynthesis of fatty acid ethyl esters

scientific article published on 18 April 2014

Engineering of synthetic, stress-responsive yeast promoters

scientific article published on 20 June 2016

Engineering of vesicle trafficking improves heterologous protein secretion in Saccharomyces cerevisiae

scientific article published on 17 January 2012

Engineering synergy in biotechnology

scientific article published on May 2014

Engineering the oxygen sensing regulation results in an enhanced recombinant human hemoglobin production by Saccharomyces cerevisiae.

scientific article published on 26 September 2014

Engineering the protein secretory pathway of enables improved protein production

article published in the Proceedings of the National Academy of Sciences of the United States of America

Engineering yeast for high-level production of stilbenoid antioxidants.

scientific article

Engineering yeast metabolism for production of terpenoids for use as perfume ingredients, pharmaceuticals and biofuels

scientific article published on 31 October 2017

Engineering yeast metabolism for the discovery and production of polyamines and polyamine analogues

scientific article published on 17 June 2021

Engineering yeast phospholipid metabolism for de novo oleoylethanolamide production

scientific article published on 16 December 2019

Engineering yeast to produce plant-derived anti-obesity agent

scientific article published on 28 August 2023

Enhanced amino acid utilization sustains growth of cells lacking Snf1/AMPK.

scientific article published on 2 April 2015

Enhanced citrate production through gene insertion in Aspergillus niger

scientific article published on 17 November 2007

Enhanced ethanol production and reduced glycerol formation in fps1∆ mutants of Saccharomyces cerevisiae engineered for improved redox balancing.

scientific article published on 11 December 2014

Enhancement of farnesyl diphosphate pool as direct precursor of sesquiterpenes through metabolic engineering of the mevalonate pathway in Saccharomyces cerevisiae

scientific article published in May 2010

Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering.

scientific article published on 18 July 2009

Enhancing the copy number of episomal plasmids in Saccharomyces cerevisiae for improved protein production

scientific article published on 25 April 2012

Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods

scientific article

Erratum to: A molecular genetic toolbox for Yarrowia lipolytica

scientific article published on 22 February 2017

Establishing a platform cell factory through engineering of yeast acetyl-CoA metabolism

scientific article published on 17 November 2012

Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine

scientific article published on 23 October 2014

Establishing very long-chain fatty alcohol and wax ester biosynthesis in Saccharomyces cerevisiae

scientific article published on 14 November 2016

Establishment of a yeast platform strain for production of p-coumaric acid through metabolic engineering of aromatic amino acid biosynthesis

scientific article

Evolution of the Metabolic Engineering Community

scientific article published on 01 July 2018

Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption

scientific article

Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments.

scientific article published on November 2016

Evolutionary programming as a platform for in silico metabolic engineering

scientific article

Exercise suppresses tumor growth through epinephrine- and IL-6-dependent mobilization and redistribution of NK cells.

scientific article published on 4 November 2015

Expanding the product portfolio of fungal type I fatty acid synthases

scientific article published on 20 February 2017

Exploiting off-targeting in guide-RNAs for CRISPR systems for simultaneous editing of multiple genes

scientific article published on 8 September 2017

Exploring the potential of Saccharomyces cerevisiae for biopharmaceutical protein production

scientific article

Expression of a cytoplasmic transhydrogenase in Saccharomyces cerevisiae results in formation of 2-oxoglutarate due to depletion of the NADPH pool

scientific article

Expression of cocoa genes in Saccharomyces cerevisiae improves cocoa butter production

scientific article published on 25 January 2018

Expression of the Escherichia coli pntA and pntB genes, encoding nicotinamide nucleotide transhydrogenase, in Saccharomyces cerevisiae and its effect on product formation during anaerobic glucose fermentation.

scientific article

Extending the G1 phase improves the production of lipophilic compounds in yeast by boosting enzyme expression and increasing cell size

scientific article published on 19 November 2024

Extensive weight loss reveals distinct gene expression changes in human subcutaneous and visceral adipose tissue

scientific article

FANTOM: Functional and taxonomic analysis of metagenomes

scientific article

FATTY ACID SYNTHESIS IS REQUIRED FOR BREAST CANCER BRAIN METASTASIS

scientific article published on 01 April 2021

FEMS yeast research: the yeast community journal

scientific article published in March 2015

FIA for on-line monitoring of important lactic acid fermentation variables

scientific article published in April 1989

Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae

scientific article published on 9 May 2012

Fatty Acid-Derived Biofuels and Chemicals Production in Saccharomyces cerevisiae

scientific article

Fermentation performance and intracellular metabolite patterns in laboratory and industrial xylose-fermenting Saccharomyces cerevisiae

scientific article published on 3 July 2002

Fifteen years of large scale metabolic modeling of yeast: developments and impacts

scientific article published on 06 August 2011

Finding directionality and gene-disease predictions in disease associations

scientific article published on 15 July 2015

Flux Control at the Malonyl-CoA Node through Hierarchical Dynamic Pathway Regulation in Saccharomyces cerevisiae

scientific article published on 10 January 2016

Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism

scientific article

Flux control through protein phosphorylation in yeast

scientific article published on 25 October 2016

Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae

scientific article published in January 1997

From flavors and pharmaceuticals to advanced biofuels: production of isoprenoids in Saccharomyces cerevisiae

scientific article

From genomes to in silico cells via metabolic networks

scientific article

From glucose to antibiotics: what controls the fluxes?

scientific article

From next-generation sequencing to systematic modeling of the gut microbiome

scientific article

Fuel ethanol production from lignocellulose: a challenge for metabolic engineering and process integration.

scientific article

Functional expression and characterization of five wax ester synthases in Saccharomyces cerevisiae and their utility for biodiesel production

scientific article (publication date: 24 February 2012)

