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List of works by Jack H. Freed

250-GHz electron spin resonance studies of polarity gradients along the aliphatic chains in phospholipid membranes

scientific article

2D-ELDOR study of heterogeneity and domain structure changes in plasma membrane vesicles upon cross-linking of receptors.

scientific article

2D-ELDOR using full Sc− fitting and absorption lineshapes

scientific article published on 13 July 2007

A 236-GHz Fe EPR STUDY OF NANO-PARTICLES OF THE FERRO-MAGNETIC ROOM-TEMPERATURE SEMICONDUCTOR Sn(1-x)Fe(x)O(2)(x=0.005).

scientific article published on December 2009

A 2D-ELDOR study of the liquid ordered phase in multilamellar vesicle membranes.

scientific article

A Multifrequency ESR Study of the Complex Dynamics of Membranes

article

A Multifrequency Electron Spin Resonance Study of T4 Lysozyme Dynamics Using the Slowly Relaxing Local Structure Model

article

A New Wavelet Denoising Method for Experimental Time-Domain Signals: Pulsed Dipolar Electron Spin Resonance.

scientific article

A New Wavelet Denoising Method for Selecting Decomposition Levels and Noise Thresholds

scientific article published on 7 July 2016

A Protocol for Detecting and Scavenging Gas-phase Free Radicals in Mainstream Cigarette Smoke ⬇️

scientific article published on January 2, 2012

A facile approach for the in vitro assembly of multimeric membrane transport proteins.

scientific article

A multifrequency EPR study of Fe2+ and Mn2+ ions in a ZnSiF(6).6H2O single crystal at liquid-helium temperatures

scientific article

A multifrequency electron spin resonance study of T4 lysozyme dynamics

scientific article

A new Lanczos-based algorithm for simulating high-frequency two-dimensional electron spin resonance spectra.

scientific article

A novel view of domain flexibility in E. coli adenylate kinase based on structural mode-coupling (15)N NMR relaxation.

scientific article

A scissors mechanism for stimulation of SNARE-mediated lipid mixing by cholesterol

scholarly article

A structural mode-coupling approach to 15N NMR relaxation in proteins

scientific article published in April 2001

A theoretical approach to the analysis of arbitrary pulses in magnetic resonance

A theoretical approach to the analysis of arbitrary pulses in magnetic resonance (Chem. Phys. Letters 262 (1996) 17)

A variable temperature EPR study of Mn(2+)-doped NH(4)Cl(0.9)I(0.1) single crystal at 170 GHz: zero-field splitting parameter and its absolute sign

scientific article published on 01 June 2005

ADP ribosylation factor 6 binding to phosphatidylinositol 4,5-bisphosphate-containing vesicles creates defects in the bilayer structure: an electron spin resonance study

scientific article published in August 2001

Absorption lineshapes in two-dimensional electron spin resonance and the effects of slow motions in complex fluids

scientific article published in February 1997

Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes

scientific article

An electron nuclear double resonance and electron spin resonance study of semiquinones related to vitamins K and E-1a

scientific article published on 01 April 1970

An electron spin resonance study of interactions between gramicidin A' and phosphatidylcholine bilayers

scientific article

An electron spin resonance study of interactions between phosphatidylcholine and phosphatidylserine in oriented membranes

scientific article

An improved picture of methyl dynamics in proteins from slowly relaxing local structure analysis of 2H spin relaxation

scientific article

Architecture of the Soluble Receptor Aer2 Indicates an In-Line Mechanism for PAS and HAMP Domain Signaling

scientific article

Assembly states of FliM and FliG within the flagellar switch complex

scientific article

Backbone Dynamics of Deoxy and Carbonmonoxy Hemoglobin by NMR/SRLS ⬇️

scientific article published on December 16, 2010

Bacterial Energy Sensor Aer Modulates the Activity of the Chemotaxis Kinase CheA Based on the Redox State of the Flavin Cofactor

scientific article published on November 2016

Bacterial chemoreceptor dynamics correlate with activity state and are coupled over long distances

scientific article

Benchmark Test and Guidelines for DEER/PELDOR Experiments on Nitroxide-Labeled Biomolecules

scientific article published in 2021

Berry's geometrical phases in ESR in the presence of a stochastic process.

