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List of works by Andy Brass

A Blockchain-Based Dynamic Consent Architecture to Support Clinical Genomic Data Sharing (ConsentChain): Proof-of-Concept Study

scientific article published in 2021

A Cellular Automata Model for Helper T Cell Subset Polarization in Chronic and Acute Infection

article

A Little Semantic Web Goes a Long Way in Biology

article by K. Wolstencroft et al published 2005 in Lecture Notes in Computer Science

A RAPID algorithm for sequence database comparisons: application to the identification of vector contamination in the EMBL databases

scientific article published in February 1999

A cDNA encoding repeating units of the ABA-1 allergen of Ascaris

scientific article published in February 1993

A classification of tasks in bioinformatics

scientific article published on February 2001

A comprehensive genetic analysis of candidate genes regulating response to Trypanosoma congolense infection in mice

scientific article

A model-based analysis of microarray experimental error and normalisation

scientific article

A secondary structure model of the integrin alpha subunit N-terminal domain based on analysis of multiple alignments

article

A statistical analysis of murine incisional and excisional acute wound models

scientific article

A study of parallel molecular dynamics algorithms for N-body simulations on a transputer system

article

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

scientific article

A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis

scientific article (publication date: 2007)

A systematic strategy for the discovery of candidate genes responsible for phenotypic variation

scientific article

A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.

scientific article published on 20 November 2007

A systematic, data-driven approach to the combined analysis of microarray and QTL data

scientific article

Algorithm for computer simulations of flux-lattice melting in type-II superconductors

scientific article published in May 1989

An ontology for bioinformatics applications.

scientific article published on June 1999

Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage

scientific article

Annotation of environmental OMICS data: application to the transcriptomics domain

scientific article

Apoptosis signals in atopy and asthma measured with cDNA arrays

Bias in the reporting of sex and age in biomedical research on mouse models

scientific article published on 4 March 2016

Bioinformatics Education--A UK perspective

scientific article published on 01 February 2000

Cage and maternal effects on the bacterial communities of the murine gut

scientific article published on 10 May 2021

Claudin 13, a member of the claudin family regulated in mouse stress induced erythropoiesis

scientific article

Clinical chemistry of congenic mice with quantitative trait loci for predicted responses to Trypanosoma congolense infection

scientific article published on 13 July 2009

Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome

scientific article

Compositional Changes in the Gut Mucus Microbiota Precede the Onset of Colitis-Induced Inflammation

scientific article published on 11 May 2017

Computer simulations of flux pinning and flux flow in two dimensions

Computer simulations of the effect of glycosylation on the conformational freedom of peptides

scientific article published on 01 November 1991

Conceptual modelling of genomic information

scientific article

Constructing ontology-driven protein family databases.

scientific article

Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate

scholarly article

Correction for Fraser et al., Hypoxia-inducible myoglobin expression in nonmuscle tissues.

scholarly article

Current-voltage characteristics in a two-dimensional model for flux flow in type-II superconductors

scientific article

Data Journey Modelling: Predicting Risk for IT Developments

Deducing polymeric structure from aqueous molecular dynamics simulations of oligosaccharides: predictions from simulations of hyaluronan tetrasaccharides compared with hydrodynamic and X-ray fibre diffraction data

scientific article

Differential gene expression in a rat model of depression based on persistent differences in exploratory activity

scientific article published on 24 October 2009

Differential gene expression in mutant mice overexpressing or deficient in the serotonin transporter: a focus on urocortin 1.

scientific article published on 13 November 2010

Dynamic exchange between stabilized conformations predicted for hyaluronan tetrasaccharides: comparison of molecular dynamics simulations with available NMR data.

scientific article

Dynamical and critical behavior of a simple discrete model of the cellular immune system

article

Epitopes on the CB-11 peptide of type II collagen recognized by antibodies from patients with rheumatoid arthritis ⬇️

scholarly article by J Worthington et al published August 1993 in British Journal of Rheumatology

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference

scientific article published on 03 September 2014

Exploring Williams-Beuren syndrome using myGrid

scientific article

ExprAlign--the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles

scientific article

Extracting patterns of database and software usage from the bioinformatics literature

scientific article published on September 2014

Finite-size studies of particles obeying fractional statistics

scientific article published in August 1990

GIMS-a data warehouse for storage and analysis of genome sequence and functional data

GeVIR is a continuous gene-level metric that uses variant distribution patterns to prioritize disease candidate genes

scientific article published on 23 December 2019

Gene expression profiling in a mouse model for African trypanosomiasis

scientific article published on 26 October 2006

Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation

scientific article published on 26 February 2013

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection

scientific article

Genomics Approaches to Study the Biology Underlying Resistance toTrypanosomiasis – Some Unexpected Lessons

Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background

scientific article

Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production ⬇️

scientific article

Gut eosinophils and their impact on the mucus-resident microbiota

scientific article published on 17 September 2019

Hybrid Monte Carlo: An efficient algorithm for condensed matter simulation

Hypoxia-inducible myoglobin expression in nonmuscle tissues

scholarly article

INTERACT: an object oriented protein-protein interaction database.

scientific article

Identification of Antibody Epitopes within the CB-11 Peptide of Type II Collagen.: II. Computer Modelling Studies of Peptides and the Interpretation of Epitope Scanning Results

scientific article published on 01 January 1991

Identification of a key integrin-binding sequence in VCAM-1 homologous to the LDV active site in fibronectin

scientific article published in August 1994

Identification of an immunodominant B-cell epitope in bovine type II collagen and the production of antibodies to type II collagen by immunization with a synthetic peptide representing this epitope ⬇️

scientific article published on December 1, 1992

Identification of antibody epitopes within the CB-11 peptide of type II collagen. I: Detection of antibody binding sites by epitope scanning.

