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List of works by Jonne Kotta

A New Network for the Advancement of Marine Biotechnology in Europe and Beyond

scientific article published on 12 May 2020

A Participatory Geospatial Toolkit for Science Integration and Knowledge Transfer Informing SDGs Based Governance and Decision Making

scientific article published in 2020

A meta-analysis of seaweed impacts on seagrasses: generalities and knowledge gaps

scientific article

A rare example of non-native chitons: broad intertidal habitat range and large densities of Sypharochiton pelliserpentis show no evidence of habitat engineering effect in South Australia

scientific article published on 02 June 2019

A somatic genetic clock for clonal species

scientific article published on 10 June 2024

A successful non-native predator, round goby, in the Baltic Sea: generalist feeding strategy, diverse diet and high prey consumption

scholarly article by Kristiina Nurkse et al published 30 April 2016 in Hydrobiologia

A trophic cascade facilitates native habitat providers within assemblages of multiple invasive marine species

scientific article

Alien species in a brackish water temperate ecosystem: annual-scale dynamics in response to environmental variability

scientific article published on 26 March 2011

An Eco-GAME Meta-Evaluation of Existing Methods for the Appreciation of Ecosystem Services

scientific article published on 21 September 2020

Analysis of trophic networks and carbon flows in south-eastern Baltic coastal ecosystems

Aquatic invasive species: introduction to the Special Issue and dynamics of public interest

scientific article

Arctic Sensitivity? Suitable Habitat for Benthic Taxa Is Surprisingly Robust to Climate Change

scientific article published on 03 September 2019

Assessment of the ecological impact of an oil spill on shallow brackish-water benthic communities: a case study in the northeastern Baltic Sea

article by K Herkül & J Kotta published 2012 in Estonian Journal of Ecology

Bayesian inference for oil spill related Net Environmental Benefit Analysis

Bayesian inference for predicting potential oil spill related ecological risk

Biological Invasions in a Changing World: Introduction to the Special Issue

scientific article published in 2023

Chinese mitten crab Eriocheir sinensis in the Baltic Sea—a supply-side invader?

article

Cleaning up seas using blue growth initiatives: Mussel farming for eutrophication control in the Baltic Sea

scientific article published on 19 December 2019

Comparison of benthic and pelagic suspension feeding in shallow water habitats of the Northeastern Baltic Sea

article by Velda Lauringson et al published October 2009 in Marine Ecology

Comparisons of individual and community photosynthetic production indicate light limitation in the shallow water macroalgal communities of the Northern Baltic Sea

scholarly article by Merli Pärnoja et al published 13 August 2013 in Marine Ecology

Competition for food between the introduced polychaete Marenzelleria viridis (Verrill) and the native amphipod Monoporeia affinis Lindström in the Baltic Sea

Complex plant–herbivore–predator interactions in a brackish water seaweed habitat

article

Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, November 2016

Contribution of scale-dependent environmental variability on the biomass patterns of drift algae and associated invertebrates in the Gulf of Riga, northern Baltic Sea

article published in 2008

Correction: Universal framework for assessing the environmental impact of marine non-indigenous species in different situations of data availability

scientific article published on 11 September 2024

Current status, advancements and development needs of geospatial decision support tools for marine spatial planning in European seas

scientific article published in August 2021

Defining the coastal water quality in Estonia based on benthic invertebrate communities

scientific article published in 2012

Description of a new species of Sabellidae (Polychaeta, Annelida) from fresh and brackish waters in Europe, with some remarks on the branchial crown of Laonome

article published in 2018

Detecting Long Time Changes in Benthic Macroalgal Cover Using Landsat Image Archive

scientific article published on 11 June 2020

Diet composition and feeding activity of larval spring-spawning herring: Importance of environmental variability

article

Diet of musselsMytilus trossulusandDreissena polymorphain a brackish nontidal environment

scientific article published in 2013

Distribution and population characteristics of the alien talitrid amphipod Orchestia cavimana in relation to environmental conditions in the Northeastern Baltic Sea

Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions - a global review and meta-analysis

scientific article

Does thalli complexity and biomass affect the associated flora and fauna of two co-occurring Fucus species in the Baltic Sea?

scientific article published in 2014

Does the growth rate of driftingFurcellaria lumbricalisandCoccotylus truncatusdepend on their proportion and density?