scientific article

Ca2+ ions promote fusion of Middle East Respiratory Syndrome coronavirus with host cells and increase infectivity

scientific article published on 20 December 2019

Ca2+ ions promote fusion of Middle East respiratory syndrome coronavirus with host cells and increase infectivity

scientific article published on 15 April 2020

Calcium Ions Directly Interact with the Ebola Virus Fusion Peptide To Promote Structure-Function Changes That Enhance Infection

scientific article published on 10 December 2019

Calculating Slow Motional Magnetic Resonance Spectra

Calculation of Double-Quantum-Coherence Two-dimensional Spectra: Distance Measurements and Orientational Correlations

scientific article

Channel and Nonchannel Forms of Spin-Labeled Gramicidin in Membranes and Their Equilibria ⬇️

scientific article published on December 13, 2010

Characterizing the structure and dynamics of folded oligomers: Pulsed ESR studies of peptoid helices

scientific article

Coexisting domains in the plasma membranes of live cells characterized by spin-label ESR spectroscopy

scientific article

Cofactors are essential constituents of stable and seeding-active tau fibrils

scientific article published on 11 December 2018

Collective fluctuations in ordered fluids investigated by two-dimensional electron-electron double resonance spectroscopy

scientific article published in November 2006

Comment on "Distinct Populations in Spin-Label EPR Spectra from Nitroxides"

scientific article published on 28 February 2019

Comment on "The physical basis of model-free analysis of NMR relaxation data from proteins and complex fluids" [J. Chem. Phys. 131, 224507 (2009)].

scientific article

Conformational Response of Influenza A M2 Transmembrane Domain to Amantadine Drug Binding at Low pH (pH 5.5).

scientific article published on 29 July 2016

Conformational distributions and hydrogen bonding in gel and frozen lipid bilayers: a high frequency spin-label ESR study

scientific article

Conformational dynamics in extended RGD-containing peptides

scientific article published on 29 May 2020

Conformational ensemble of the sodium-coupled aspartate transporter

scientific article published on 20 January 2013

Conformational motion of the ABC transporter MsbA induced by ATP hydrolysis

scientific article

Copper-based pulsed dipolar ESR spectroscopy as a probe of protein conformation linked to disease states

scientific article

Determination of the oligomeric states of human and rat monoamine oxidases in the outer mitochondrial membrane and octyl beta-D-glucopyranoside micelles using pulsed dipolar electron spin resonance spectroscopy

scientific journal article

Determination of tie-line fields for coexisting lipid phases: an ESR study

scientific article published on March 2009

Diffusion coefficients in anisotropic fluids by ESR imaging of concentration profiles

Diphthamide biosynthesis requires an organic radical generated by an iron-sulphur enzyme

scientific article

Domain flexibility in ligand-free and inhibitor-bound Escherichia coli adenylate kinase based on a mode-coupling analysis of 15N spin relaxation

scientific article

Dph3 is an electron donor for Dph1-Dph2 in the first step of eukaryotic diphthamide biosynthesis.

scientific article published on 22 January 2014

Dynamic Molecular Structure and Phase Diagram of DPPC−Cholesterol Binary Mixtures: A 2D-ELDOR Study

scientific article published on 31 August 2007

Dynamic imaging of lateral diffusion by electron spin resonance and study of rotational dynamics in model membranes. Effect of cholesterol

scientific article

Dynamic molecular structure of DPPC-DLPC-cholesterol ternary lipid system by spin-label electron spin resonance

scientific article

Dynamic nuclear polarization of membrane proteins: covalently bound spin-labels at protein-protein interfaces

scientific article published on April 2015

Dynamics and ordering in mixed model membranes of dimyristoylphosphatidylcholine and dimyristoylphosphatidylserine: a 250-GHz electron spin resonance study using cholestane

scientific article

Dynamics and ordering of lipid spin-labels along the coexistence curve of two membrane phases: An ESR study ⬇️

scientific article published on April 1, 2012

Dynamics of phosphatidylcholine-cholesterol mixed model membranes in the liquid crystalline state

scientific article

Dynamics of the nitroxide side chain in spin-labeled proteins

scientific article published on December 2006

EPR distance measurements support a model for long-range radical initiation in E. coli ribonucleotide reductase.