Functional expression and evaluation of heterologous phosphoketolases in Saccharomyces cerevisiae

scientific article published on 15 November 2016

Functional pyruvate formate lyase pathway expressed with two different electron donors in Saccharomyces cerevisiae at aerobic growth

scientific article

Functional screening of aldehyde decarbonylases for long-chain alkane production by Saccharomyces cerevisiae

scientific article published on 2 May 2017

Fungal genomics beyond Saccharomyces cerevisiae?

scientific article

Fungal metabolite analysis in genomics and phenomics

scientific article

Galactose Expulsion during Lactose Metabolism in Lactococcus lactis subsp. cremoris FD1 Due to Dephosphorylation of Intracellular Galactose 6-Phosphate

scientific article

Gcn4p and the Crabtree effect of yeast: drawing the causal model of the Crabtree effect in Saccharomyces cerevisiae and explaining evolutionary trade-offs of adaptation to galactose through systems biology

article

Gene deletion of cytosolic ATP: citrate lyase leads to altered organic acid production in Aspergillus niger

scientific article

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

scientific article published on 7 February 2023

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

scientific article published on 26 April 2022

Genetic and nutrient modulation of acetyl-CoA levels in Synechocystis for n-butanol production

scientific article published on 16 October 2015

Genetically structured modeling of protein production in filamentous fungi

article

Genetically structured modeling of protein production in filamentous fungi

scientific article published on 01 January 1999

Genome scale metabolic modeling of cancer

scientific article published on 4 November 2016

Genome scale metabolic modeling of the riboflavin overproducer Ashbya gossypii

scientific article published on 27 December 2013

Genome scale models of yeast: towards standardized evaluation and consistent omic integration

scientific article published on August 2015

Genome-Wide Mapping of Binding Sites Reveals Multiple Biological Functions of the Transcription Factor Cst6p in Saccharomyces cerevisiae

scientific article

Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism

scientific article published on June 2005

Genome-scale analysis of the high-efficient protein secretion system of Aspergillus oryzae

scientific article

Genome-scale metabolic model of Pichia pastoris with native and humanized glycosylation of recombinant proteins

scientific article published on 19 October 2015

Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

scientific article published in January 2014

Genome-scale metabolic models applied to human health and disease

scientific article published on 23 June 2017

Genome-scale metabolic models of Saccharomyces cerevisiae

scientific article published on January 2011

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

scientific article

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

scientific article

Genome-scale metabolic representation of Amycolatopsis balhimycina

scientific article published on 6 February 2012

Genome-scale model of Rhodotorula toruloides metabolism

Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae

scientific article published on 18 July 2022

Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production

scientific article published on 23 April 2013

Genome-scale modeling of human metabolism - a systems biology approach

scientific article published on 24 April 2013

Genome-scale modeling of the protein secretory machinery in yeast

scientific article

Genome-scale modeling of yeast metabolism: retrospectives and perspectives

scientific article published on 22 February 2022

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

scientific article

Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion

Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion

scientific article published on 02 January 2020

Genome-wide analysis of maltose utilization and regulation in aspergilli

scientific article published on 20 August 2009

Genome-wide transcriptional response of a Saccharomyces cerevisiae strain with an altered redox metabolism

scientific article published on February 2004

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species

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Global metabolite analysis of yeast: evaluation of sample preparation methods

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Global rewiring of cellular metabolism renders Saccharomyces cerevisiae Crabtree negative

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Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3.

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Glucoamylase production in batch, chemostat and fed-batch cultivations by an industrial strain of Aspergillus niger

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Glucose control in Saccharomyces cerevisiae: the role of Mig1 in metabolic functions

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Glucose metabolism in the antibiotic producing actinomycete Nonomuraea sp. ATCC 39727.

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Glucose repression in Saccharomyces cerevisiae

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Glucose-Dependent Promoters for Dynamic Regulation of Metabolic Pathways.

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Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma

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GotEnzymes: an extensive database of enzyme parameter predictions

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Growth and product formation of Aspergillus oryzae during submerged cultivations: Verification of a morphologically structured model using fluorescent probes

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Growth and production kinetics of a teicoplanin producing strain of Actinoplanes teichomyceticus

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Growth energetics and metabolic fluxes in continuous cultures of Penicillium chrysogenum

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Growth physiology and dimorphism of Mucor circinelloides (syn. racemosus) during submerged batch cultivation

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Growth temperature exerts differential physiological and transcriptional responses in laboratory and wine strains of Saccharomyces cerevisiae

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Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

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Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae

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Guidelines and recommendations on yeast cell death nomenclature.

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Gut metagenome in European women with normal, impaired and diabetic glucose control

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Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling

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HCSD: the human cancer secretome database

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HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer

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Hap4 is not essential for activation of respiration at low specific growth rates in Saccharomyces cerevisiae.

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Harnessing Yeast Peroxisomes for Biosynthesis of Fatty-Acid-Derived Biofuels and Chemicals with Relieved Side-Pathway Competition

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Harnessing synthetic biology for mushroom farming

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Heat shock response improves heterologous protein secretion in Saccharomyces cerevisiae

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Heterologous transporter expression for improved fatty alcohol secretion in yeast

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High-Throughput Microfluidics for the Screening of Yeast Libraries

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High-throughput metabolic state analysis: the missing link in integrated functional genomics of yeasts.

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High-throughput screening for industrial enzyme production hosts by droplet microfluidics.

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Human gut microbiota and healthy aging: Recent developments and future prospective

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Human metabolic atlas: an online resource for human metabolism

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Identification of a novel gene required for competitive growth at high temperature in the thermotolerant yeast

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Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

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Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks

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Identification of the decumbenone biosynthetic gene cluster in and the importance for production of calbistrin

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Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling.