Ecological consequence of the introduction of the polychaete Marenzelleria cf. viridis into a shallow-water biotope of the northern Baltic Sea

article by Jonne Kotta et al published December 2001 in Journal of Sea Research

Ecological consequences of biological invasions: three invertebrate case studies in the north-eastern Baltic Sea

Ecological impacts of invading seaweeds: a meta-analysis of their effects at different trophic levels

article

Ecological niche differentiation between native and non-native shrimps in the northern Baltic Sea

scientific article published in 2017

Ecosystem impacts of the widespread non-indigenous species in the Baltic Sea: literature survey evidences major limitations in knowledge

article

Editorial. Special issue on people and plants: a humanitarian view

article

Effect of observation method on the perception of community structure and water quality in a brackish water ecosystem

scientific article published in 2009

Effect of short-term elevated nutrients and mesoherbivore grazing on photosynthesis of macroalgal communities

scholarly article by M Pärnoja et al published 2014 in Proceedings of the Estonian Academy of Sciences

Effectiveness of common benthic macrofaunal sampling methodology in boulder and cobble reefs

scientific article published in September 2020

Effects of different types of mechanical disturbances on a charophyte dominated macrophyte community

scientific article published in 2010

Effects of eelgrass(Zostera marina)canopy removal and sediment addition on sediment characteristics and benthic communities in the Northern Baltic Sea

scientific article published in 2009

Effects of the suspension feeding musselMytilus trossuluson a brackish water macroalgal and associated invertebrate community

scientific article published in 2009

Environmental factors influencing the biodeposition of the suspension feeding bivalve Dreissena polymorpha (Pallas): Comparison of brackish and freshwater populations

scientific article published in 2007

Environmental heterogeneity associated with European perch (Perca fluviatilis) predation on invasive round goby (Neogobius melanostomus).

scientific article

Environmental niche separation between native and non-native benthic invertebrate species: Case study of the northern Baltic Sea.

scientific article

Epiphytes and associated fauna on the brown alga Fucus vesiculosus in the Baltic and the North Seas in relation to different abiotic and biotic variables

scientific article published in 2011

Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, October 2016

Establishing Functional Relationships between Abiotic Environment, Macrophyte Coverage, Resource Gradients and the Distribution of Mytilus trossulus in a Brackish Non-Tidal Environment

scientific article published on 28 August 2015

Experimental evaluation of the effects of the novel predators, round goby and mud crab on benthic invertebrates in the Gulf of Riga, Baltic Sea

scientific article published on 22 December 2017

Factors affecting the recruitment of Amphibalanus improvisus and Dreissena polymorpha in a highly eutrophic brackish bay

scientific article published in 2017

Factors controlling long-term changes of the eutrophicated ecosystem of Pärnu Bay, Gulf of Riga

scholarly article by Jonne Kotta published in February 2004

Feasibility of hyperspectral remote sensing for mapping benthic macroalgal cover in turbid coastal waters—a Baltic Sea case study

scientific article published in 2006

First evidence on the epiphytic macroalgaPylaiella littoralison the prawnPalaemon adspersus

scientific article (publication date: 2013)

First record of Chelicorophium curvispinum (G.O. Sars, 1895) from Lake Mälaren, SE Sweden

scientific article published on 18 November 2017

Food and habitat choice of the isopod Idotea baltica in the northeastern Baltic Sea