scientific article

ESR Microscopy and Nanoscopy with “Induction” Detection

ESR Microscopy for Biological and Biomedical Applications ⬇️

scientific article published on August 1, 2011

ESR studies of spin-labeled membranes aligned by isopotential spin-dry ultracentrifugation: lipid-protein interactions

scientific article

Effect of freezing conditions on distances and their distributions derived from Double Electron Electron Resonance (DEER): A study of doubly-spin-labeled T4 lysozyme ⬇️

scientific article published on January 24, 2012

Effects of finite pulse width on two-dimensional Fourier transform electron spin resonance

scientific article published on 16 September 2005

Electron Tunneling in Lithium–Ammonia Solutions Probed by Frequency-Dependent Electron Spin Relaxation Studies ⬇️

scientific article published on May 24, 2012

Electron spin resonance and electron-spin-echo study of oriented multilayers of L alpha-dipalmitoylphosphatidylcholine water systems

scientific article

Electron spin resonance characterization of liquid ordered phase of detergent-resistant membranes from RBL-2H3 cells

scientific article

Electron spin resonance in studies of membranes and proteins.

scientific article

Electron spin resonance microscopy applied to the study of controlled drug release

scientific article published on 7 February 2006

Electron-spin resonance study of aggregation of gramicidin in dipalmitoylphosphatidylcholine bilayers and hydrophobic mismatch

scientific article

End-to-end correlation for a C-12 hydrocarbon chain

scientific article

Engineered chemotaxis core signaling units indicate a constrained kinase-off state

scientific article published on 10 November 2020

Enrichment of endoplasmic reticulum with cholesterol inhibits sarcoplasmic-endoplasmic reticulum calcium ATPase-2b activity in parallel with increased order of membrane lipids: implications for depletion of endoplasmic reticulum calcium stores and a

scientific article published on 23 June 2004

Field gradient ESR and molecular diffusion in model membranes

scientific article published on January 1994

Focus: Two-dimensional electron-electron double resonance and molecular motions: The challenge of higher frequencies

scientific article published on June 2015

Fusion peptide from influenza hemagglutinin increases membrane surface order: an electron-spin resonance study

scientific article published on June 2009

HAMP domain conformers that propagate opposite signals in bacterial chemoreceptors

scientific article

HIV gp41 fusion peptide increases membrane ordering in a cholesterol-dependent fashion

scientific article published on January 2014

High resolution electron spin resonance microscopy ⬇️

scientific article published on November 1, 2003

High-field ESR on aligned membranes: a simple method to record spectra from different membrane orientations in the magnetic field

scientific article published on 20 January 2006

High-frequency ESR at ACERT.

scientific article

High-yield production in E. coli and characterization of full-length functional p13II protein from human T-cell leukemia virus type 1

scientific article published on 29 April 2020

Hydration, structure, and molecular interactions in the headgroup region of dioleoylphosphatidylcholine bilayers: an electron spin resonance study

scientific article

Improved Sensitivity for Long-Distance Measurements in Biomolecules: Five-Pulse Double Electron-Electron Resonance.