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Identifying molecular effects of diet through systems biology: influence of herring diet on sterol metabolism and protein turnover in mice

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Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress

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Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

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Impact of transamination reactions and protein turnover on labeling dynamics in (13)C-labeling experiments

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Implementation of communication-mediating domains for non-ribosomal peptide production in Saccharomyces cerevisiae

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Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae

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Improved polyhydroxybutyrate production by Saccharomyces cerevisiae through the use of the phosphoketolase pathway

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Improved production of a heterologous amylase in Saccharomyces cerevisiae by inverse metabolic engineering

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Improved production of fatty acid ethyl esters in Saccharomyces cerevisiae through up-regulation of the ethanol degradation pathway and expression of the heterologous phosphoketolase pathway

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Improved production of fatty acids by Saccharomyces cerevisiae through screening a cDNA library from the oleaginous yeast Yarrowia lipolytica

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Improved quantification of farnesene during microbial production from Saccharomyces cerevisiae in two-liquid-phase fermentations

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Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: example of transcript analysis as a tool in inverse metabolic engineering

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Improving heterologous protein secretion at aerobic conditions by activating hypoxia-induced genes in Saccharomyces cerevisiae

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Improving production of malonyl coenzyme A-derived metabolites by abolishing Snf1-dependent regulation of Acc1

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Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

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Improving the economics of NASH/NAFLD treatment through the use of systems biology

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Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints ⬇️

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In search for symmetries in the metabolism of cancer

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In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production

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In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network

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In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis.

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In vitro turnover numbers do not reflect in vivo activities of yeast enzymes

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In vivo analysis of the viable microbiota and Helicobacter pylori transcriptome in gastric infection and early stages of carcinogenesis

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In vivo dynamics of galactose metabolism in Saccharomyces cerevisiae: metabolic fluxes and metabolite levels.

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Increased CO2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast

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Increased glycopeptide production after overexpression of shikimate pathway genes being part of the balhimycin biosynthetic gene cluster

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Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae

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Increasing cocoa butter-like lipid production of Saccharomyces cerevisiae by expression of selected cocoa genes

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Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network

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Induction and repression of alpha-amylase production in batch and continuous cultures of Aspergillus oryzae

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Industrial glucoamylase fed-batch benefits from oxygen limitation and high osmolarity

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Industrial systems biology

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Industrial systems biology and its impact on synthetic biology of yeast cell factories

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Industrial systems biology of Saccharomyces cerevisiae enables novel succinic acid cell factory

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Influence of the Dissolved Oxygen Concentration on the Penicillin Biosynthetic Pathway in Steady-State Cultures of Penicillium chrysogenum

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Influence of the adipate and dissolved oxygen concentrations on the beta-lactam production during continuous cultivations of a Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus

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Innovation trends in industrial biotechnology

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Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli

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Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance

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Integrated analysis of the global transcriptional response to α-amylase over-production by Aspergillus oryzae

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Integrated analysis of the yeast NADPH-regulator Stb5 reveals distinct differences in NADPH requirements and regulation in different states of yeast metabolism

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Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast

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Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast

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Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC

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Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

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Integration of clinical data with a genome-scale metabolic model of the human adipocyte

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Integration of gene expression data into genome-scale metabolic models

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Integrative analysis of human omics data using biomolecular networks

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Integrative analysis using proteome and transcriptome data from yeast to unravel regulatory patterns at post-transcriptional level

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Integrative functional analysis uncovers metabolic differences between Candida species

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Intracellular metabolite profiling of Fusarium oxysporum converting glucose to ethanol

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Investigation of malic acid production in Aspergillus oryzae under nitrogen starvation conditions

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Investigation of putative regulatory acetylation sites in Fas2p of Saccharomyces cerevisiae

Investigation of the impact of MIG1 and MIG2 on the physiology of Saccharomyces cerevisiae

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Isotopomer analysis using GC-MS.

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It is all about metabolic fluxes

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Kinetic models in industrial biotechnology - Improving cell factory performance

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Kinetic studies of acid-inactivation of α-amylase from Aspergillus oryzae

Kinetic studies on the carboxylation of 6-amino-penicillanic acid to 8-hydroxy-penillic acid

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Kinetics of alpha-amylase secretion in Aspergillus oryzae

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Kinetics of α-amylase secretion in Aspergillus oryzae

Kiwi: a tool for integration and visualization of network topology and gene-set analysis

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Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

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Learning deep representations of enzyme thermal adaptation

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Learning deep representations of enzyme thermal adaptation

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Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

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Linking genotype and phenotype of Saccharomyces cerevisiae strains reveals metabolic engineering targets and leads to triterpene hyper-producers.

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Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p

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Lipase production by recombinant strains of Aspergillus niger expressing a lipase-encoding gene from Thermomyces lanuginosus

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Lipid biosynthesis monitored at the single-cell level in Saccharomyces cerevisiae

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Lipid engineering combined with systematic metabolic engineering of Saccharomyces cerevisiae for high-yield production of lycopene

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Logical transformation of genome-scale metabolic models for gene level applications and analysis.

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Long-chain alkane production by the yeast Saccharomyces cerevisiae

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MEMOTE for standardized genome-scale metabolic model testing

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Machine learning-based investigation of the cancer protein secretory pathway

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Machine learning-based investigation of the cancer protein secretory pathway

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Maintaining a strong yeast research community

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Management of the endoplasmic reticulum stress by activation of the heat shock response in yeast

scientific article published on 12 December 2013

Manipulation of malic enzyme in Saccharomyces cerevisiae for increasing NADPH production capacity aerobically in different cellular compartments.

scientific article published in October 2004

Mapping condition-dependent regulation of lipid metabolism in Saccharomyces cerevisiae

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Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

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Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling

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Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae

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Mapping the polysaccharide degradation potential of Aspergillus niger

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Mass spectrometry in metabolome analysis.

