List of works - Wojciech Rypniewski

A computationally designed β-amino acid-containing miniprotein

scientific article published in 2021

A new proposal for urease mechanism based on the crystal structures of the native and inhibited enzyme from Bacillus pasteurii: why urea hydrolysis costs two nickels

scientific article

Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).

scientific article published on 25 March 2016

Asp49 phospholipase A(2)-elaidoylamide complex: a new mode of inhibition

scientific article

Atomic resolution structure of CAG RNA repeats: structural insights and implications for the trinucleotide repeat expansion diseases

scientific article

Binding of the plant hormone kinetin in the active site of Mistletoe Lectin I from Viscum album

scientific article

Comparative crystallization and preliminary X-ray diffraction studies of locked nucleic acid and RNA stems of a tenascin C-binding aptamer

scientific article

Corrigendum to “X-ray, NMR and molecular dynamics studies on reduced bovine superoxide dismutase: Implications for the mechanism” [Biochem. Biophys. Res. Commun. 202 (1994) 1088–1095]

article

Crystal Structure of Mouse Thymidylate Synthase in Tertiary Complex with dUMP and Raltitrexed Reveals N-Terminus Architecture and Two Different Active Site Conformations

scientific article

Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA

scientific article

Crystal structure of oxidized Bacillus pasteurii cytochrome c553 at 0.97-A resolution

scientific article

Crystal structure of phosphoramide-phosphorylated thymidylate synthase reveals pSer127, reflecting probably pHis to pSer phosphotransfer

scientific article

Crystal structure of reduced bovine erythrocyte superoxide dismutase at 1.9 A resolution

scientific article

Crystal structure of unliganded phosphofructokinase from Escherichia coli

scientific article

Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome

scientific article

Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties

scientific article published on 08 February 2019

Crystal structures of nematode (parasitic T. spiralis and free living C. elegans), compared to mammalian, thymidylate synthases (TS). Molecular docking and molecular dynamics simulations in search for nematode-specific inhibitors of TS.

scientific article published on 12 August 2017

Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution

scientific article

Crystallisation under microgravity of mistletoe lectin I from Viscum album with adenine monophosphate and the crystal structure at 1.9 A resolution

scientific article

Crystallization and preliminary X-ray analysis of the 12S form of phosphofructokinase from Saccharomyces cerevisiae

scientific article published on 01 January 1998

Crystallization and preliminary X-ray analysis of the isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

scientific article

Crystallization and preliminary X-ray diffraction analysis of cytochrome c' from Rubrivivax gelatinosus at 1.3 A resolution

scientific article published on 01 March 1998

Crystallization and preliminary X-ray diffraction studies of a toxic phospholipase A2 from the venom of Vipera ammodytes meridionalis complexed to a synthetic inhibitor

scientific article published in August 2003

Crystallization and preliminary high-resolution X-ray diffraction analysis of native and beta-mercaptoethanol-inhibited urease from Bacillus pasteurii

scientific article published on 01 May 1998

Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120

scientific article

Crystallographic analysis of a thermoactive nitrilase

scientific article

Crystallographic and X-ray absorption spectroscopic characterization of Helicobacter pylori UreE bound to Ni 2+ and Zn 2+ reveals a role for the disordered C-terminal arm in metal trafficking

scientific article

Crystallographic characterization of CCG repeats

scientific article

Crystallographic determination of reduced bovine superoxide dismutase at pH 5.0 and of anion binding to its active site

Crystals of cytochrome c-553 from Bacillus pasteurii show diffraction to 0.97 A resolution

scientific article published on 01 August 1997

Design of DNA Intercalators Based on 4-Carboranyl-1,8-Naphthalimides: Investigation of Their DNA-Binding Ability and Anticancer Activity

scientific article published on 21 April 2022

Evolutionary divergence and conservation of trypsin

scientific article published on 01 January 1994

First look at RNA in L-configuration

scientific article

Fusarium oxysporum trypsin at atomic resolution at 100 and 283 K: a study of ligand binding

scientific article

Helix-loop-helix peptide foldamers and their use in the construction of hydrolase mimetics

