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List of works by Wolfgang René Hess

A Feed-Forward Loop Consisting of the Response Regulator RpaB and the Small RNA PsrR1 Controls Light Acclimation of Photosystem I Gene Expression in the Cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 12 February 2016

A framework for the computational prediction and analysis of non-coding RNAs in microbial environmental populations and their experimental validation

scientific article published on 28 April 2020

A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria

scientific article published on 01 November 2018

A long antisense RNA in plant chloroplasts

scientific article published on 23 February 2010

A new chlorophyll d-containing cyanobacterium: evidence for niche adaptation in the genus Acaryochloris

scientific article published on 27 May 2010

A tightly inducible riboswitch system in Synechocystis sp. PCC 6803.

scientific article

Acclimation of Oxygenic Photosynthesis to Iron Starvation Is Controlled by the sRNA IsaR1.

scientific article

Adaptation and modification of three CRISPR loci in two closely related cyanobacteria

scientific article published on 27 March 2013

Alkane Biosynthesis Genes in Cyanobacteria and Their Transcriptional Organization

scientific article

An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease

scientific article

An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.

scientific article

Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq)

scientific article published on 01 April 2021

Approaches to study CRISPR RNA biogenesis and the key players involved

scientific article published on 17 July 2019

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program

scientific article published on 6 October 2016

Biochemical analysis of the Cas6-1 RNA endonuclease associated with the subtype I-D CRISPR-Cas system in Synechocystis sp. PCC 6803.

scientific article published on 8 March 2018

Biocomputational Analyses and Experimental Validation Identify the Regulon Controlled by the Redox-Responsive Transcription Factor RpaB

scientific article published on 28 April 2019

Biocomputational prediction of non-coding RNAs in model cyanobacteria

scientific article

CRISPR-Cas systems in multicellular cyanobacteria

scientific article published on 15 August 2018

CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein

scientific article published in 2013

CoVennTree: a new method for the comparative analysis of large datasets

scientific article

Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity.

scientific article published on 8 March 2018

Comparative analysis of the primary transcriptome of Synechocystis sp. PCC 6803.

scientific article published on 16 June 2014

Comparative genome analysis of the closely related Synechocystis strains PCC 6714 and PCC 6803

scientific article published on 9 January 2014

Comparative genomics boosts target prediction for bacterial small RNAs

scientific article

Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity

scientific article published on 17 April 2014

Complete genome determination and analysis of Acholeplasma oculi strain 19L, highlighting the loss of basic genetic features in the Acholeplasmataceae

scientific article published on 24 October 2014

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

article

Computational prediction of sRNAs and their targets in bacteria.

scientific article published on 13 January 2010

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

scientific article (publication date: July 2014)

Correction: The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus

scientific article published on 8 November 2008

Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments

scientific article

CyAbrB2 Contributes to the Transcriptional Regulation of Low CO2 Acclimation in Synechocystis sp. PCC 6803.

scientific article

Cyanobacterial genomics for ecology and biotechnology ⬇️

scientific article published on August 11, 2011

Cytosine N4-Methylation via M.Ssp6803II Is Involved in the Regulation of Transcription, Fine- Tuning of DNA Replication and DNA Repair in the Cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 5 June 2019

Daily expression pattern of protein-encoding genes and small noncoding RNAs in synechocystis sp. strain PCC 6803.

scientific article published on 13 June 2014

Dataset for metatranscriptome analysis of Prochlorococcus-rich marine picoplankton communities in the Gulf of Aqaba, Red Sea.

scientific article

Depletion of the FtsH1/3 Proteolytic Complex Suppresses the Nutrient Stress Response in the Cyanobacterium Synechocystis sp strain PCC 6803

scientific article published on 15 October 2019

Depth dependent metatranscriptomes of the marine pico-/nanoplanktonic communities in the Gulf of Aqaba/Eilat during seasonal deep mixing

scientific article published on 28 June 2014

Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium

scientific article published on 12 January 2012

Discovery of cyanophage genomes which contain mitochondrial DNA polymerase

scientific article published on 18 February 2011

Divergent methylation of CRISPR repeats and cas genes in a subtype I-D CRISPR-Cas-system

scientific article published on 01 July 2019

Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation.