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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

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Mathematical models of cell factories: moving towards the core of industrial biotechnology

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Measurement of ?-amylase activity by Sequential Injection Analysis

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma

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Metabolic Models of Protein Allocation Call for the Kinetome

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Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis

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Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma

Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase

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Metabolic characterization of high- and low-yielding strains of Penicillium chrysogenum

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Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth

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Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth

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Metabolic control analysis of biochemical pathways based on a thermokinetic description of reaction rates

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Metabolic control analysis of the penicillin biosynthetic pathway in a high-yielding strain of Penicillium chrysogenum

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Metabolic control analysis of the penicillin biosynthetic pathway: the influence of the LLD-ACV:bisACV ratio on the flux control

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Metabolic control analysis of xylose catabolism in Aspergillus

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Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community

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Metabolic engineering

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Metabolic engineering and transcriptomic analysis of Saccharomyces cerevisiae producing p-coumaric acid from xylose

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Metabolic engineering frontiers emerging with advanced tools and methodologies

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Metabolic engineering of Saccharomyces cerevisiae

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Metabolic engineering of Saccharomyces cerevisiae for overproduction of triacylglycerols.

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Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived hydrocarbons

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Metabolic engineering of Saccharomyces cerevisiae for production of germacrene A, a precursor of beta-elemene

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Metabolic engineering of Saccharomyces cerevisiae for production of very long chain fatty acid-derived chemicals

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Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries

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Metabolic engineering of ammonium assimilation in xylose-fermenting Saccharomyces cerevisiae improves ethanol production.

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Metabolic engineering of beta-lactam production

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Metabolic engineering of recombinant protein secretion by Saccharomyces cerevisiae

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Metabolic engineering of the morphology of Aspergillus oryzae by altering chitin synthesis

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Metabolic engineering of the morphology of Aspergillus.

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Metabolic engineering of yeast for fermentative production of flavonoids

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Metabolic engineering of yeast for production of fuels and chemicals

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Metabolic engineering strategies for microbial synthesis of oleochemicals

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Metabolic engineering, synthetic biology and systems biology

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Metabolic engineering: techniques for analysis of targets for genetic manipulations

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Metabolic flux distributions in Penicillium chrysogenum during fed-batch cultivations

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Metabolic footprinting in microbiology: methods and applications in functional genomics and biotechnology

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Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger

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Metabolic network analysis of Bacillus clausii on minimal and semirich medium using (13)C-labeled glucose

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Metabolic network analysis of Penicillium chrysogenum using (13)C-labeled glucose

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Metabolic network analysis of Streptomyces tenebrarius, a Streptomyces species with an active entner-doudoroff pathway

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Metabolic network analysis of an adipoyl-7-ADCA-producing strain of Penicillium chrysogenum: elucidation of adipate degradation

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Metabolic network analysis of penicillium chrysogenum using 13c‐labeled glucose

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Metabolic network analysis on Phaffia rhodozyma yeast using 13C-labeled glucose and gas chromatography-mass spectrometry

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Metabolic network analysis. A powerful tool in metabolic engineering.

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Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans

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Metabolic network remodelling enhances yeast’s fitness on xylose using aerobic glycolysis

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Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes

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Metabolic pathway engineering for fatty acid ethyl ester production in Saccharomyces cerevisiae using stable chromosomal integration

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Metabolism: Built on stable catalysts

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Metabolite Depletion Affects Flux Profiling of Cell Lines

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Metabolite profiling of fungi and yeast: from phenotype to metabolome by MS and informatics

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Metagenomic analysis of bile salt biotransformation in the human gut microbiome

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Metagenomic analysis of bile salt biotransformation in the human gut microbiome

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Metagenomic analysis of bile salt biotransformation in the human gut microbiome

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Metagenomic analysis of bile salt biotransformation in the human gut microbiome

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Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome

Metagenomic data utilization and analysis (MEDUSA) and construction of a global gut microbial gene catalogue

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Metastatic triple negative breast cancer adapts its metabolism to destination tissues while retaining key metabolic signatures

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Microbial acetyl-CoA metabolism and metabolic engineering

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Microbial isoprenoid production: an example of green chemistry through metabolic engineering

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Microbiome and metabolome features of the cardiometabolic disease spectrum

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Microfluidic screening and whole-genome sequencing identifies mutations associated with improved protein secretion by yeast

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Minimum Information about a Biosynthetic Gene cluster.

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Model-Driven Elucidation of Lactose and Galactose Metabolism via Oxidoreductive Pathway in Sungouiella intermedia for Cell Factory Applications

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Modeling Lactococcus lactis using a genome-scale flux model

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Modeling fermentations with recombinant microorganisms: Formulation of a structured model

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Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices

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Modeling the growth and proteinase A production in continuous cultures of recombinant Saccharomyces cerevisiae

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Modelling approaches for studying the microbiome

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Modelling of the protonophoric uncoupling by phenoxyacetic acid of the plasma membrane potential of Penicillium chrysogenum

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Modelling of the protonophoric uncoupling by phenoxyacetic acid of the plasma membrane potential of Penicillium chrysogenum

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Modelling the growth of filamentous fungi

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Moderate Expression of SEC16 Increases Protein Secretion by Saccharomyces cerevisiae

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Modifying Yeast Tolerance to Inhibitory Conditions of Ethanol Production Processes

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Modular Pathway Rewiring of Yeast for Amino Acid Production

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Modular pathway rewiring of Saccharomyces cerevisiae enables high-level production of L-ornithine

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Modulation of saturation and chain length of fatty acids in Saccharomyces cerevisiae for production of cocoa butter-like lipids

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Molecular and process design for rotavirus-like particle production in Saccharomyces cerevisiae

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Molecular basis for mycophenolic acid biosynthesis in Penicillium brevicompactum ⬇️

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Molecular mechanism of flocculation self-recognition in yeast and its role in mating and survival

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Morphological characterization of Aspergillus nidulans: growth, septation and fragmentation

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Morphology and physiology of an α-amylase producing strain of Aspergillus oryzae during batch cultivations

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Morphology and physiology of the dimorphic fungus Mucor circinelloides (syn. M. racemosus) during anaerobic growth.

