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List of works by Mark Stoneking

A Genome Scan to Detect Candidate Regions Influenced by Local Natural Selection in Human Populations ⬇️

scientific article published on April 25, 2003

A Highly Unstable Recent Mutation in Human mtDNA ⬇️

scientific article published on January 10, 2013

A Y-STR database of Iranian and Azerbaijanian minority populations

scientific article

A comprehensive survey of human Y-chromosomal microsatellites

scientific article

A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe

scientific article

A genomic history of Aboriginal Australia

scientific article (publication date: 21 September 2016)

A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals

scientific article

A new approach for detecting low-level mutations in next-generation sequence data ⬇️

scientific article published on May 23, 2012

A new approach for using genome scans to detect recent positive selection in the human genome

scientific article

A novel candidate region for genetic adaptation to high altitude in Andean populations

scientific article published on 11 May 2015

A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA.

scientific article

A whole genome amplification method to generate long fragments from low quantities of genomic DNA.

scientific article published in January 2002

Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number

scientific article

Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations

scientific article published on 29 January 2008

Ancient DNA from Guam and the peopling of the Pacific

scientific article published on 23 December 2020

Ancient DNA indicates human population shifts and admixture in northern and southern China

scientific article published on 14 May 2020

Ancient substructure in early mtDNA lineages of southern Africa

scientific article (publication date: 7 February 2013)

Ancient west Eurasian ancestry in southern and eastern Africa

scientific article published on 03 February 2014

Apparent intrachromosomal exchange on the human Y chromosome explained by population history.

scientific article published in April 2003

Archaic mitochondrial DNA inserts in modern day nuclear genomes

scientific article published on 26 December 2019

Authors' Reply

scientific article (published 2005-08-16)

Boundaries and clines in the West Eurasian Y-chromosome landscape: insights from the European part of Russia

scientific article

Bridging near and remote Oceania: mtDNA and NRY variation in the Solomon Islands

scientific article published on 18 July 2011

Bringing together linguistic and genetic evidence to test the Bantu expansion ⬇️

scientific article published on May 23, 2012

Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches

scientific article

Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia

scientific article published in Scientific Reports

Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai-Kadai languages

scientific article

Complete mtDNA genomes of Filipino ethnolinguistic groups: a melting pot of recent and ancient lineages in the Asia-Pacific region ⬇️

scientific article (publication date: February 2014)

Concomitant replacement of language and mtDNA in South Caspian populations of Iran

scientific article

Contrasting Paternal and Maternal Genetic Histories of Thai and Lao Populations.

scientific article published in July 2019

Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand.

scientific article

Contrasting paternal and maternal genetic histories of Thai and Lao populations: Supplementary Table

scholarly article published 3 January 2019

Correction to: Archaic mitochondrial DNA inserts in modern day nuclear genomes

scientific article published on 17 January 2020

Correction: Telford et al. Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches. 2020, , 1686

scientific article

Correlations in the population structure of music, genes and language.

scientific article published on 13 November 2013

Cultural Innovations Influence Patterns of Genetic Diversity in Northwestern Amazonia.

scientific article

Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand

scientific article published on 20 July 2020

Dating the age of admixture via wavelet transform analysis of genome-wide data

scientific article

Demographic history of Oceania inferred from genome-wide data

scientific article

Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania

scientific article

Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes

scientific article published on August 2010

Development of Y-chromosomal microsatellite markers for nonhuman primates

scientific article published in October 2004

Different evolutionary histories of the coagulation factor VII gene in human populations?

scientific article published on January 2010

Discerning the Origins of the Negritos, First Sundaland People: Deep Divergence and Archaic Admixture.

scientific article published on August 2017

Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes

scientific article

Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis

scientific article published on October 2008

Early Austronesians: into and out of Taiwan

scientific article (publication date: 6 March 2014)

Emotional Voice Processing: Investigating the Role of Genetic Variation in the Serotonin Transporter across Development ⬇️

scientific article published on July 8, 2013

Enclaves of genetic diversity resisted Inca impacts on population history

scientific article published on 12 December 2017

Erratum to: Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai-Kadai languages.

scientific article published on 21 March 2017

Erratum: Corrigendum: Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra

scientific article published in Nature Communications

Evaluating intra- and inter-individual variation in the human placental transcriptome

scientific article published on 19 March 2015

Evaluation of saliva as a source of human DNA for population and association studies.

scientific article published on 30 March 2006

Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia

article

Evolutionary history of continental southeast Asians: "early train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data

scientific article

Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches

scientific article published on 29 October 2020

Exploring deep-time relationships between cultural and genetic evolution in Northeast Asia: Supporting Information

article

Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity

scientific article published on 28 April 2020

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations

scientific article

Extreme mtDNA homogeneity in continental Asian populations

scientific article

Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa

scientific article

Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis

scientific article (publication date: August 2009)

Genetic and neural dissociation of individual responses to emotional expressions in human infants.

scientific article published on 30 July 2010

Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion ⬇️

scientific article published on March 6, 2012

Genetic evidence for the Mongolian ancestry of Kalmyks

scientific article

Genetic evidence for the demic diffusion of agriculture to India

scientific article published in May 2004

Genetic history of an archaic hominin group from Denisova Cave in Siberia

scientific article

Genetic perspectives on forager-farmer interaction in the Luangwa valley of Zambia

scientific article published in March 2010

Genetic structure and sex-biased gene flow in the history of southern African populations

article

Genetic structure and sex-biased gene flow in the history of southern African populations

scientific article published on 07 September 2018

Genetic variation and recent positive selection in worldwide human populations: evidence from nearly 1 million SNPs

scientific article

Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians

scientific article

Genome-wide data substantiate Holocene gene flow from India to Australia

scientific article

Genome-wide insights into the genetic history of human populations

scientific article

Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications

scientific article published on 14 June 2008

Genomic landscape of human diversity across Madagascar

scientific article published on 17 July 2017

Global diversity in the human salivary microbiome

scientific article

Global patterns of genetic diversity and signals of natural selection for human ADME genes ⬇️

scientific article published on November 16, 2010

Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci ⬇️

scientific article (publication date: October 2003)

High Diversity of the Saliva Microbiome in Batwa Pygmies ⬇️

scientific article published on August 16, 2011

High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping

scientific article published on 22 August 2008

High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia

scientific article published on 27 October 2017

High-throughput sequencing of complete human mtDNA genomes from the Philippines

scientific article

Human genetics of the Kula Ring: Y-chromosome and mitochondrial DNA variation in the Massim of Papua New Guinea

scientific article

Humans

scientific article published in May 2004

Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians

scientific article

Identifying genes underlying skin pigmentation differences among human populations

scientific article

Improvement in detection of minor alleles in next generation sequencing by base quality recalibration

scientific article

In search of polymorphic Alu insertions with restricted geographic distributions

scientific article

Increased constraints on MC4R during primate and human evolution

scientific article published on 15 November 2008

Independent origins of Indian caste and tribal paternal lineages

scientific article (publication date: 3 February 2004)

Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts

scientific article

Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra ⬇️

scientific article published on January 1, 2011

Maternal history of Oceania from complete mtDNA genomes: contrasting ancient diversity with recent homogenization due to the Austronesian expansion.

scientific article

Mating patterns amongst Siberian reindeer herders: inferences from mtDNA and Y-chromosomal analyses

scientific article

Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa

scientific article published on 3 January 2018

Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific

scientific article

Melanesian blond hair is caused by an amino acid change in TYRP1

scientific article

Melanesian origin of Polynesian Y-chromosomes

Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in Southern Africa

scientific article

Mitochondrial DNA analysis reveals diverse histories of tribal populations from India

scientific article published in March 2003

Mitochondrial DNA and human evolution

scientific article

Mitochondrial DNA and human evolution.

scientific article

Mitochondrial DNA evidence for admixed origins of central Siberian populations

scientific article

Molecular Evolution of Pediculus humanus and the Origin of Clothing

article

Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations

scientific article

Molecular evolution of Pediculus humanus and the origin of clothing

scientific article (publication date: 19 August 2003)

Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis

scientific article

MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania

scientific article published on 22 September 2011

MtDNA and Y-chromosome variation in Kurdish groups

scientific article

Multiple Deeply Divergent Denisovan Ancestries in Papuans

scientific article published on 11 April 2019

Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus

scientific article

New insights from Thailand into the maternal genetic history of Mainland Southeast Asia

scientific article published on 26 February 2018

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa

scientific article published on 2 December 2014

OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and Europeans.

scientific article published on 24 December 2011

Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for U.S. populations

scientific article published in May 2002

Papuan mitochondrial genomes and the settlement of Sahul

scientific article published on 01 June 2020

Parallel selection on TRPV6 in human populations

scientific article

Positive selection in East Asians for an EDAR allele that enhances NF-kappaB activation

scientific article

Recent developments in the genetic history of East Asia and Oceania

scientific article

Recent origin and cultural reversion of a hunter-gatherer group

scientific article published on 22 February 2005

Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness

scientific article

Reconstructing Austronesian population history in Island Southeast Asia

scientific article

Reconstructing Austronesian population history in Island Southeast Asia

article

Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea

scientific article

Refining the Y chromosome phylogeny with southern African sequences

scientific article

Reply to Denham and Donohue: Asian-Papuan genetic admixture is in excellent agreement with Austronesian dispersal in eastern Indonesia

scholarly article by Shuhua Xu & Mark Stoneking published 6 August 2012 in Proceedings of the National Academy of Sciences of the United States of America

Reply to Hedrick

scientific article

Reply to Price and Bird: No inconsistency between the date of gene flow from India and the Australian archaeological record

scientific article (publication date: 6 August 2013)

Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome

scientific article published on 02 August 2019

Signatures of Evolutionary Adaptation in Quantitative Trait Loci Influencing Trace Element Homeostasis in Liver

scientific article published on 17 November 2015

South Asia, the Andamanese, and the genetic evidence for an "early" human dispersal out of Africa

scientific article

Strong selection during the last millennium for African ancestry in the admixed population of Madagascar.

scientific article published on 2 March 2018

Testing hypotheses of language replacement in the Caucasus: evidence from the Y-chromosome

scientific article (publication date: March 2003)

Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans

scientific article

The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor

scientific article published in January 2018

The Complex Admixture History and Recent Southern Origins of Siberian Populations

scientific article published on 18 March 2016

The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast

scientific article published on 01 December 2019

The Gagauz, a linguistic enclave, are not a genetic isolate.

scientific article published on 28 November 2006

The Mediterranean Sea as a barrier to gene flow: evidence from variation in and around the F7 and F12 genomic regions

scientific article

The Y-chromosome landscape of the Philippines: extensive heterogeneity and varying genetic affinities of Negrito and non-Negrito groups

scientific article (publication date: February 2011)

The gateway from Near into Remote Oceania: new insights from genome-wide data

scientific article published on 2 January 2018

The genetic prehistory of southern Africa

scientific article

The genomic prehistory of peoples speaking Khoisan languages

scientific article published on 19 October 2020

The human genetic history of East Asia: weaving a complex tapestry.

scientific article published on February 2010

The impact of the Austronesian expansion: evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia

scientific article

The northeast Indian passageway: a barrier or corridor for human migrations?

scientific article

The paternal and maternal genetic history of Vietnamese populations

scientific article published on 11 December 2019

The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola

scientific article published on 22 November 2018

Tracing pastoralist migrations to southern Africa with lactase persistence alleles

scientific article

Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing

scientific article

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck

scientific article published on 25 February 2016

Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil

scientific article

Unraveling the complex maternal history of Southern African Khoisan populations

scientific article

Unraveling the human salivary microbiome diversity in Indian populations

scientific article published on 8 September 2017

Variation and signatures of selection on the human face

scientific article published in September 2014

Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn

scientific article published on 20 April 2021

Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry

scientific article

Y-STR haplotypes from eight south Indian groups based on five loci.

scientific article published in July 2004

Y-chromosomal STR haplotypes in Kalmyk population samples

scientific article published on 20 February 2007

Y-chromosomal evidence for a strong reduction in male population size of Yakuts

scientific article (publication date: February 2002)

Y-chromosomal variation in sub-Saharan Africa: insights into the history of Niger-Congo groups

scientific article

mtDNA and Y-chromosome variation in the Talysh of Iran and Azerbaijan

scientific article

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