scientific article published on 19 December 2012

Influenza Fusion Peptide and Transmembrane Domain Interaction Induces Distinct Domains in Lipid Bilayers

scientific article

Insights into histidine kinase activation mechanisms from the monomeric blue light sensor EL346

scientific article published on 26 February 2019

Inter-helix distances in lysophospholipid micelle-bound alpha-synuclein from pulsed ESR measurements

scientific article published on 01 August 2006

Interaction of Spin-Labeled Lipid Membranes with Transition Metal Ions

scientific article published on 13 October 2015

Joint analysis of ESR lineshapes and 1H NMRD profiles of DOTA-Gd derivatives by means of the slow motion theory

scientific article

Key features of an Hsp70 chaperone allosteric landscape revealed by ion-mobility native mass spectrometry and double electron-electron resonance

scientific article

Lipid-Gramicidin Interactions: Dynamic Structure of the Boundary Lipid by 2D-ELDOR ⬇️

scientific article published on May 1, 2003

Lipid-gramicidin interactions using two-dimensional Fourier-transform electron spin resonance ⬇️

scientific article published on October 1, 1997

Local Ordering at Mobile Sites in Proteins from Nuclear Magnetic Resonance Relaxation: The Role of Site Symmetry

scientific article

Local ordering and dynamics in anisotropic media by magnetic resonance: from liquid crystals to proteins

scientific article published on 01 July 2019

Locating a lipid at the portal to the lipoxygenase active site

scientific article

MOMD Analysis of NMR Line Shapes from Aβ-Amyloid Fibrils: A New Tool for Characterizing Molecular Environments in Protein Aggregates

scientific article published on 6 April 2018

Magnetic-field-dependent microwave properties of YBa2Cu3Ox single crystals

scientific article published on 01 March 1989

Maximum entropy: a complement to Tikhonov regularization for determination of pair distance distributions by pulsed ESR

scientific article published on 30 August 2005

Measurement of large distances in biomolecules using double-quantum filtered refocused electron spin-echoes

scientific article

Measuring distances by pulsed dipolar ESR spectroscopy: spin-labeled histidine kinases.

scientific article

Mechanism of influenza A M2 transmembrane domain assembly in lipid membranes

scientific article published on 20 July 2015

Mechanistic Insight into the Photocontrolled Cationic Polymerization of Vinyl Ethers.

scientific article

Mechanistic understanding of Pyrococcus horikoshiiDph2, a [4Fe–4S] enzyme required for diphthamidebiosynthesis ⬇️

scientific article published on October 8, 2010

Membrane-bound alpha-synuclein forms an extended helix: long-distance pulsed ESR measurements using vesicles, bicelles, and rodlike micelles

scientific article published on 6 September 2008

Methyl dynamics in proteins from NMR slowly relaxing local structure spin relaxation analysis: A new perspective

scientific article published on 01 October 2006

Methyl dynamics of a Ca2+-calmodulin-peptide complex from NMR/SRLS.

scientific article published on 17 December 2010

Microscopic versus macroscopic diffusion in model membranes by electron spin resonance spectral-spatial imaging

scientific article

Microsecond Exchange Processes Studied by Two-Dimensional ESR at 95 GHz

scientific article published on 11 December 2020

Microsecond dynamics in proteins by two-dimensional ESR: Predictions

scientific article published on 01 June 2020

Microwave study of YBa2Cu

scientific article published on 01 September 1988

Modeling the effects of structure and dynamics of the nitroxide side chain on the ESR spectra of spin-labeled proteins.

scientific article

Molecular-scale force measurement in a coiled-coil peptide dimer by electron spin resonance.

scientific article

Multifrequency ESR study of spin-labeled molecules in inclusion compounds with cyclodextrins

scientific article published on 30 June 2009

Multifrequency Two-Dimensional Fourier Transform ESR: An X/Ku–Band Spectrometer ⬇️

scientific article published on August 1, 1997

Multifrequency electron spin resonance spectra of a spin-labeled protein calculated from molecular dynamics simulations

scientific article published on February 2009

Multifrequency electron spin resonance study of the dynamics of spin labeled T4 lysozyme

scientific article

New method for determining tie-lines in coexisting membrane phases using spin-label ESR.