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Morphology of Trichoderma reesei QM 9414 in submerged cultures

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Multi-omics analyses of the transition to the Crabtree effect in S. cerevisiae reveals a key role for the citric acid shuttle

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Multidimensional engineering of Saccharomyces cerevisiae for efficient synthesis of medium-chain fatty acids ⬇️

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Multiplexed CRISPR/Cas9 Genome Editing and Gene Regulation Using Csy4 in Saccharomyces cerevisiae.

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Multiscale models quantifying yeast physiology: towards a whole-cell model

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NADPH-dependent glutamate dehydrogenase in Penicillium chrysogenum is involved in regulation of beta-lactam production

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Natural computation meta-heuristics for the in silico optimization of microbial strains

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Network analyses identify liver-specific targets for treating liver diseases

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Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression

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Networking in metabolism and human disease

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New Challenges to Study Heterogeneity in Cancer Redox Metabolism

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New paradigms for metabolic modeling of human cells

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Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast

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Novel insights into obesity and diabetes through genome-scale metabolic modeling

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Nutritional systems biology: definitions and approaches

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On-line study of fungal morphology during submerged growth in a small flow-through cell

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On-line study of growth kinetics of single hyphae of Aspergillus oryzae in a flow-through cell

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One-year supplementation with Lactobacillus reuteri ATCC PTA 6475 counteracts a degradation of gut microbiota in older women with low bone mineral density

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On‐line study of fungal morphology during submerged growth in a small flow‐through cell

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On‐line study of growth kinetics of single hyphae of Aspergillus oryzae in a flow‐through cell

Opportunities for yeast metabolic engineering: Lessons from synthetic biology

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OptFlux: an open-source software platform for in silico metabolic engineering

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Optimization of ethanol production in Saccharomyces cerevisiae by metabolic engineering of the ammonium assimilation

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Optimization of heterologous production of the polyketide 6-MSA in Saccharomyces cerevisiae

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Overexpression of isocitrate lyase-glyoxylate bypass influence on metabolism in Aspergillus niger

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Pan-cancer analysis of the metabolic reaction network

Pathway engineering in yeast for synthesizing the complex polyketide bikaverin

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Pathway kinetics and metabolic control analysis of a high-yielding strain of Penicillium chrysogenum during fed batch cultivations

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Pathway kinetics and metabolic control analysis of a high-yielding strain of Penicillium chrysogenum during fed batch cultivations

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Pellet formation and fragmentation in submerged cultures of Penicillium chrysogenum and its relation to penicillin production

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Penicillium arizonense, a new, genome sequenced fungal species, reveals a high chemical diversity in secreted metabolites

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Personal model-assisted identification of NAD+ and glutathione metabolism as intervention target in NAFLD.

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Pharmaceutical protein production by yeast: towards production of human blood proteins by microbial fermentation

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Phenotypic characterization of glucose repression mutants of Saccharomyces cerevisiae using experiments with 13C-labelled glucose

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Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: physiological investigation and transcriptome analysis

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Physiological and transcriptional characterization of Saccharomyces cerevisiae engineered for production of fatty acid ethyl esters

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Physiological characterisation of Penicillium chrysogenum strains expressing the expandase gene from Streptomyces clavuligerus during batch cultivations. Growth and adipoyl-7-aminodeacetoxycephalosporanic acid production

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Physiological characterisation of acuB deletion in Aspergillus niger.

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Physiological characterisation of recombinant Aspergillus nidulans strains with different creA genotypes expressing A. oryzae alpha-amylase

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Physiological characterization of glucose repression in the strains with SNF1 and SNF4 genes deleted

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Physiological characterization of recombinant Saccharomyces cerevisiae expressing the Aspergillus nidulans phosphoketolase pathway: validation of activity through 13C-based metabolic flux analysis

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Physiological characterization of secondary metabolite producing Penicillium cell factories

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Physiological characterization of the high malic acid-producing Aspergillus oryzae strain 2103a-68.

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Physiological characterization of xylose metabolism in Aspergillus niger under oxygen-limited conditions

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Physiological effects of nitrogen starvation in an anaerobic batch culture of Saccharomyces cerevisiae

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Physiological studies in aerobic batch cultivations of Saccharomyces cerevisiae strains harboring the MEL1 gene

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Physiology of Aspergillus niger in oxygen-limited continuous cultures: Influence of aeration, carbon source concentration and dilution rate

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Plasma and Urine Free Glycosaminoglycans as Monitoring and Predictive Biomarkers in Metastatic Renal Cell Carcinoma: A Prospective Cohort Study

scientific article published in February 2023

Plasma glycosaminoglycans and cell-free DNA to discriminate benign and malignant lung diseases

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Polyol synthesis in Aspergillus niger: influence of oxygen availability, carbon and nitrogen sources on the metabolism

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Population balance models of autonomous microbial oscillations

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Predicting growth of the healthy infant using a genome scale metabolic model

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Principles of optimal metabolic network operation

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Production of a heterologous proteinase A by Saccharomyces kluyveri

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Production of biopharmaceutical proteins by yeast: advances through metabolic engineering

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Production of extracellular protease and glucose uptake in Bacillus clausii in steady-state and transient continuous cultures

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Production of farnesene and santalene by Saccharomyces cerevisiae using fed-batch cultivations with RQ-controlled feed

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Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories

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Production of natural products through metabolic engineering of Saccharomyces cerevisiae

scientific article published on 24 December 2014

Production of plant sesquiterpenes in Saccharomyces cerevisiae: effect of ERG9 repression on sesquiterpene biosynthesis

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Production of savinase and population viability of Bacillus clausii during high-cell-density fed-batch cultivations

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Production of teicoplanin by Actinoplanes teichomyceticus in continuous fermentation

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Production of the glycopeptide antibiotic A40926 by Nonomuraea sp. ATCC 39727: influence of medium composition in batch fermentation

