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List of works by Marc A. Suchard

1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America

scientific article (publication date: 26 October 2016)

A Bayesian model for the common effects of multiple predictors on mixed outcomes ⬇️

scientific article published on August 31, 2011

A Bayesian phylogenetic method to estimate unknown sequence ages

scientific article

A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution

scientific article published on 18 October 2016

A comparison of the empirical performance of methods for a risk identification system

scientific article

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection

scientific article published on 12 October 2012

A nonparametric method for accommodating and testing across-site rate variation

scientific article published in December 2007

A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses ⬇️

scientific article published on June 30, 2012

A plea to stop using the case-control design in retrospective database studies

scientific article published on 22 August 2019

A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data

scientific article published on 06 September 2021

A surrogate ℓ0 sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data

scientific article published on 08 December 2019

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

scientific article published on 02 November 2023

ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. ⬇️

scientific article published on June 2015

Accelerating Bayesian inference of dependency between mixed-type biological traits

scientific article published in 2023

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

scientific article published on 09 October 2020

Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study

scientific article published on 23 June 2020

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

scientific article published on 22 October 2012

Accurate quantification of within- and between-host HBV evolutionary rates requires explicit transmission chain modelling.

scientific article published on July 2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

scientific article

Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil

scientific article

Alignment uncertainty and genomic analysis

scientific article published on January 2008

Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesity

scientific article

An international characterisation of patients hospitalised with COVID-19 and a comparison with those previously hospitalised with influenza

scientific article published on 26 April 2020

Analysis of Viral Genetics for Estimating Diffusion of Influenza A H6N1.

scientific article published on 23 March 2015

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

scientific article (publication date: 23 March 2010)

Ancient hybridization and an Irish origin for the modern polar bear matriline

scientific article

Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

scientific article published on 10 May 2022

Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains.

scientific article published on January 2003

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China

scientific article published on 02 March 2020

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

scientific article

Association of Ticagrelor vs Clopidogrel With Net Adverse Clinical Events in Patients With Acute Coronary Syndrome Undergoing Percutaneous Coronary Intervention

scientific article published on 01 October 2020

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

2006 scientific article

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

scientific article published on 01 November 2019

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

scientific article

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019

BEAST 2: a software platform for Bayesian evolutionary analysis

scientific article (publication date: April 2014)

Baseline characteristics, management, and outcomes of 55,270 children and adolescents diagnosed with COVID-19 and 1,952,693 with influenza in France, Germany, Spain, South Korea and the United States: an international network cohort study

scientific article published on 30 October 2020

Baseline phenotype and 30-day outcomes of people tested for COVID-19: an international network cohort including >3.32 million people tested with real-time PCR and >219,000 tested positive for SARS-CoV-2 in South Korea, Spain and the United States

scientific article published on 27 October 2020

Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1.

scientific article published on 3 September 2015

Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation

scientific article published on 24 June 2016

Bayesian inference of evolutionary histories under time-dependent substitution rates

scientific article published on 01 August 2019

Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza

scientific article published on 18 January 2017

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

scientific article published in January 2018

Bayesian phylogenetics with BEAUti and the BEAST 1.7

scientific article

Bayesian phylogeography finds its roots

scientific article

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction

scientific article

Bayesian random local clocks, or one rate to rule them all

scientific article (publication date: 31 August 2010)

Bayesian selection of nucleotide substitution models and their site assignments

scientific article published on 11 December 2012

Biologically inspired phylogenetic models strongly outperform the no common mechanism model.

scientific article

Birth/birth-death processes and their computable transition probabilities with biological applications

scientific article

Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada

scientific article

COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses

scientific article published on 07 November 2024

COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

scientific article published on 21 March 2020

Characteristics and outcomes of COVID-19 patients with COPD from the United States, South Korea, and Europe

scientific article published in 2023

Characteristics, outcomes, and mortality amongst 133,589 patients with prevalent autoimmune diseases diagnosed with, and 48,418 hospitalised for COVID-19: a multinational distributed network cohort analysis

scientific article published on 27 November 2020

Characterizing treatment pathways at scale using the OHDSI network

scientific article

Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

scientific article

Comment on "How pharmacoepidemiology networks can manage distributed analyses to improve replicability and transparency and minimize bias"

article

Comparative First-Line Effectiveness and Safety of ACE (Angiotensin-Converting Enzyme) Inhibitors and Angiotensin Receptor Blockers: A Multinational Cohort Study

scientific article published in September 2021

Comparative safety and effectiveness of alendronate versus raloxifene in women with osteoporosis

scientific article published on 06 July 2020

Comparison of Cardiovascular and Safety Outcomes of Chlorthalidone vs Hydrochlorothiazide to Treat Hypertension

scientific article published on 17 February 2020

Comparison of First-Line Dual Combination Treatments in Hypertension: Real-World Evidence from Multinational Heterogeneous Cohorts

scientific article published on 28 August 2019

Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis

scientific article published on 24 October 2019

Computational methods for birth-death processes.

