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List of works by Dana Pe'er

A Single-cell Atlas of the Human Healthy Airways

scientific article published on 29 July 2020

Adult Human Glioblastomas Harbor Radial Glia-like Cells

scientific article published on 30 January 2020

Adult Human Glioblastomas Harbor Radial Glia-like Cells

scientific article published on 01 July 2020

An Immune Atlas of Clear Cell Renal Cell Carcinoma

scientific article

An integrated approach to uncover drivers of cancer.

scientific article

An integrated cell atlas of the lung in health and disease

Author Correction: Characterization of cell fate probabilities in single-cell data with Palantir

scientific article published on 01 October 2019

Bayesian network analysis of signaling networks: a primer

scientific article

Broadening horizons: holistic viewpoints from the Biology of Genomes

scientific article published on 25 July 2014

CD49b defines functionally mature Treg cells that survey skin and vascular tissues

article

Cancer cells deploy lipocalin-2 to collect limiting iron in leptomeningeal metastasis

scientific article published on 01 July 2020

CellRank for directed single-cell fate mapping

scientific article published on 13 January 2022

Characterization of cell fate probabilities in single-cell data with Palantir

scientific article published on 21 March 2019

Chromosomal instability drives metastasis through a cytosolic DNA response

scientific article published on 17 January 2018

Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation

scientific article published on 05 September 2019

Combination anti-CTLA-4 plus anti-PD-1 checkpoint blockade utilizes cellular mechanisms partially distinct from monotherapies

scientific article published on 21 October 2019

Concurrent RB1 and TP53 Alterations Define a Subset of EGFR-Mutant Lung Cancers at risk for Histologic Transformation and Inferior Clinical Outcomes

scientific article published on 19 June 2019

Context Sensitive Modeling of Cancer Drug Sensitivity

scientific article

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

scientific article

Detection of minimal residual disease in B lymphoblastic leukemia using viSNE.

scientific article published on 14 May 2015

Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data.

scientific article published in January 2016

Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade

scientific article published on 9 August 2017

Engineering γδT cells limits tonic signaling associated with chimeric antigen receptors

scientific article published on 10 September 2019

Environmental stresses disrupt telomere length homeostasis

scientific article

Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis

scientific article published on 11 May 2023

Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells

scientific article published on 01 May 2018

Frontiers in cancer immunotherapy-a symposium report

scientific article published on 13 November 2020

Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer's disease

scientific article published on 08 February 2021

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

scientific article

Genotype-environment interactions reveal causal pathways that mediate genetic effects on phenotype

scientific article

Harnessing gene expression to identify the genetic basis of drug resistance

scientific article published on 13 October 2009

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

scientific article

Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands

scientific article

Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification

scholarly article

Immune profiling of human tumors identifies CD73 as a combinatorial target in glioblastoma

scientific article published on 23 December 2019

Inference of modules associated to eQTLs ⬇️

scientific article published on March 24, 2012

Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.

scientific article published in May 2017

Integration of genomic data enables selective discovery of breast cancer drivers.

scientific article

Interferon α/β Enhances the Cytotoxic Response of MEK Inhibition in Melanoma

scientific article

JISTIC: identification of significant targets in cancer.

scientific article

L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer

scientific article published on 13 January 2020

Learning a prior on regulatory potential from eQTL data

scientific article

Learning signaling network structures with sparsely distributed data

scientific article

Lineage plasticity in cancer: a shared pathway of therapeutic resistance

scientific article published on 09 March 2020

MITI minimum information guidelines for highly multiplexed tissue images

scientific article published on 01 March 2022

Mapping differentiation under mixed culture conditions reveals a tunable continuum of T cell fates

scientific article

Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation.

scientific article published on 4 April 2017

Minreg: inferring an active regulator set.

scientific article

Modularity and interactions in the genetics of gene expression

scholarly article

Modulatory profiling identifies mechanisms of small molecule-induced cell death.

scientific article

NFkB disrupts tissue polarity in 3D by preventing integration of microenvironmental signals

scientific article

Natural Genetic Variation Reveals Key Features of Epigenetic and Transcriptional Memory in Virus-Specific CD8 T Cells

scientific article published on 23 April 2019

Negative Co-stimulation Constrains T Cell Differentiation by Imposing Boundaries on Possible Cell States

scientific article published on 26 March 2019

Normalization of mass cytometry data with bead standards

scientific article

Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model

scientific article published on 11 June 2020

PD-1 Blockade Expands Intratumoral Memory T Cells

scientific article published on 19 January 2016

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

scientific article

PhenoGraph and viSNE Facilitate the Identification of Abnormal T-Cell Populations in Routine Clinical Flow Cytometric Data

scientific article published on 02 September 2017

Principles and strategies for developing network models in cancer

scientific article

Publisher Correction: Lineage plasticity in cancer: a shared pathway of therapeutic resistance

scientific article published on 17 March 2020

RHPN2 drives mesenchymal transformation in malignant glioma by triggering RhoA activation

scientific article published on 17 June 2013

Radiotherapy orchestrates natural killer cell dependent antitumor immune responses through CXCL8

scientific article published on 23 March 2022

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

scientific article published on 28 June 2018

Regenerative lineages and immune-mediated pruning in lung cancer metastasis

scientific article published on 10 February 2020

Regenerative potential of prostate luminal cells revealed by single-cell analysis

scientific article published on 01 May 2020

Scalable microfluidics for single-cell RNA printing and sequencing

scientific article published on 6 June 2015

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

scientific article published on 28 June 2018

Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages

scientific article published on 01 October 2020

Single-cell mass cytometry of TCR signaling: amplification of small initial differences results in low ERK activation in NOD mice

scientific article

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

scientific article

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

scientific article published on April 2014

Systems biology. Conditional density-based analysis of T cell signaling in single-cell data

scientific article

The Human Cell Atlas

scientific article

The Human Cell Atlas

The Human Cell Atlas White Paper ⬇️

journal article from 'arXiv:1810.05192 [q-bio]' published in 2018

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

scientific article published on 01 April 2020

The emergent landscape of the mouse gut endoderm at single-cell resolution

scientific article published on 08 April 2019

The miR-424(322)/503 cluster orchestrates remodeling of the epithelium in the involuting mammary gland.

scientific article

Toward understanding and exploiting tumor heterogeneity

scientific article

Trajectories of cell-cycle progression from fixed cell populations

scientific article

Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity

scientific article published on 24 October 2019

Tumor Analyses Reveal Squamous Transformation and Off-Target Alterations As Early Resistance Mechanisms to First-line Osimertinib in EGFR-Mutant Lung Cancer

scientific article published on 07 January 2020

Using Bayesian networks to analyze expression data

Using systems and structure biology tools to dissect cellular phenotypes

scientific article published on 10 November 2011

Wishbone identifies bifurcating developmental trajectories from single-cell data

scientific article

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

scientific article

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