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List of works by Andrew Kasarskis

A comprehensive transcript index of the human genome generated using microarrays and computational approaches

scientific article

A hybrid approach for the automated finishing of bacterial genomes

scientific article

A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

scientific article published on 22 December 2017

A systems approach identifies networks and genes linking sleep and stress: implications for neuropsychiatric disorders

scientific article published on 23 April 2015

A window into third-generation sequencing ⬇️

scientific article published on September 21, 2010

Altered sleep and affect in the neurotensin receptor 1 knockout mouse

scientific article

Analytical validation of whole exome and whole genome sequencing for clinical applications

scientific article

Assuring the quality of next-generation sequencing in clinical laboratory practice

scientific article

Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci

scientific article published on 23 June 2016

Characterizing and Overriding the Structural Mechanism of the Quizartinib-Resistant FLT3 "Gatekeeper" F691L Mutation with PLX3397

scientific article published on 6 April 2015

Child Health Promotion in Underserved Communities: The FAMILIA Trial

scientific article published on 01 April 2019

Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, blaKPC, in Klebsiella Species Is Elusive but Not Rare

scientific article

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193.

scientific article

Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131.

scientific article published on 06 September 2016

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

scholarly article by Daniela Michlmayr et al published 27 August 2018 in Molecular Systems Biology

Cross-species systems analysis identifies gene networks differentially altered by sleep loss and depression

scientific article published on 25 July 2018

Different Lifestyle Interventions in Adults From Underserved Communities: The FAMILIA Trial

scientific article published on 11 November 2019

Downregulation of exhausted cytotoxic T cells in gene expression networks of multisystem inflammatory syndrome in children

scientific article published on 11 August 2021

EXPLORING THE REPRODUCIBILITY OF PROBABILISTIC CAUSAL MOLECULAR NETWORK MODELS.

scientific article published on January 2016

Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records.

scientific article published on 6 November 2017

Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography

scientific article published on April 2017

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

scientific article published on 22 March 2016

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

scholarly article published 6 November 2015

Family-Based Approaches to Cardiovascular Health Promotion

scientific article published on April 2016

First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131.

scientific article published on 31 May 2016

Gene Network Dysregulation in Dorsolateral Prefrontal Cortex Neurons of Humans with Cocaine Use Disorder

scientific article

Genome Plasticity of -Defective Staphylococcus aureus during Clinical Infection

scholarly article published by Deena R Altman in 2018

Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient

scientific article

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing E. coli

High-dimensional CyTOF analysis of dengue virus-infected human DCs reveals distinct viral signatures

scientific article

How do students react to analyzing their own genomes in a whole-genome sequencing course?: outcomes of a longitudinal cohort study.

scientific article

How next-generation sequencing and multiscale data analysis will transform infectious disease management

scientific article

Identification of Genes and Networks Driving Cardiovascular and Metabolic Phenotypes in a Mouse F2 Intercross ⬇️

scientific article (publication date: 14 December 2010)

Identification of causal genes, networks, and transcriptional regulators of REM sleep and wake

scientific article

Impacts of incorporating personal genome sequencing into graduate genomics education: a longitudinal study over three course years

scientific article published on 30 January 2018

Informed decision-making among students analyzing their personal genomes on a whole genome sequencing course: a longitudinal cohort study

scientific article published on 30 December 2013

Institutional profile: translational pharmacogenomics at the Icahn School of Medicine at Mount Sinai

scientific article

Integrative Genomics Strategies to Elucidate the Complexity of Drug Response ⬇️

scientific article published on December 1, 2011

Introductions and early spread of SARS-CoV-2 in the New York City area

scientific article published on 29 May 2020

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

scientific article

Mapping the genetic architecture of gene expression in human liver ⬇️

scientific article

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

scientific article

Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project

scientific article

Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project.

scientific article published on 28 October 2015

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

scientific article published on 11 April 2016

Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

article

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

scientific article

PREDICTIVE MODELING OF HOSPITAL READMISSION RATES USING ELECTRONIC MEDICAL RECORD-WIDE MACHINE LEARNING: A CASE-STUDY USING MOUNT SINAI HEART FAILURE COHORT.

scientific article published on January 2016

Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining

scholarly article by Khader Shameer et al published 14 September 2018 in BMC Medical Informatics and Decision Making

Pharmacological validation of candidate causal sleep genes identified in an N2 cross

scientific article

Preparing the next generation of genomicists: a laboratory-style course in medical genomics

scientific article published on 12 August 2015

Psychological and behavioural impact of returning personal results from whole-genome sequencing: the HealthSeq project

scientific article

Rationale and Design of Family-Based Approach in a Minority Community Integrating Systems-Biology for Promotion of Health (FAMILIA).

scientific article published on 22 February 2017

Reply to Lesho.

scientific article

Resistance to Ceftazidime-Avibactam Is Due to Transposition of KPC in a Porin-Deficient Strain of Klebsiella pneumoniae with Increased Efflux Activity

scientific article published on 24 July 2017

Systematic genetic and genomic analysis of cytochrome P450 enzyme activities in human liver

scientific article

Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington's Disease

scientific article

Systems Medicine Approaches to Improving Understanding, Treatment, and Clinical Management of Neuroendocrine Prostate Cancer

scientific article

The Mce3R stress-resistance pathway is vulnerable to small-molecule targeting that improves tuberculosis drug activities

The Mce3R stress-resistance pathway is vulnerable to small-molecule targeting that improves tuberculosis drug activities

The genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia

scientific article published on 16 January 2018

The origin of the Haitian cholera outbreak strain

scientific article

Transcriptional and physiological adaptations in nucleus accumbens somatostatin interneurons that regulate behavioral responses to cocaine

scientific article published in Nature Communications

Uncovering the genetic landscape for multiple sleep-wake traits

scientific article

Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia ⬇️

scientific article published on April 15, 2012

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