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Production of the polyketide 6-MSA in yeast engineered for increased malonyl-CoA supply

scientific article published on 10 May 2008

Production of β-ionone by combined expression of carotenogenic and plant CCD1 genes in Saccharomyces cerevisiae

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Production of β‐carotene in Saccharomyces cerevisiae through altering yeast lipid metabolism

Production of β‐carotene in Saccharomyces cerevisiae through altering yeast lipid metabolism

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Professor John Villadsen, PhD, Dr. techn., Dr. h. c. mult (12.6.1936–22.7.2021)

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Professor Stefan Hohmann (08.09.1956–02.07.2021)

scientific article published in 2022

Profiling of cytosolic and peroxisomal acetyl-CoA metabolism in Saccharomyces cerevisiae

scientific article

Prognostic Value of Plasma and Urine Glycosaminoglycan Scores in Clear Cell Renal Cell Carcinoma

scientific article

Prospects for microbial biodiesel production

scientific article published on 16 February 2011

Prospects for systems biology and modeling of the gut microbiome

scientific article published on 09 March 2011

Prospects of yeast systems biology for human health: integrating lipid, protein and energy metabolism

scientific article published on 26 October 2010

Protein kinase A is involved in the control of morphology and branching during aerobic growth of Mucor circinelloides

scientific article

Proteome allocations change linearly with specific growth rate of Saccharomyces cerevisiae under glucose-limitation

scientific article published on 18 May 2021

Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation

scientific article published on 20 May 2022

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

scientific article published on 01 April 2021

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

scientific article published on 16 October 2020

Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media

scientific article published on 17 August 2020

Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes

scientific article published on 16 February 2016

Proteome- and transcriptome-driven reconstruction of the human myocyte metabolic network and its use for identification of markers for diabetes

scientific article published on 30 April 2015

Proteomics. Tissue-based map of the human proteome

scientific article (publication date: 23 January 2015)

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 April 2020

Purification and characterization of δ-(l-α-aminoadipyl)-l-cysteinyl-d-valine synthetase from Penicillium chrysogenum ⬇️

scientific article published on October 1, 1997

Pyruvate decarboxylases from the petite-negative yeast Saccharomyces kluyveri

scientific article

Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function

scientific article published on 04 January 2019

Quantification of Intracellular Metabolic Fluxes from Fractional Enrichment and13C–13C Coupling Constraints on the Isotopomer Distribution in Labeled Biomass Components

scientific article published on 01 April 1999

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.

scientific article

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast

scientific article published on 15 March 2021

Quantitative analysis of Penicillium chrysogenum Wis54-1255 transformants overexpressing the penicillin biosynthetic genes

scientific article

Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis

scientific article published on 27 April 2020

Quantitative analysis of glycerol accumulation, glycolysis and growth under hyper osmotic stress

scientific article

Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models

scientific article published in May 1999

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

scholarly article by Hao Wang published in October 2018

RAVEN 2.0: a versatile toolbox for metabolic network reconstruction and a case study onStreptomyces coelicolor

RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low pH

scientific article published on 16 September 2015

Rapid quantification of yeast lipid using microwave-assisted total lipid extraction and HPLC-CAD.

scientific article published on 13 May 2013

Rational gRNA design based on transcription factor binding data

scientific article published in 2021

Recent trends in metabolic engineering of microbial chemical factories

scientific article published on 09 June 2019

Reciprocal 13C-labeling: a method for investigating the catabolism of cosubstrates

scientific article

Recombinant bacterial hemoglobin alters metabolism of Aspergillus niger

scientific article

Recon3D enables a three-dimensional view of gene variation in human metabolism.

scientific article published on 19 February 2018

Reconfiguration of the reductive TCA cycle enables high-level succinic acid production by Yarrowia lipolytica

scientific article published on 20 December 2023

Reconstruction and Analysis of a Kluyveromyces marxianus Genome-scale Metabolic Model

Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

scientific article published on 06 November 2019

Reconstruction and evaluation of the synthetic bacterial MEP pathway in Saccharomyces cerevisiae

scientific article

Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae

scientific article published on 14 January 2009

Reconstruction of 24 Penicillium genome-scale metabolic models shows diversity based on their secondary metabolism

scientific article published on 25 July 2018

Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion

scientific article published on 31 July 2018

Reconstruction of a bacterial isoprenoid biosynthetic pathway in Saccharomyces cerevisiae

scientific article

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

scientific article published in 2022

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

scientific article published in April 2021

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

scientific article published on 5 March 2021

Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

scientific article

Reconstruction of the central carbon metabolism of Aspergillus niger

scientific article published on November 2003

Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator

scientific article

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation

scientific article

Recovery of phenotypes obtained by adaptive evolution through inverse metabolic engineering

scientific article published on 17 August 2012

Redirection of lipid flux toward phospholipids in yeast increases fatty acid turnover and secretion

scientific article

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

scientific article published in 2018

Regulation of amino-acid metabolism controls flux to lipid accumulation in Yarrowia lipolytica

scientific article

Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.

scientific article published on 16 July 2002

Reprogramming Yeast Metabolism from Alcoholic Fermentation to Lipogenesis

scientific article published on 09 August 2018

Respiratory metabolism and calorie restriction relieve persistent endoplasmic reticulum stress induced by calcium shortage in yeast

scientific article published on 16 June 2016

Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using "-omics" techniques ⬇️

scientific article published on 23 April 2011

Rewiring carbon flux in Escherichia coli using a bifunctional molecular switch

scientific article published on 13 May 2020

Rewiring carbon metabolism in yeast for high level production of aromatic chemicals

scientific article published on 31 October 2019

Rewiring regulation on respiro-fermentative metabolism relieved Crabtree effects in Saccharomyces cerevisiae

scientific article published in 2022

Rheological characterization of media containing Penicillium chrysogenum

scientific article published on 01 January 1993

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm

scientific article published on 27 October 2005

Role of substrate concentration in mitosis and hyphal extension of Aspergillus

scientific article

Roux-en-Y Gastric Bypass and Vertical Banded Gastroplasty Induce Long-Term Changes on the Human Gut Microbiome Contributing to Fat Mass Regulation.