scientific article published in February 2005

New technologies in electron spin resonance

scientific article

Nonlinear-Least-Squares Analysis of Slow-Motion EPR Spectra in One and Two Dimensions Using a Modified Levenberg–Marquardt Algorithm

scientific article

Nuclear-spin waves in polarized atomic hydrogen gas: Temperature and density dependence in the hydrodynamic and Knudsen regimes

scientific article published on 01 October 1989

Open and Closed Form of Maltose Binding Protein in Its Native and Molten Globule State As Studied by Electron Paramagnetic Resonance Spectroscopy

scientific article published on 13 September 2018

Ordered and disordered phases coexist in plasma membrane vesicles of RBL-2H3 mast cells. An ESR study

scientific article

Organometallic Complex Formed by an Unconventional Radical S-Adenosylmethionine Enzyme.

scientific article published on 28 July 2016

Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.

scientific article published in March 2018

Oxygen effects on the EPR signals from wood charcoals: experimental results and the development of a model

scientific article published on 31 October 2007

Parametrization, molecular dynamics simulation, and calculation of electron spin resonance spectra of a nitroxide spin label on a polyalanine alpha-helix

scientific article published on 16 April 2008

Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective

scientific article published on 10 September 2018

Polarity Profiles in Oriented and Dispersed Phosphatidylcholine Bilayers Are Different: An Electron Spin Resonance Study ⬇️

scientific article published on February 1, 1998

Preformed Soluble Chemoreceptor Trimers That Mimic Cellular Assembly States and Activate CheA Autophosphorylation

scientific article published on 28 May 2015

Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C-D and C-CD3 Probes

scientific article published on 24 September 2015

Protein dynamics from NMR: the slowly relaxing local structure analysis compared with model-free analysis

scientific article

Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective

scientific article published on 3 February 2015

Protein dynamics in the solid-state from 2H NMR lineshape analysis. III. MOMD in the presence of Magic Angle Spinning

scientific article published on 21 November 2017

Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme.

scientific article

Publisher's Note: “Joint analysis of ESR lineshapes and 1H NMRD profiles of DOTA-Gd derivatives by means of the slow motion theory” []. ⬇️

scientific article

Pulse dipolar ESR of doubly labeled mini TAR DNA and its annealing to mini TAR RNA

scientific article

Pulsed Dipolar Spectroscopy Reveals That Tyrosyl Radicals Are Generated in Both Monomers of the Cyclooxygenase-2 Dimer

scientific article

Pulsed ESR dipolar spectroscopy for distance measurements in immobilized spin labeled proteins in liquid solution

scientific article

Rapid determination of translational diffusion coefficients using ESR imaging

Rapid singular value decomposition for time-domain analysis of magnetic resonance signals by use of the lanczos algorithm

Reconstruction of the chemotaxis receptor-kinase assembly

scientific article (publication date: May 2006)

Rigid body refinement of protein complexes with long-range distance restraints from pulsed dipolar ESR.

scientific article published in January 2007

Room Temperature Electron Spin Resonance Distance Measurements in T4 Lysozyme using Trityl-Based Spin Labels

SARS-CoV-2 Fusion Peptide has a Greater Membrane Perturbating Effect than SARS-CoV with Highly Specific Dependence on Ca

scientific article

Scanned-probe detection of electron spin resonance from a nitroxide spin probe

scientific article

Self-Association of the Histidine Kinase CheA as Studied by Pulsed Dipolar ESR Spectroscopy ⬇️

scientific article published on May 2, 2012

Signal transduction in light-oxygen-voltage receptors lacking the adduct-forming cysteine residue.

scientific article published on 9 December 2015

Signature of an aggregation-prone conformation of tau.