scientific article published on 6 February 2014

Draft Genome Sequences of Nine Cyanobacterial Strains from Diverse Habitats.

scientific article published on 02 March 2017

Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120

scientific article published on 30 November 2011

Ecological genomics of marine picocyanobacteria

scientific article

Editorial: RNA in bacteria: biogenesis, regulatory mechanisms and functions

scientific article published on May 2015

Elements of the heterocyst-specific transcriptome unravelled by co-expression analysis in Nostoc sp. PCC 7120

scientific article published on 20 May 2019

Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti

scientific article

Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions

scientific article published on 17 February 2015

FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus

scientific article published on 11 December 2018

Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714

scientific article published on 31 July 2014

Genetic and metabolic advances in the engineering of cyanobacteria

scientific article published on 22 June 2019

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

scientific article

Genome of a giant bacteriophage from a decaying Trichodesmium bloom

scientific article published on 22 February 2017

Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina

scientific article

Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats

scientific article published on 27 January 2019

Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula.

scientific article

Glucosylglycerate: a secondary compatible solute common to marine cyanobacteria from nitrogen-poor environments

scientific article published on 4 September 2009

Hemin and magnesium-protoporphyrin IX induce global changes in gene expression in Chlamydomonas reinhardtii

scientific article

Heterocyst differentiation: from single mutants to global approaches.

scientific article published on 14 August 2012

Heterocyst-specific transcription of NsiR1, a non-coding RNA encoded in a tandem array of direct repeats in cyanobacteria

scientific article

Inactivation of the RNA helicase CrhR impacts a specific subset of the transcriptome in the cyanobacterium Synechocystis sp. PCC 6803

scientific article published on 24 June 2019

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315

article

Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803

scientific article

Insights into the physiology and ecology of the brackish-water-adapted Cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis

scientific article

Integrated Analysis of Engineered Carbon Limitation in a Quadruple CO2/HCO3- Uptake Mutant of Synechocystis sp. PCC 6803.

scientific article published on 15 September 2015

Integrated Transcriptomic and Metabolomic Characterization of the Low-Carbon Response Using an ndhR Mutant of Synechocystis sp. PCC 6803

article

Inverse regulation of light harvesting and photoprotection is mediated by a 3'-end-derived sRNA in cyanobacteria

scientific article published on 01 April 2021

Iron deprivation in Synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling

scientific article published on December 2012

Microbial metatranscriptomes from the thermally stratified Gulf of Aqaba/Eilat during summer

scientific article published on 19 December 2016

Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp. PCC 6803.

scientific article published on 15 October 2012

Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions

scientific article published on 19 January 2012

OxyS small RNA induces cell cycle arrest to allow DNA damage repair

scientific article published on 13 December 2017

Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803.

scientific article

RNA helicase-regulated processing of the Synechocystis rimO-crhR operon results in differential cistron expression and accumulation of two sRNAs

scientific article published on 24 March 2020

Regulatory RNAs in cyanobacteria: developmental decisions, stress responses and a plethora of chromosomally encoded cis-antisense RNAs.

scientific article published on 07 February 2011

Regulatory RNAs in photosynthetic cyanobacteria

scientific article

Riboregulators and the role of Hfq in photosynthetic bacteria

scientific article published on 10 February 2014

Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium.

scientific article

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

scientific article

Small RNAs of the halophilic archaeon Haloferax volcanii

scientific article published in February 2009

Small RNAs of theBradyrhizobium/Rhodopseudomonaslineage and their analysis

article

Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome

scientific article (publication date: 28 November 2016)