Food selection of Coregonus lavaretus in a brackish water ecosystem

scientific article published on 11 January 2011

Food web responses to eutrophication control in a coastal area of the Baltic Sea

scientific article published in November 2020

Foreword. Special issue on the ecological status of marine communities

scientific article published in 2012

From ecosystems to socio-economic benefits: A systematic review of coastal ecosystem services in the Baltic Sea

scientific article published on 30 September 2020

Functional traits of marine macrophytes predict primary production

scientific article published in 2016

Geographic patterns of biodiversity in European coastal marine benthos

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, September 2016

Geographic variation in fitness-related traits of the bladderwrack Fucus vesiculosus along the Baltic Sea-North Sea salinity gradient

scientific article published on 23 July 2019

Gulf of Riga and Pärnu Bay

Habitat Features and Their Influence on the Restoration Potential of Marine Habitats in Europe

scientific article published on 07 April 2020

Habitat mapping in the European Seas - is it fit for purpose in the marine restoration agenda?

scientific article published on 21 May 2019

High climate velocity and population fragmentation may constrain climate-driven range shift of the key habitat former <i>Fucus vesiculosus</i>

scientific article published on 02 March 2018

High fecundity and predation pressure of the invasive Gammarus tigrinus cause decline of indigenous gammarids

article

How strong is the effect of invasive ecosystem engineers on the distribution patterns of local species, the local and regional biodiversity and ecosystem functions?

article

Human activities and resultant pressures on key European marine habitats: An analysis of mapped resources

scholarly article by Thanos Dailianis published in December 2018

Hypoxia is increasing in the coastal zone of the Baltic Sea

scientific article

Impacts of changing climate on the non-indigenous invertebrates in the northern Baltic Sea by end of the twenty-first century

Implementation of the Sustainability Compass: A Bottom-Up Social Learning Approach in Initial Pilot Studies

scientific article published on 19 May 2024

In situ Evidence on the Role of Benthic Invertebrates on the Decomposition of Drifting Algal Mats in a Brackish Water Ecosystem

article

In situ production of charophyte communities under reduced light conditions in a brackish-water ecosystem

scientific article published in 2014

In-air spectral signatures of the Baltic Sea macrophytes and their statistical separability

article published in 2014

Influence of the Thin Drift Algal Mats on the Distribution of Macrozoobenthos in Kõiguste Bay, NE Baltic Sea

Influence of the local abiotic environment, weather and regional nutrient loading on macrobenthic invertebrate feeding groups in a shallow brackish water ecosystem

scholarly article by Triin Veber et al published 30 December 2009 in Oceanologia

Integrating experimental and distribution data to predict future species patterns

scientific article published in Scientific Reports

Integrating maritime cultural heritage into maritime spatial planning in Estonia

scientific article published in January 2023

Inter-annual variations in biomass of loose lying algae Furcellaria–Coccotylus community: The relative importance of local versus regional environmental factors in the West Estonian Archipelago

Interregional variation of free-living nematode assemblages in tropical coral sands ⬇️

scientific article published in 2001

Introduction of a functionally novel consumer to a low diversity system: Effects of the mud crab Rhithropanopeus harrisii on meiobenthos

scientific article published in 2018

Is a rapid expansion of the invasive amphipod Gammarus tigrinus Sexton, 1939 associated with its niche selection: a case study in the Gulf of Finland, the Baltic Sea

scholarly article by Jonne Kotta et al published September 2013 in Aquatic Invasions

Knowledge to decision in dynamic seas: Methods to incorporate non-indigenous species into cumulative impact assessments for maritime spatial planning

article

Laboratory analysis of the habitat occupancy of the crab Rhithropanopeus harrisii (Gould) in an invaded ecosystem: The north-eastern Baltic Sea

scholarly article by Kristiina Nurkse published in March 2015

Large-scale variation in combined impacts of canopy loss and disturbance on community structure and ecosystem functioning

scientific article

Linking atmospheric, terrestrial and aquatic environments: Regime shifts in the Estonian climate over the past 50 years

scientific article published in PLoS ONE

Linking nutrient loading, local abiotic variables, richness and biomasses of macrophytes, and associated invertebrate species in the north-eastern Baltic Sea

scientific article published in 2014

Linking the Structure of Benthic Invertebrate Communities and the Diet of Native and Invasive Fish Species in a Brackish Water Ecosystem