scientific article published on 2 January 2018

Consistency and convergence rate of phylogenetic inference via regularization

scholarly article by Vu Dinh et al published August 2018 in Annals of Statistics

Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease

scientific article published on December 2006

Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in Brazil

scientific article

Correction: Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus.

scientific article

Counting labeled transitions in continuous-time Markov models of evolution

scientific article published on 14 September 2007

Dating the time of viral subtype divergence

scientific article

Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study

scientific article published on 06 October 2020

Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data

article

Determinants of dengue virus dispersal in the Americas

scientific article published on 01 July 2020

Development of an advanced electrochemical DNA biosensor for bacterial pathogen detection

scientific article published on April 2007

Discussion: An estimate of the science-wise false discovery rate and application to the top medical literature.

scientific article published on 25 September 2013

Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution

scientific article published on July 2015

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

scientific article published on 06 December 2019

Divergence dating using mixed effects clock modelling: An application to HIV-1

scientific article published on 01 July 2019

Diversity, Disparity, and Evolutionary Rate Estimation for Unresolved Yule Trees ⬇️

scientific article published on February 15, 2013

Does history repeat itself? Wavelets and the phylodynamics of influenza A

scientific article published on 8 December 2011

Dual multiple change-point model leads to more accurate recombination detection.

scientific article published on 24 May 2005

Early nodal response as a predictor for necessity of functional neck dissection after chemoradiation

scientific article published in November 2004

Ebola vaccine–induced protection in nonhuman primates correlates with antibody specificity and Fc-mediated effects

scientific article published in 2021

Emerging Concepts of Data Integration in Pathogen Phylodynamics ⬇️

scientific article

Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA

scientific article

Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data

scientific article published on 12 March 2018

Empirical performance of the self-controlled case series design: lessons for developing a risk identification and analysis system

scientific article

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

scientific article published on 06 November 2020

Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study

scientific article published on 25 October 2020

Estimating effective population size changes from preferentially sampled genetic sequences

scientific article published on 12 October 2020

Estimation for general birth-death processes

scientific article published on April 2014

Evaluating large-scale propensity score performance through real-world and synthetic data experiments

scientific article published on 01 December 2018

Evaluating the impact of database heterogeneity on observational study results

scientific article

Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy

scientific article

Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach

scientific article published on October 2004

Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection

scientific article (publication date: September 2016)

Fast, accurate and simulation-free stochastic mapping

scientific article published in December 2008

Fitting Birth-Death Processes to Panel Data with Applications to Bacterial DNA Fingerprinting

scientific article

Fusing a Bayesian case velocity model with random forest for predicting COVID-19 in the U.S.

scientific article published on 18 May 2020

Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty

scientific article

Generalized linear models for identifying predictors of the evolutionary diffusion of viruses

scientific article

Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp.

scientific article

Genomic and epidemiological monitoring of yellow fever virus transmission potential

scientific article published in Science

Genomic and epidemiological monitoring of yellow fever virus transmission potential

article

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

scientific article published on 20 July 2023

Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus

scientific article published on 14 May 2020

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

scientific article published on 8 June 2015

Gradients do grow on trees: a linear-time 𝒪 (N)-dimensional gradient for statistical phylogenetics

scientific article published on 27 May 2020

Graph hierarchies for phylogeography ⬇️

scientific article published on 04 February 2013

Graphics Processing Units and High-Dimensional Optimization

scientific article published on August 2010

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

scientific article

Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework

scientific article published on 30 March 2020

Hierarchical Models for Multiple, Rare Outcomes Using Massive Observational Healthcare Databases

scientific article published on 17 July 2016

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data ⬇️

scientific article published on October 1, 2003

High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE

scientific article published on 01 January 2019

High-dimensional, massive sample-size Cox proportional hazards regression for survival analysis

scientific article published on 04 October 2013

Host ecology determines the dispersal patterns of a plant virus

scientific article published on 16 December 2015

How Confident Are We about Observational Findings in Healthcare: A Benchmark Study

scientific article published on 31 January 2020

Identifying predictors of time-inhomogeneous viral evolutionary processes

scientific article published on July 2016

Impact of CCR5delta32 Host Genetic Background and Disease Progression on HIV-1 Intrahost Evolutionary Processes: Efficient Hypothesis Testing through Hierarchical Phylogenetic Models ⬇️

scientific article published on December 6, 2010

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

scientific article (publication date: March 2013)