scientific article published on 17 July 2018

High resolution crystal structure of Rubrivivax gelatinosus cytochrome c'

scientific article

High-resolution X-ray structure of the DNA-binding protein HU from the hyper-thermophilic Thermotoga maritima and the determinants of its thermostability

scientific article published on 12 December 2002

High-resolution native and complex structures of thermostable beta-mannanase from Thermomonospora fusca - substrate specificity in glycosyl hydrolase family 5

scientific article

Molecular details of urease inhibition by boric acid: insights into the catalytic mechanism

scientific article published in March 2004

Mouse thymidylate synthase does not show the inactive conformation, observed for the human enzyme

Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

scientific article

Novel Isoniazid-Carborane Hybrids Active in Vitro Against <i>Mycobacterium tuberculosis</i>

scientific article published on 15 December 2020

Oxyonium phosphobetaines – unusually stable nucleophilic catalyst–phosphate complexes formed from H-phosphonates and N-oxides

scholarly article in RSC Advances, vol. 6 no. 18, 2016

Preliminary X-ray diffraction studies of the external functional unit RtH2-e from the Rapana thomasiana

scientific article published on 25 October 2001

Selectivity of Ni(II) and Zn(II) binding to Sporosarcina pasteurii UreE, a metallochaperone in the urease assembly: a calorimetric and crystallographic study

scientific article

Spider Chitin: An Ultrafast Microwave-Assisted Method for Chitin Isolation from Caribena versicolor Spider Molt Cuticle

scholarly article

Stabilization of RNA hairpins using non-nucleotide linkers and circularization

scientific article

Structural consequences of reductive methylation of lysine residues in hen egg white lysozyme: an X-ray analysis at 1.8-A resolution

scientific article

Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy

scientific article

Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats

scientific article published on 01 November 2019

Structural properties of the nickel ions in urease: novel insights into the catalytic and inhibition mechanisms

scholarly article by Stefano Ciurli et al published September 1999 in Coordination Chemistry Reviews

Structural studies of CNG repeats

scientific article

Structure of a complete four-domain chitinase from Moritella marina, a marine psychrophilic bacterium

scientific article

Structure of inhibited trypsin from Fusarium oxysporum at 1.55 A.

scientific article published in January 1995

Structure of mistletoe lectin I from Viscum album in complex with the phytohormone zeatin

scientific article

Structure of the reduced disulfide-bond isomerase DsbC from Escherichia coli

scientific article published on 23 September 2004

Structure-based rationalization of urease inhibition by phosphate: novel insights into the enzyme mechanism

scientific article

Structures of RNA repeats associated with neurological diseases

scientific article published on 28 January 2017

Studies on synthesis and structure of O-beta-D-ribofuranosyl(1"-->2')ribonucleosides and oligonucleotides

scientific article published on 01 January 1998

Synthesis of naphthalimide-carborane and metallacarborane conjugates: Anticancer activity, DNA binding ability

scientific article published on 19 November 2019

Synthetic human prion protein octapeptide repeat binds to the proteinase K active site

scientific article published on 01 December 2004

The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove

scientific article

The 10.8-A structure of Saccharomyces cerevisiae phosphofructokinase determined by cryoelectron microscopy: localization of the putative fructose 6-phosphate binding sites

scientific article

The Crystal Structure of a Streptomyces thermoviolaceus Thermophilic Chitinase Known for Its Refolding Efficiency

scientific article published on 21 April 2020

The X-ray structure of a snake venom Gln48 phospholipase A2 at 1.9A resolution reveals anion-binding sites

scientific article published in March 2004

The complex of Bacillus pasteurii urease with acetohydroxamate anion from X-ray data at 1.55 A resolution

scientific article

The crystal and solution studies of glucosamine-6-phosphate synthase from Candida albicans

scientific article

The crystal structure of the monomeric human SOD mutant F50E/G51E/E133Q at atomic resolution. The enzyme mechanism revisited

scientific article

The crystal structures of eukaryotic phosphofructokinases from baker's yeast and rabbit skeletal muscle

scientific article

The first crystal structure of an RNA racemate

scientific article published on 12 May 2006

The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches--toward anti-sense therapy against TREDs

scientific article published on 29 December 2015

The mistletoe lectin I--phloretamide structure reveals a new function of plant lectins

scientific article

The molecular structure of insecticyanin from the tobacco hornworm Manduca sexta L. at 2.6 A resolution

scientific article

The sequence and X-ray structure of the trypsin from Fusarium oxysporum

scientific article published on 01 June 1993

The stability of the TIM-barrel domain of a psychrophilic chitinase

scientific article published on 30 July 2015

The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity

scientific article (publication date: 3 June 2003)