Macroalgal blooms alter community structure and primary productivity in marine ecosystems

scientific article

Mapping Baltic Sea shallow water environments with airborne remote sensing

article by Ele Vahtmäe et al published November 2012 in Russian Academy of Sciences. Oceanology

Mapping of Structural and Functional Characteristics of Reef Habitats

Marine environmental vulnerability and cumulative risk profiles to support ecosystem-based adaptive maritime spatial planning

scientific article published in 2018

Marine protected areas modulate habitat suitability of the invasive round goby (Neogobius melanostomus) in the Baltic Sea

scientific article published on 19 September 2019

Marine spatial planning as a tool for promoting sustainable economic development including tourism and recreation in a coastal area: an example from Pärnu Bay, NE Baltic Sea

article

Mean weight and total biomass of zooplankton as a core indicator of biodiversity of the Marine Strategy Framework Directive: an example of the Gulf of Riga

scientific article published in 2014

Meta-analysis on the ecological impacts of widely spread non-indigenous species in the Baltic Sea

Modelling habitat range and seasonality of a new, non-indigenous polychaete Laonome sp. (Sabellida, Sabellidae) in Pärnu Bay, the north-eastern Baltic Sea

article published in 2015

Molecular genetic differentiation of native populations of Mediterranean blue mussels, <i>Mytilus galloprovincialis</i> Lamarck, 1819, and the relationship with environmental variables

scientific article published in 2022

Multi-use of offshore wind farms with low-trophic aquaculture can help achieve global sustainability goals

scientific article published on 29 November 2023

Mussels of a marginal population affect the patterns of ambient macrofauna: A case study from the Baltic Sea.

scientific article

Next-Generation Smart Response Web (NG-SRW): An Operational Spatial Decision Support System for Maritime Oil Spill Emergency Response in the Gulf of Finland (Baltic Sea)

scientific article published on 9 June 2021

Novel crab predator causes marine ecosystem regime shift

scientific article published on 12 April 2018

Ocean acidification may threaten a unique seaweed community and associated industry in the Baltic Sea

scientific article published on 27 October 2019

Oil accident response simulation: allocation of potential places of refuge

On the myths of indicator species: issues and further consideration in the use of static concepts for ecological applications

scientific article

Online tool to integrate evidence-based knowledge into cumulative effects assessments: Linking human pressures to multiple nature assets

scientific article published in December 2020

Operationalisation of ecosystem services in support of ecosystem-based marine spatial planning: insights into needs and recommendations

scientific article published in 2021

PCDD/Fs in sprat (Sprattus sprattus balticus) from the Gulf of Finland, the Baltic Sea

scientific article published on 05 May 2006

Palaemon elegans Rathke, 1837 (Caridea: Palaemonoidea: Palaemonidae) established in the Gulf of Finland

scholarly article by Tarja Katajisto et al published 2013 in Bioinvasions records

Precise age estimation in clonal species using a somatic genetic clock

scientific article published on 9 November 2023

Predicting lake dissolved organic carbon at a global scale

scientific article published on 21 May 2020

Predicting macroalgal pigments (chlorophyll a, chlorophyll b, chlorophyll a + b, carotenoids) in various environmental conditions using high-resolution hyperspectral spectroradiometers

Predicting species cover of marine macrophyte and invertebrate species combining hyperspectral remote sensing, machine learning and regression techniques

scientific article

Predicting the cover and richness of intertidal macroalgae in remote areas: a case study in the Antarctic Peninsula

scientific article published on 19 August 2018

Random forest assessment of correlation between environmental factors and genetic differentiation of populations: Case of marine mussels Mytilus

scholarly article by Tomasz Kijewski et al published August 2018 in Oceanologia

Rangia cuneata (G. B. Sowerby I, 1831) continues its invasion in the Baltic Sea: the first record in Pärnu Bay, Estonia

scholarly article by Tiia Möller & Jonne Kotta published 2017 in Bioinvasions records

Rating species sensitivity throughout gradient systems – a consistent approach for the Baltic Sea

scientific article published in February 2016

Realized niche width of a brackish water submerged aquatic vegetation under current environmental conditions and projected influences of climate change

scientific article

Relating remotely sensed optical variability to marine benthic biodiversity

scientific article (publication date: 2013)

Relationship between biological characteristics of fish and their contamination with trace metals: a case study of perchPerca fluviatilisL. in the Baltic Sea

Relationship between shoreline substrate type and sensitivity of seafloor habitats at risk to oil pollution

article by R. Leiger et al published September 2012 in Ocean and Coastal Management

Relationships between biodiversity and the stability of marine ecosystems: Comparisons at a European scale using meta-analysis

scholarly article by Mathieu Cusson published in April 2015

Relationships between mechanical disturbance and biomass of the invasive amphipodGammarus tigrinuswithin a charophyte-dominated macrophyte community

scientific article published in 2013

Response of zoobenthic communities to changing eutrophication in the northern Baltic Sea

Response to a letter to editor regarding Kotta et al. 2020: Cleaning up seas using blue growth initiatives: Mussel farming for eutrophication control in the Baltic Sea

scientific article published on 19 April 2020

Restoration actions in marine ecosystems: a global analysis

Restoration actions in marine ecosystems: a global analysis

Role of physical water properties and environmental disturbances on the diversity of coastal macrophyte and invertebrate communities in a brackish water ecosystem

SHORT COMMUNICATION. Rapid establishment of the alien crab Rhithropanopeus harrisii (Gould) in the Gulf of Riga

article by Jonne Kotta & Henn Ojaveer published 2012 in Estonian Journal of Ecology

Sandy coasts

Scale-Specific Patterns of the Production of the Charophyte Chara aspera in the Brackish Baltic Sea: Linking Individual and Community Production and Biomass Growth

scientific article published on 30 April 2021

Scale-dependent effects of nutrient loads and climatic conditions on benthic and pelagic communities in the Gulf of Finland

scholarly article by Arno Põllumäe et al published October 2009 in Marine Ecology

Scale-specific effects of environmental variables on benthic macrophyte and invertebrate communities in the Vaindloo area, the central Gulf of Finland

scholarly article by I Kuprijanov et al published 2011 in Estonian Journal of Ecology

Seagrass beds reveal high abundance of microplastic in sediments: A case study in the Baltic Sea

scientific article published in July 2021

Seasonal Changes in Biodeposition and Grazing Potential of the Suspension Feeding Bivalve Mytilus trossulus

Seasonal changes in situ grazing of the mesoherbivores Idotea baltica and Gammarus oceanicus on the brown algae Fucus vesiculosus and Pylaiella littoralis in the central Gulf of Finland, Baltic Sea

scholarly article by Jonne Kotta et al published 20 June 2006 in Hydrobiologia

Seasonal trends in horizontal and vertical patterns of zoopsammon in the brackish Baltic Sea in relation to key environmental variables

scholarly article in Proceedings of the Biological Society of Washington, vol. 127 no. 1, July 2014

Seasonal variability in the grazing potential of the invasive amphipod Gammarus tigrinus and the native amphipod Gammarus salinus (Amphipoda: Crustacea) in the northern Baltic Sea

Seasonal variability in the structure and functional diversity of psammic rotifer communities: role of environmental parameters

Seasonal variation in invertebrate grazing on Chara connivens and C. tomentosa in Kõiguste Bay, NE Baltic Sea

Separate and combined effects of habitat-specific fish predation on the survival of invasive and native gammarids

Separate and interactive effects of eutrophication and climate variables on the ecosystem elements of the Gulf of Riga

scientific article published in 2009

Shipping and natural environmental conditions determine the distribution of the invasive non-indigenous round goby Neogobius melanostomus in a regional sea

scientific article published in 2016

Spatial distribution of marine benthic habitats in the Estonian coastal sea, northeastern Baltic Sea

scientific article published in 2013

Spatiotemporal variability in the eelgrass Zostera marina L. in the north-eastern Baltic Sea: canopy structure and associated macrophyte and invertebrate communities

scientific article published in 2014

Specialization among amphipods: the invasiveGammarus tigrinushas narrower niche space compared to native gammarids

scientific article published in 2016

Stability of rocky intertidal communities, in response to species removal, varies across spatial scales

scientific article published on 14 June 2021

Taxonomic composition of zoopsammon in fresh and brackish waters of Estonia, a Baltic province ecoregion of Europe

article

Temporal stability of European rocky shore assemblages: variation across a latitudinal gradient and the role of habitat-formers

scientific article published on 7 March 2012

Testing effects of shore height level, sediment characteristics and vegetation cover on the seasonality of zoopsammon communities in the two boreal lakes differing in their trophic state

article

The Baltic Sea scale inventory of benthic faunal communities

scientific article published on 26 January 2016

The Essentials of Marine Biotechnology

scientific article published on 16 March 2021

The effects of exotic seaweeds on native benthic assemblages: variability between trophic levels and influence of background environmental and biological conditions

The first finding of the palaemonid shrimpPalaemon elegansRathke in the Estonian coastal sea

scientific article published in 2012

The importance of benthic-pelagic coupling for marine ecosystem functioning in a changing world

scientific article

The invasive amphipod Gammarus tigrinus Sexton, 1939 displaces native gammarid amphipods from sheltered macrophyte habitats of the Gulf of Riga

scientific article published in 2016

The overlooked role of taphonomy in ecology: post‐mortem processes can outweigh recruitment effects on community functions

scientific article published in 2020

The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 97 no. 3, December 2016

The short-term effects of crude oil on the survival of different size-classes of cladoceran Daphnia magna (Straus, 1820)

scholarly article by Lennart Lennuk et al published January 2015 in Oceanologia

There are no whole truths in meta-analyses: all their truths are half-truths

scientific article published on 28 May 2015

Towards Efficient Mapping of Greenhouse Gas Emissions: A Case Study of the Port of Tallinn

scientific article published on 14 June 2023

Towards environmentally friendly finfish farming: A potential for mussel farms to compensate fish farm effluents

scientific article published on 24 April 2023

Trans-Atlantic Distribution and Introgression as Inferred from Single Nucleotide Polymorphism: Mussels Mytilus and Environmental Factors

scientific article published on 10 May 2020

Trophic interactions between native and alien palaemonid prawns and an alien gammarid in a brackish water ecosystem

scholarly article by Ivan Kuprijanov published in January 2015

Universal framework for assessing the environmental impact of marine non-indigenous species in different situations of data availability

scientific article published on 25 June 2024

Unveiling commonalities in understudied habitats of boulder-reefs: life-history traits of the widespread invertebrate and algal inhabitants

scientific article published on 20 September 2018

Use case of biomass-based benthic invertebrate index for brackish waters in connection to climate and eutrophication

scientific article published in 2012

Valorization of Marine Waste: Use of Industrial By-Products and Beach Wrack Towards the Production of High Added-Value Products

scientific article published in 2021

Water salinity and benthic macrophyte communities are the key variables defining the distribution pattern of benthic faunal assemblages in the shallow water areas of the Gulf of Riga

article by J Kotta published 2013 in Estonian Journal of Ecology

What are the effects of macroalgal blooms on the structure and functioning of marine ecosystems? A systematic review protocol

article

Where Is More Important Than How in Coastal and Marine Ecosystems Restoration

scientific article published on 13 October 2021

Which environmental scales and factors matter for mesozooplankton communities in a shallow brackish water ecosystem?

article by Lennart Lennuk et al published January 2016 in Journal of Plankton Research

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