scientific article published in January 1991

Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite

scientific article

Identification of the complete coding sequence and genomic organization of the Treacher Collins syndrome gene

scientific article

Inhibition of glucose transport in human erythrocytes by ubiquinone Q0

scientific article published on 01 November 1991

Instabilities and Correlations of an Elastic Lattice in a Random Potential

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

scientific article (publication date: July 2003)

Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome

scientific article

Lattice deformations and plastic flow through bottlenecks in a two-dimensional model for flux pinning in type-II superconductors

scientific article

Lattice models of protein folding

scientific article published on 01 November 1995

Making sense of microarray data distributions

scientific article

Mechanisms controlling anaemia in Trypanosoma congolense infected mice

scientific article

Metaphyseal chondrodysplasia type Schmid mutations are predicted to occur in two distinct three-dimensional clusters within type X collagen NC1 domains that retain the ability to trimerize

scientific article

Models of flux pinning in the quasistatic limit

scientific article published on 01 January 1989

Molecular dynamics simulations of the two disaccharides of hyaluronan in aqueous solution

scientific article published in July 1997

Monte Carlo study of the specific heat and magnetization of a random three-dimensional cluster of Josephson coupled superconducting grains

scholarly article by Andy Brass & B. Mitrović published June 1991 in Physica C

Mutagenic and chemical modification of the ABA-1 allergen of the nematode Ascaris: consequences for structure and lipid binding properties

scientific article

Novel SNP Discovery in African Buffalo, Syncerus caffer, using high-throughput Sequencing

scientific article published on 7 November 2012

On the threshold pinning force in type II superconducting films

scholarly article by H. J. Jensen et al published February 1989 in Journal of Low Temperature Physics

PEDRo: a database for storing, searching and disseminating experimental proteomics data

scientific article

Pedro: a configurable data entry tool for XML.

scientific article

PhosphaBase: an ontology-driven database resource for protein phosphatases.

scientific article

Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity

scientific article published on 30 June 2009

Progressive lung cancer determined by expression profiling and transcriptional regulation

scientific article published on 28 March 2012

Protein classification using ontology classification.

scientific article

Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments

scientific article

Quality of methods reporting in animal models of colitis

scientific article published on June 2015

Recent developments in biological sequence databases

scientific article published on February 1998

Searching DNA databases for similarities to DNA sequences: when is a match significant?

scientific article published in January 1998

Secondary and tertiary structures involving chondroitin and chondroitin sulphates in solution, investigated by rotary shadowing/electron microscopy and computer simulation

scientific article

Secondary and tertiary structures of hyaluronan in aqueous solution, investigated by rotary shadowing-electron microscopy and computer simulation. Hyaluronan is a very efficient network-forming polymer

scientific article

Secondary structure of a fibrillin-1 eight-cysteine motif

scientific article

Self-assembly of rodlike particles in two dimensions: A simple model for collagen fibrillogenesis

article

Semantic similarity measures as tools for exploring the gene ontology

scientific article (publication date: 2003)

Simple physical model of collagen fibrillogenesis based on diffusion limited aggregation

scientific article published on 01 April 1995

Simulations of the onset of diffusion in a flux-line lattice in a random potential

article

Statistical mechanics of ontology based annotations ⬇️

Statistics and flux in two dimensions

scientific article published in Physical Review Letters

Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays

scientific article

Structure/function of the human glucocorticoid receptor: tyrosine 735 is important for transactivation

scientific article published on 01 November 1999

Superconductive pairing of fermions and semions in two dimensions

scientific article published in Physical Review Letters

TAMBIS: transparent access to multiple bioinformatics information sources

scientific article (publication date: February 2000)

TIGERi: modeling and visualizing the responses to perturbation of a transcription factor network

scientific article

Taming EHR data: using semantic similarity to reduce dimensionality

scientific article

The ABA-1 allergen of the parasitic nematode Ascaris suum: fatty acid and retinoid binding function and structural characterization.

scientific article

The Ov20 protein of the parasitic nematode Onchocerca volvulus. A structurally novel class of small helix-rich retinol-binding proteins.

scientific article published in November 1997

The conformations of hyaluronan in aqueous solution: comparison of theory and experiment

scientific article

The fibrillar collagens, collagen VIII, collagen X and the C1q complement proteins share a similar domain in their C-terminal non-collagenous regions

scientific article published in June 1992

The language of gene ontology: a Zipf’s law analysis ⬇️

scientific article published on June 7, 2012

The languages of health in general practice electronic patient records: a Zipf's law analysis

scientific article published on 10 January 2014

The quality of methods reporting in parasitology experiments

scientific article

Two and three dimensional FFTs on highly parallel computers

Ultradian cortisol pulsatility encodes a distinct, biologically important signal

scientific article

Vulnerability versus resilience to prenatal stress in male and female rats; implications from gene expression profiles in the hippocampus and frontal cortex.

scientific article published on 28 November 2012

Weak Classifiers Performance Measure in Handling Noisy Clinical Trial Data

article by Ezzatul Akmal Kamaru-Zaman et al published 2016 in Communications in Computer and Information Science

maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination

scientific article

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