Improving phylogenetic analyses by incorporating additional information from genetic sequence databases

scientific article

Improving reproducibility by using high-throughput observational studies with empirical calibration

In Search of Covariates of HIV-1 Subtype B Spread in the United States-A Cautionary Tale of Large-Scale Bayesian Phylogeography

scientific article published on 05 February 2020

Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region

scientific article published on 01 April 2020

Incorporating indel information into phylogeny estimation for rapidly emerging pathogens

scientific article

Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography

scientific article published on 01 January 2019

Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography

scientific article

Integrating influenza antigenic dynamics with molecular evolution

scientific article

Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics ⬇️

scientific article published on August 29, 2003

Interpreting observational studies: why empirical calibration is needed to correct p‐values ⬇️

scientific article published on July 30, 2013

Joint Bayesian Estimation of Alignment and Phylogeny

scientific article (publication date: June 2005)

Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study

scientific article published on 22 August 2020

Large-scale evidence generation and evaluation across a network of databases for type 2 diabetes mellitus (LEGEND-T2DM): a protocol for a series of multinational, real-world comparative cardiovascular effectiveness and safety studies

scientific article published on 09 June 2022

Learning to count: robust estimates for labeled distances between molecular sequences

scientific article published on 08 January 2009

Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement

scientific article

Many-core algorithms for statistical phylogenetics

scientific article

Mapping the origins and expansion of the Indo-European language family

scientific article

Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST

scientific article published on 16 May 2020

Massive parallelization of serial inference algorithms for a complex generalized linear model

scientific article

Measles virus and rinderpest virus divergence dated to the sixth century BCE

scientific article published on 01 June 2020

Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak

scientific article published on 01 January 2019

Modeling Protein Expression and Protein Signaling Pathways

scientific article published on January 2011

Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States

scientific article

Models for estimating bayes factors with applications to phylogeny and tests of monophyly

scientific article

Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication ⬇️

scientific article published on May 23, 2012

Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer

scientific article published on May 2004

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

scientific article (publication date: May 2012)

Multiple self-controlled case series for large-scale longitudinal observational databases

scientific article published on 11 October 2013

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

scientific article

Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage.

scientific article published in October 2002

On the biogeography of Centipeda: a species-tree diffusion approach

scientific article (publication date: March 2014)

On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model

scientific article published on 21 November 2019

Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction

scientific article published on 26 February 2020

Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations

scientific article published on 23 February 2023

OutbreakTools: a new platform for disease outbreak analysis using the R software

scientific article (publication date: June 2014)

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

scientific article

Phylodynamics and human-mediated dispersal of a zoonotic virus

scientific article (publication date: 28 October 2010)

Phylogenetic Factor Analysis

scientific article published on 7 August 2017

Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes

scientific article published on 28 December 2006

Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A.

scientific article published on 21 December 2011

Phylogeography and population dynamics of dengue viruses in the Americas

scientific article

Phylogeography of dengue virus serotype 4, Brazil, 2010-2011.

scientific article published on November 2012

Phylogeography takes a relaxed random walk in continuous space and time

scientific article

Physician knowledge of herbal toxicities and adverse herb-drug interactions

scientific article

Pioglitazone Use and Risk of Bladder Cancer.

scientific article published in December 2015

Pomegranate ellagitannin-derived metabolites inhibit prostate cancer growth and localize to the mouse prostate gland

scientific article

Pomegranate juice and extracts provide similar levels of plasma and urinary ellagitannin metabolites in human subjects

scientific article

Pomegranate juice ellagitannin metabolites are present in human plasma and some persist in urine for up to 48 hours

scientific article published in October 2006

Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages

scientific article

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

scholarly article by Andrew Rambaut et al published 1 September 2018 in Systematic Biology

Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

scientific article

Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND)

scientific article published on 01 August 2020

Pseudo-likelihood based logistic regression for estimating COVID-19 infection and case fatality rates by gender, race, and age in California

scientific article published on 09 November 2020

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference ⬇️

scientific article

Recent advances in computational phylodynamics

scientific article published on 01 August 2018

Recombination between variants from genital tract and plasma: evolution of multidrug-resistant HIV type 1

scientific article

Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm

scientific article

Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin: observational and interventional studies in humans

scientific article published in July 2002

Relaxed Random Walks at Scale

scientific article published on 20 July 2020

Renin-angiotensin system blockers and susceptibility to COVID-19: a multinational open science cohort study

scientific article published on 12 June 2020

Renin-angiotensin system blockers and susceptibility to COVID-19: an international, open science, cohort analysis

scientific article published on 17 December 2020

Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome

scientific article published on January 2008

Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data

scientific article published in January 2010

Risk of angioedema associated with levetiracetam compared with phenytoin: Findings of the observational health data sciences and informatics research network

scientific article

Risk of depression, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multinational network cohort study

scientific article published on 25 December 2020

Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study

scientific article published on 21 August 2020

Robust empirical calibration of p-values using observational data

scientific article

SEX, LIES AND SELF-REPORTED COUNTS: BAYESIAN MIXTURE MODELS FOR HEAPING IN LONGITUDINAL COUNT DATA VIA BIRTH-DEATH PROCESSES. ⬇️

scientific article

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

scientific article

Safety of hydroxychloroquine, alone and in combination with azithromycin, in light of rapid wide-spread use for COVID-19: a multinational, network cohort and self-controlled case series study

scientific article published on 11 April 2020

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

scientific article published on 07 May 2020

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution

scientific article

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

scientific article

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

scientific article published on 11 April 2008

Spatial dynamics of human-origin H1 influenza A virus in North American swine

scientific article

Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS.

scientific article

Species-specific responses of Late Quaternary megafauna to climate and humans

scientific article (publication date: 2 November 2011)

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

scientific article

Stability-mediated epistasis constrains the evolution of an influenza protein

scientific article published in 2013

StepBrothers: inferring partially shared ancestries among recombinant viral sequences

scientific article published on 18 June 2008

Stochastic models for horizontal gene transfer: taking a random walk through tree space

scientific article

Symptom evolution following the emergence of maize streak virus

scientific article published on 15 January 2020

Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework

scientific article published in February 2003

Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework

scientific article

The emergence of SARS-CoV-2 in Europe and North America

scientific article

The emergence of SARS-CoV-2 in Europe and the US

scientific article published on 23 May 2020

The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia

scientific article published on 21 March 2017

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates

scientific article (publication date: April 2014)

The impact of drug and outcome prevalence on the feasibility and performance of analytical methods for a risk identification and analysis system

scientific article

The spread of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: a phylogeographic approach

scientific article published on 27 September 2013

Three roads diverged? Routes to phylogeographic inference ⬇️

scientific article published on September 20, 2010

Time squared: repeated measures on phylogenies

scientific article

Toward a quantitative understanding of viral phylogeography

scientific article published on 28 October 2011

Transition probabilities for general birth–death processes with applications in ecology, genetics, and evolution ⬇️

scientific article published on October 9, 2011

Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment

scientific article published on January 2009

U.S. PATTERNS OF DRUG UTILIZATION AND PRESCRIPTION FILLS FOR PROVEN CARDIOPROTECTIVE ANTI-HYPERGLYCEMIC AGENTS

scientific article published in 2022

Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures ⬇️

scientific article published on June 1, 2010

Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates

scientific article

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

scientific article

Unifying vertical and nonvertical evolution: a stochastic ARG-based framework

scientific article

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

scientific article

Untangling introductions and persistence in COVID-19 resurgence in Europe

scholarly article by Philippe Lemey published in 2021

Use of dialysis, tracheostomy, and extracorporeal membrane oxygenation among 240,392 patients hospitalized with COVID-19 in the United States

scientific article published on 27 November 2020

Use of electrochemical DNA biosensors for rapid molecular identification of uropathogens in clinical urine specimens

scientific article published in February 2006

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

scientific article

Validation of candidate serum ovarian cancer biomarkers for early detection

scientific article

Virus genomes reveal factors that spread and sustained the Ebola epidemic

scientific article (publication date: 12 April 2017)

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

article published in 2016

Wagner and Dollo: a stochastic duet by composing two parsimonious solos.

scientific article

Yellow fever virus maintenance in Trinidad and its dispersal throughout the Americas

scientific article

cBrother: relaxing parental tree assumptions for Bayesian recombination detection

scientific article published on 4 December 2006

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios

scientific article

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