scientific article

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions

Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network

scientific article published on 24 October 2003

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

scientific article

Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae

scientific article

Screening of 2a peptides for Polycistronic Gene Expression in Yeast

scientific article published on 30 March 2018

Selection of complementary foods based on optimal nutritional values

scientific article

Semi-on-line analysis for fast and precise monitoring of bioreaction processes

scientific article published on October 1996

Silencing MIG1 in Saccharomyces cerevisiae: effects of antisense MIG1 expression and MIG1 gene disruption.

scientific article

Simple and robust method for estimation of the split between the oxidative pentose phosphate pathway and the Embden-Meyerhof-Parnas pathway in microorganisms

scientific article published in September 2001

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

article by Petia Kovatcheva-Datchary et al published 26 March 2019 in Cell Reports

Simulation of penicillin production in fed-batch cultivations using a morphologically structured model

scientific article published in December 1997

Simultaneous analysis of amino and nonamino organic acids as methyl chloroformate derivatives using gas chromatography-mass spectrometry

scientific article

Simultaneous overexpression of enzymes of the lower part of glycolysis can enhance the fermentative capacity of Saccharomyces cerevisiae

scientific article

Six Tissue Transcriptomics Reveals Specific Immune Suppression in Spleen by Dietary Polyunsaturated Fatty Acids

scientific article

Specific growth rate and substrate dependent polyhydroxybutyrate production in Saccharomyces cerevisiae

scientific article

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis

scientific article published on 06 May 2020

Steady-state and transient-state analyses of aerobic fermentation in Saccharomyces kluyveri.

scientific article published in May 2002

Strategies and challenges for metabolic rewiring

Stratification of Hepatocellular Carcinoma Patients Based on Acetate Utilization

scientific article published on 19 November 2015

Stress-Induced Expression is Enriched for Evolutionarily Young Genes in Diverse Budding Yeasts

scientific article published on 5 June 2019

Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts

scientific article published on 01 May 2020

Structural and transcriptional analysis of the pyrABCN, pyrD and pyrF genes in Aspergillus nidulans and the evolutionary origin of fungal dihydroorotases

scientific article published in 1999

Structured modeling of a microbial system: I. A theoretical study of lactic acid fermentation

scientific article published on 01 June 1991

Structured modeling of a microbial system: II. Experimental verification of a structured lactic acid fermentation model

scientific article published on 01 June 1991

Structured modeling of a microbial system: III. Growth on mixed substrates

scientific article published on 01 June 1991

Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools

scientific article published on 23 January 2009

Study of the glucoamylase promoter in Aspergillus niger using green fluorescent protein

scientific article published on 01 March 1999

Succinate dehydrogenase inhibition leads to epithelial-mesenchymal transition and reprogrammed carbon metabolism

scientific article

Supervised generative design of regulatory DNA for gene expression control

Surface Hydrophobicity of Aspergillus nidulans Conidiospores and Its Role in Pellet Formation

article by J. Dynesen et al published 6 June 2003 in Biotechnology Progress

Symptomatic atherosclerosis is associated with an altered gut metagenome

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Synergies between synthetic biology and metabolic engineering ⬇️

scientific article published on 05 August 2011

Synthetic Biology of Yeast

scientific article published on 23 January 2019

Synthetic biology for engineering acetyl coenzyme A metabolism in yeast

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Systematic Analysis Reveals that Cancer Mutations Converge on Deregulated Metabolism of Arachidonate and Xenobiotics

scientific article published on 5 July 2016

Systematic analysis of overall survival and interactions between tumor mutations and drug treatment

scientific article published on 2 March 2016

Systematic inference of functional phosphorylation events in yeast metabolism

scientific article published on 2 March 2017

Systemic analysis of the response of Aspergillus niger to ambient pH.

scientific article published on May 2009

Systems Biology of Metabolism

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Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans

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Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism

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Systems biology in hepatology: approaches and applications

scientific article published on 23 April 2018

Systems biology of antibiotic production by microorganisms

scientific article published on 30 May 2007

Systems biology of energy homeostasis in yeast

scientific article published on May 2010

Systems biology of industrial microorganisms

scientific article published in January 2010

Systems biology of lipid metabolism: from yeast to human

scientific article published on December 2009

Systems biology of yeast: enabling technology for development of cell factories for production of advanced biofuels

scientific article published on 12 December 2011

Systems medicine and metabolic modelling

scientific article published on February 2012

TCSBN: a database of tissue and cancer specific biological networks

scientific article published on 24 October 2017

TRYing to evaluate production costs in microbial biotechnology

scientific article published in May 2024

Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors.

scientific article published on 5 March 2018

Teaching microbial physiology using glucose repression phenomenon in baker's yeast as an example

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The BioInnovation Institute as a catalyst for European life science startup creation

scientific article published in August 2022

The Impact of Systems Biology on Bioprocessing

scientific article published on 4 October 2017

The Influence of Microgravity on Invasive Growth in Saccharomyces cerevisiae

scientific article published on 01 January 2011

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

scientific article

The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alc33oholic fatty liver disease

scientific article published on 01 April 2020

The beta-subunits of the Snf1 kinase in Saccharomyces cerevisiae, Gal83 and Sip2, but not Sip1, are redundant in glucose derepression and regulation of sterol biosynthesis

scientific article published on 10 June 2010

The effect of CreA in glucose and xylose catabolism in Aspergillus nidulans

scientific article published on 15 August 2003

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

scientific article

The gut microbiota modulates host amino acid and glutathione metabolism in mice

scientific article published on 16 October 2015

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

scientific article published on 25 June 2015

The human liver-specific proteome defined by transcriptomics and antibody-based profiling