Three-dimensional structure of myosin subfragment-1: a molecular motor

scientific article

Trypsin revisited: crystallography AT (SUB) atomic resolution and quantum chemistry revealing details of catalysis

scientific article

Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation

scientific article

X-Ray, NMR and Molecular Dynamics Studies on Reduced Bovine Superoxide Dismutase: Implications for the Mechanism

article

List of works by Wojciech Rypniewski

A computationally designed β-amino acid-containing miniprotein

A new proposal for urease mechanism based on the crystal structures of the native and inhibited enzyme from Bacillus pasteurii: why urea hydrolysis costs two nickels

Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).

Asp49 phospholipase A(2)-elaidoylamide complex: a new mode of inhibition

Atomic resolution structure of CAG RNA repeats: structural insights and implications for the trinucleotide repeat expansion diseases

Binding of the plant hormone kinetin in the active site of Mistletoe Lectin I from Viscum album

Comparative crystallization and preliminary X-ray diffraction studies of locked nucleic acid and RNA stems of a tenascin C-binding aptamer

Corrigendum to “X-ray, NMR and molecular dynamics studies on reduced bovine superoxide dismutase: Implications for the mechanism” [Biochem. Biophys. Res. Commun. 202 (1994) 1088–1095]

Crystal Structure of Mouse Thymidylate Synthase in Tertiary Complex with dUMP and Raltitrexed Reveals N-Terminus Architecture and Two Different Active Site Conformations

Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA

Crystal structure of oxidized Bacillus pasteurii cytochrome c553 at 0.97-A resolution

Crystal structure of phosphoramide-phosphorylated thymidylate synthase reveals pSer127, reflecting probably pHis to pSer phosphotransfer

Crystal structure of reduced bovine erythrocyte superoxide dismutase at 1.9 A resolution

Crystal structure of unliganded phosphofructokinase from Escherichia coli

Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome

Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties

Crystal structures of nematode (parasitic T. spiralis and free living C. elegans), compared to mammalian, thymidylate synthases (TS). Molecular docking and molecular dynamics simulations in search for nematode-specific inhibitors of TS.

Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution

Crystallisation under microgravity of mistletoe lectin I from Viscum album with adenine monophosphate and the crystal structure at 1.9 A resolution

Crystallization and preliminary X-ray analysis of the 12S form of phosphofructokinase from Saccharomyces cerevisiae

Crystallization and preliminary X-ray analysis of the isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

Crystallization and preliminary X-ray diffraction analysis of cytochrome c' from Rubrivivax gelatinosus at 1.3 A resolution

Crystallization and preliminary X-ray diffraction studies of a toxic phospholipase A2 from the venom of Vipera ammodytes meridionalis complexed to a synthetic inhibitor

Crystallization and preliminary high-resolution X-ray diffraction analysis of native and beta-mercaptoethanol-inhibited urease from Bacillus pasteurii

Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120

Crystallographic analysis of a thermoactive nitrilase

Crystallographic and X-ray absorption spectroscopic characterization of Helicobacter pylori UreE bound to Ni 2+ and Zn 2+ reveals a role for the disordered C-terminal arm in metal trafficking

Crystallographic characterization of CCG repeats

Crystallographic determination of reduced bovine superoxide dismutase at pH 5.0 and of anion binding to its active site

Crystals of cytochrome c-553 from Bacillus pasteurii show diffraction to 0.97 A resolution

Design of DNA Intercalators Based on 4-Carboranyl-1,8-Naphthalimides: Investigation of Their DNA-Binding Ability and Anticancer Activity