Specificities and functional coordination between the two Cas6 maturation endonucleases in Anabaena sp. PCC 7120 assign orphan CRISPR arrays to three groups

scientific article published on 26 May 2020

Strains of the toxic and bloom-forming Nodularia spumigena (cyanobacteria) can degrade methylphosphonate and release methane.

scientific article

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs

scientific article published on 5 September 2016

Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria ⬇️

scientific article published on May 31, 2011

Systems and synthetic biology for the biotechnological application of cyanobacteria

scientific article published on 23 August 2017

The Non-Coding RNA Ncr0700/PmgR1 is Required for Photomixotrophic Growth and the Regulation of Glycogen Accumulation in the Cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 20 July 2016

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

scientific article published on 05 June 2017

The Ssl2245-Sll1130 Toxin-Antitoxin System Mediates Heat-induced Programmed Cell Death in Synechocystis sp. PCC6803.

scientific article published on 19 January 2017

The Yfr2 ncRNA family, a group of abundant RNA molecules widely conserved in cyanobacteria

scientific article

The antisense RNA As1_flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply

scientific article published on August 2012

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus

scientific article

The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803.

scientific article published in October 2008

The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum

scientific article

The gene sml0013 of Synechocystis species strain PCC 6803 encodes for a novel subunit of the NAD(P)H oxidoreductase or complex I that is ubiquitously distributed among Cyanobacteria.

scientific article published on 2 October 2013

The hierarchy of transition metal homeostasis: iron controls manganese accumulation in a unicellular cyanobacterium.

scientific article published in December 2014

The high‐light‐induced protein <scp>SliP4</scp> binds to <scp>NDH1</scp> and photosystems facilitating cyclic electron transport and state transition in <i>Synechocystis</i> sp. PCC 6803

scientific article published in 2023

The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR-Cas subtype III-Bv system

scientific article published on 5 February 2018

The infinitely many genes model for the distributed genome of bacteria.

scientific article published on 21 February 2012

The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 22 February 2018

The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs

scientific article published on 28 November 2019

The primary transcriptome of the fast-growing cyanobacterium UTEX 2973

The primary transcriptome of the marine diazotroph Trichodesmium erythraeum IMS101.

scientific article published on 26 August 2014

The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7.

scientific article

The small regulatory RNA SyR1/PsrR1 controls photosynthetic functions in cyanobacteria

scientific article

The temperature-regulated DEAD-box RNA helicase CrhR interactome: autoregulation and photosynthesis-related transcripts

scientific article published on 09 September 2021

Toxin-antitoxin systems on the large defense plasmid pSYSA of Synechocystis sp. PCC 6803.

scientific article published on 15 January 2013

Transcriptomic and Proteomic Profiling of Anabaena sp. Strain 90 under Inorganic Phosphorus Stress

scientific article published on 29 May 2015

Transcriptomic response to prolonged ethanol production in the cyanobacterium Synechocystis sp. PCC6803

scientific article (publication date: 6 February 2014)

Transcriptomic responses of the marine cyanobacterium Prochlorococcus to viral lysis products

scientific article published on 21 January 2019

Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle

scientific article

Trimethylated homoserine functions as the major compatible solute in the globally significant oceanic cyanobacterium Trichodesmium.

scientific article published on 31 October 2016

Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region.

scientific article published on 13 May 2014

Type II Toxin-Antitoxin Systems in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 21 July 2016

Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria

scientific article published on 22 April 2015

Widespread Antisense Transcription in Prokaryotes

scientific article published on 01 July 2018

cis-antisense RNA, another level of gene regulation in bacteria.

scientific article published on June 2011

mRNA localization, reaction centre biogenesis and thylakoid membrane targeting in cyanobacteria

scientific article published on 07 September 2020

mdRNA-Seq analysis of marine microbial communities from the northern Red Sea.

scientific article published on 19 October 2016

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