scientific article

The human secretome

scientific article published on 26 November 2019

The impact of GAL6, GAL80, and MIG1 on glucose control of the GAL system in Saccharomyces cerevisiae

scientific article published in April 2001

The impact of respiration and oxidative stress response on recombinant α-amylase production by Saccharomyces cerevisiae

scientific article published on 27 June 2016

The influence of carbon sources and morphology on nystatin production by Streptomyces noursei

scientific article published in May 2002

The influence of nitrogen sources on the α-amylase productivity of Aspergillus oryzae in continuous cultures

article

The integration of bio-catalysis and electrocatalysis to produce fuels and chemicals from carbon dioxide

scientific article published in 2022

The metabolic response of heterotrophic Arabidopsis cells to oxidative stress

scientific article published in 2007

The next wave in metabolome analysis

scientific article

The role of metabolic engineering in the improvement of Saccharomyces cerevisiae: utilization of industrial media

scientific article published on 01 June 2000

The role of metabolic engineering in the production of secondary metabolites

scientific article

The roles of galactitol, galactose-1-phosphate, and phosphoglucomutase in galactose-induced toxicity in Saccharomyces cerevisiae

scientific article

The simultaneous biosynthesis and uptake of amino acids by Lactococcus lactis studied by (13)C-labeling experiments

scientific article published in April 2002

The transcription factor Leu3 shows differential binding behavior in response to changing leucine availability

scientific article published on 26 June 2020

The yeast osmostress response is carbon source dependent

scientific article published on 20 April 2017

Thermotolerant Yeast Strains Adapted by Laboratory Evolution Show Trade-Off at Ancestral Temperatures and Preadaptation to Other Stresses

scientific article

Thermotolerant yeasts selected by adaptive evolution express heat stress response at 30 °C.

scientific article published on 27 May 2016

Third-generation biorefineries as the means to produce fuels and chemicals from CO2

scientific article published on 18 March 2020

Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response

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Toward design-based engineering of industrial microbes

scientific article published on 11 March 2010

Toward systems metabolic engineering of Aspergillus and Pichia species for the production of chemicals and biofuels ⬇️

scientific article published on April 11, 2013

Transcription analysis using high-density micro-arrays of Aspergillus nidulans wild-type and creA mutant during growth on glucose or ethanol

scientific article published in 2006

Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: a three factor design

scientific article

Transcriptional control of metabolic fluxes ⬇️

scientific article published on March 29, 2011

Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp1p and Stp2p

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Transcriptional reprogramming in yeast using dCas9 and combinatorial gRNA strategies

scientific article published on 15 March 2017

Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells

scientific article published on 5 June 2003

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

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Transcriptomic response of Saccharomyces cerevisiae to octanoic acid production

scientific article published on 18 February 2021

Transcriptomics resources of human tissues and organs

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Transient marker system for iterative gene targeting of a prototrophic fungus

scientific article published on 5 October 2007

Translational and systems medicine

scientific article published on 01 February 2012

Transport of sugars via two anomer-specific sites on mannose-phosphotransferase system in Lactococcus cremoris: in vivo study of mechanism, kinetics, and adaptation

scientific article published in August 1993

Trehalose-6-phosphate synthase and stabilization of yeast glycolysis

scientific article published on 11 November 2015

Two Uptake Systems for Fructose in Lactococcus lactis subsp. cremoris FD1 Produce Glycolytic and Gluconeogenic Fructose Phosphates and Induce Oscillations in Growth and Lactic Acid Formation

scientific article published on October 1993

Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes

scientific article

Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis

scientific article

Uncovering transcriptional regulation of metabolism by using metabolic network topology

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Understanding signaling in yeast: Insights from network analysis.

scientific article published on August 2007

Understanding the interactions between bacteria in the human gut through metabolic modeling

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Unraveling molecular signatures of immunostimulatory adjuvants in the female genital tract through systems biology

scientific article published on 7 June 2011

Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis

scientific article

Use of genome-scale metabolic models for understanding microbial physiology

scientific article published on 24 April 2010

Use of genome-scale microbial models for metabolic engineering

scientific article published on February 2004

Use of laminar flow patterning for miniaturised biochemical assays.

scientific article published on 11 November 2004

Using transcriptomics to improve butanol tolerance of Synechocystis sp. strain PCC 6803.

scientific article published on 20 September 2013

Versatile enzyme expression and characterization system for Aspergillus nidulans, with the Penicillium brevicompactum polyketide synthase gene from the mycophenolic acid gene cluster as a test case

scientific article published on 11 March 2011

Voluntary Running Suppresses Tumor Growth through Epinephrine- and IL-6-Dependent NK Cell Mobilization and Redistribution

scientific article published on 15 February 2016

Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications

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Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies

scientific article published on 10 February 2022

Yeast Systems Biology

scientific article published in 2008

Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming

scientific article published on 17 June 2024

Yeast biological networks unfold the interplay of antioxidants, genome and phenotype, and reveal a novel regulator of the oxidative stress response

scientific article

Yeast has evolved to minimize protein resource cost for synthesizing amino acids

scientific article published on 25 January 2022

Yeast increases glycolytic flux to support higher growth rates accompanied by decreased metabolite regulation and lower protein phosphorylation

scientific article published on 20 June 2023

Yeast mitochondria: an overview of mitochondrial biology and the potential of mitochondrial systems biology

scientific article published on 01 August 2018

Yeast optimizes metal utilization based on metabolic network and enzyme kinetics

scientific article published on 23 March 2021

Yeast systems biology

scientific article published on 01 February 2008

Yeast systems biology to unravel the network of life

scientific article

α-Amylase production in high cell density submerged cultivation of Aspergillus oryzae and A. nidulans

scientific article published in 2001

α-Amylase production in recombinant Aspergillus oryzae during fed-batch and continuous cultivations

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