Evolutionary divergence and conservation of trypsin

First look at RNA in L-configuration

Fusarium oxysporum trypsin at atomic resolution at 100 and 283 K: a study of ligand binding

Helix-loop-helix peptide foldamers and their use in the construction of hydrolase mimetics

High resolution crystal structure of Rubrivivax gelatinosus cytochrome c'

High-resolution X-ray structure of the DNA-binding protein HU from the hyper-thermophilic Thermotoga maritima and the determinants of its thermostability

High-resolution native and complex structures of thermostable beta-mannanase from Thermomonospora fusca - substrate specificity in glycosyl hydrolase family 5

Molecular details of urease inhibition by boric acid: insights into the catalytic mechanism

Mouse thymidylate synthase does not show the inactive conformation, observed for the human enzyme

Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

Novel Isoniazid-Carborane Hybrids Active in Vitro Against <i>Mycobacterium tuberculosis</i>

Oxyonium phosphobetaines – unusually stable nucleophilic catalyst–phosphate complexes formed from H-phosphonates and N-oxides

Preliminary X-ray diffraction studies of the external functional unit RtH2-e from the Rapana thomasiana

Selectivity of Ni(II) and Zn(II) binding to Sporosarcina pasteurii UreE, a metallochaperone in the urease assembly: a calorimetric and crystallographic study

Spider Chitin: An Ultrafast Microwave-Assisted Method for Chitin Isolation from Caribena versicolor Spider Molt Cuticle

Stabilization of RNA hairpins using non-nucleotide linkers and circularization

Structural consequences of reductive methylation of lysine residues in hen egg white lysozyme: an X-ray analysis at 1.8-A resolution

Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy

Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats

Structural properties of the nickel ions in urease: novel insights into the catalytic and inhibition mechanisms

Structural studies of CNG repeats

Structure of a complete four-domain chitinase from Moritella marina, a marine psychrophilic bacterium

Structure of inhibited trypsin from Fusarium oxysporum at 1.55 A.

Structure of mistletoe lectin I from Viscum album in complex with the phytohormone zeatin

Structure of the reduced disulfide-bond isomerase DsbC from Escherichia coli

Structure-based rationalization of urease inhibition by phosphate: novel insights into the enzyme mechanism

Structures of RNA repeats associated with neurological diseases

Studies on synthesis and structure of O-beta-D-ribofuranosyl(1"-->2')ribonucleosides and oligonucleotides

Synthesis of naphthalimide-carborane and metallacarborane conjugates: Anticancer activity, DNA binding ability

Synthetic human prion protein octapeptide repeat binds to the proteinase K active site

The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove

The 10.8-A structure of Saccharomyces cerevisiae phosphofructokinase determined by cryoelectron microscopy: localization of the putative fructose 6-phosphate binding sites

The Crystal Structure of a Streptomyces thermoviolaceus Thermophilic Chitinase Known for Its Refolding Efficiency

The X-ray structure of a snake venom Gln48 phospholipase A2 at 1.9A resolution reveals anion-binding sites

The complex of Bacillus pasteurii urease with acetohydroxamate anion from X-ray data at 1.55 A resolution

The crystal and solution studies of glucosamine-6-phosphate synthase from Candida albicans

The crystal structure of the monomeric human SOD mutant F50E/G51E/E133Q at atomic resolution. The enzyme mechanism revisited

The crystal structures of eukaryotic phosphofructokinases from baker's yeast and rabbit skeletal muscle

The first crystal structure of an RNA racemate

The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches--toward anti-sense therapy against TREDs

The mistletoe lectin I--phloretamide structure reveals a new function of plant lectins

The molecular structure of insecticyanin from the tobacco hornworm Manduca sexta L. at 2.6 A resolution

The sequence and X-ray structure of the trypsin from Fusarium oxysporum

The stability of the TIM-barrel domain of a psychrophilic chitinase

The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity

Three-dimensional structure of myosin subfragment-1: a molecular motor

Trypsin revisited: crystallography AT (SUB) atomic resolution and quantum chemistry revealing details of catalysis

Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation