List of works - Marc A. Suchard

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

scientific article (publication date: May 2012)

Bayesian phylogenetics with BEAUti and the BEAST 1.7

scientific article

BEAST 2: a software platform for Bayesian evolutionary analysis

scientific article (publication date: April 2014)

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

scholarly article by Andrew Rambaut et al published 1 September 2018 in Systematic Biology

Bayesian phylogeography finds its roots

scientific article

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

scientific article published on 11 April 2008

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

scientific article published on 22 October 2012

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

scientific article published on March 4, 2010

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

scientific article

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

scientific article published in January 2018

Species-specific responses of Late Quaternary megafauna to climate and humans

scientific article (publication date: 2 November 2011)

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

scientific article

Alignment uncertainty and genomic analysis

scientific article published on January 2008

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

scientific article

Bayesian random local clocks, or one rate to rule them all

scientific article (publication date: 31 August 2010)

Many-core algorithms for statistical phylogenetics

scientific article

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

scientific article (publication date: March 2013)

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

scientific article published on 8 June 2015

Stability-mediated epistasis constrains the evolution of an influenza protein

scientific article published in 2013

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

scientific article

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

scientific article

Joint Bayesian Estimation of Alignment and Phylogeny

scientific article (publication date: June 2005)

Counting labeled transitions in continuous-time Markov models of evolution

scientific article published on 14 September 2007

Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity

scientific article

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

2006 scientific article

Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement

scientific article

Integrating influenza antigenic dynamics with molecular evolution

scientific article

Virus genomes reveal factors that spread and sustained the Ebola epidemic

scientific article (publication date: 12 April 2017)

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

scientific article

Mapping the origins and expansion of the Indo-European language family

scientific article

Ancient hybridization and an Irish origin for the modern polar bear matriline

scientific article

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

scientific article

Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours

scientific article published in October 2006

Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin: observational and interventional studies in humans

scientific article published in July 2002

Use of electrochemical DNA biosensors for rapid molecular identification of uropathogens in clinical urine specimens

scientific article published in February 2006

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

scientific article

A Bayesian phylogenetic method to estimate unknown sequence ages

scientific article

Pomegranate ellagitannin-derived metabolites inhibit prostate cancer growth and localize to the mouse prostate gland

scientific article

Spatial dynamics of human-origin H1 influenza A virus in North American swine

scientific article

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

scientific article

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

scientific article (publication date: 23 March 2010)

Fast, accurate and simulation-free stochastic mapping

scientific article published in December 2008

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data

scientific article published on October 1, 2003

Phylodynamics and human-mediated dispersal of a zoonotic virus

scientific article (publication date: 28 October 2010)

Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer

scientific article published on May 2004

Dual multiple change-point model leads to more accurate recombination detection.

scientific article published on 24 May 2005

Evaluating the impact of database heterogeneity on observational study results

scientific article

Genomic and epidemiological monitoring of yellow fever virus transmission potential

scientific article published in Science

Learning to count: robust estimates for labeled distances between molecular sequences

scientific article published on 08 January 2009

List of works by Marc A. Suchard

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Bayesian phylogenetics with BEAUti and the BEAST 1.7

BEAST 2: a software platform for Bayesian evolutionary analysis

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Bayesian phylogeography finds its roots

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

Species-specific responses of Late Quaternary megafauna to climate and humans

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

Alignment uncertainty and genomic analysis

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

Bayesian random local clocks, or one rate to rule them all

Many-core algorithms for statistical phylogenetics

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

Stability-mediated epistasis constrains the evolution of an influenza protein

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

Joint Bayesian Estimation of Alignment and Phylogeny

Counting labeled transitions in continuous-time Markov models of evolution

Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement

Integrating influenza antigenic dynamics with molecular evolution

Virus genomes reveal factors that spread and sustained the Ebola epidemic

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

Mapping the origins and expansion of the Indo-European language family

Ancient hybridization and an Irish origin for the modern polar bear matriline

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours

Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin: observational and interventional studies in humans

Use of electrochemical DNA biosensors for rapid molecular identification of uropathogens in clinical urine specimens

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

A Bayesian phylogenetic method to estimate unknown sequence ages

Pomegranate ellagitannin-derived metabolites inhibit prostate cancer growth and localize to the mouse prostate gland

Spatial dynamics of human-origin H1 influenza A virus in North American swine

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

Fast, accurate and simulation-free stochastic mapping

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data

Phylodynamics and human-mediated dispersal of a zoonotic virus

Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer

Dual multiple change-point model leads to more accurate recombination detection.

Evaluating the impact of database heterogeneity on observational study results

Genomic and epidemiological monitoring of yellow fever virus transmission potential

Learning to count: robust estimates for labeled distances between molecular sequences