scientific article published on 17 March 2017

Simulating electron spin resonance spectra of nitroxide spin labels from molecular dynamics and stochastic trajectories

scientific article published on April 2008

Singular Value Decomposition Method To Determine Distance Distributions in Pulsed Dipolar Electron Spin Resonance: II. Estimating Uncertainty

scientific article published on 24 December 2018

Singular Value Decomposition Method to Determine Distance Distributions in Pulsed Dipolar Electron Spin Resonance

scientific article published on 3 November 2017

Site-Specific Incorporation of a Cu Spin Label into Proteins for Measuring Distances by Pulsed Dipolar Electron Spin Resonance Spectroscopy

scientific article published on 03 October 2018

Spin Relaxation and Motional Dynamics

article

Spin-labeled gramicidin a: channel formation and dissociation

scientific article

Stability and Conformation of a Chemoreceptor HAMP Domain Chimera Correlates with Signaling Properties

scientific article published on April 2017

Structural Dynamics by NMR in the Solid-State: The Unified MOMD Perspective Applied to Organic Frameworks with Interlocked Molecules

scientific article published on 25 June 2020

Structural basis for activation, assembly and membrane binding of ESCRT-III Snf7 filaments

scientific article

Structural basis for membrane anchoring and fusion regulation of the herpes simplex virus fusogen gB

scientific article published on 04 May 2018

Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach

scientific article

Structure of the ternary complex formed by a chemotaxis receptor signaling domain, the CheA histidine kinase, and the coupling protein CheW as determined by pulsed dipolar ESR spectroscopy

scientific article

Structure-Function Studies Link Class II Viral Fusogens with the Ancestral Gamete Fusion Protein HAP2.

scientific article

Studies on lipid membranes by two-dimensional Fourier transform ESR: Enhancement of resolution to ordering and dynamics

scientific article

Study of paramagnetic defect centers in as-grown and annealed TiO2 anatase and rutile nanoparticles by a variable-temperature X-band and high-frequency (236 GHz) EPR.

scientific article published on March 2016

Substrate-Dependent Cleavage Site Selection by Unconventional Radical S-Adenosylmethionine Enzymes in Diphthamide Biosynthesis

scientific article published on 6 April 2017

Synthesis and Solution-Phase Characterization of Sulfonated Oligothioetheramides.

scientific article published in January 2017

Tau binds to lipid membrane surfaces via short amphipathic helices located in its microtubule-binding repeats

scientific article

The Effects of Spin in Gases

The Interaction between Influenza HA Fusion Peptide and Transmembrane Domain Affects Membrane Structure

scientific article

The SARS-CoV Fusion Peptide Forms an Extended Bipartite Fusion Platform that Perturbs Membrane Order in a Calcium-Dependent Manner

scientific article published on 19 October 2017

The asymmetric function of Dph1-Dph2 heterodimer in diphthamide biosynthesis

scientific article published on 28 August 2019

The determination of pair distance distributions by pulsed ESR using Tikhonov regularization

scientific article published in February 2005

The internal dynamics of mini c TAR DNA probed by electron paramagnetic resonance of nitroxide spin-labels at the lower stem, the loop, and the bulge.

scientific article published on 18 October 2012

The lipid-binding domain of wild type and mutant alpha-synuclein: compactness and interconversion between the broken and extended helix forms

scientific article

Theory for dynamic lineshapes of strongly correlated two-spin systems

Thermodynamics and dynamics of phosphatidylcholine-cholesterol mixed model membranes in the liquid crystalline state: effects of water

scientific article

Thermodynamics of phosphatidylcholine-cholesterol mixed model membranes in the liquid crystalline state studied by the orientational order parameter

scientific article

Transport domain unlocking sets the uptake rate of an aspartate transporter.

scientific article

Two Conserved Residues Are Important for Inducing Highly Ordered Membrane Domains by the Transmembrane Domain of Influenza Hemagglutinin ⬇️

scientific article published on January 5, 2011

Unique Structural Features of Membrane-Bound C-Terminal Domain Motifs Modulate Complexin Inhibitory Function

scientific article published on 24 May 2017

Using Markov models to simulate electron spin resonance spectra from molecular dynamics trajectories

scientific article published on 12 August 2008

Variable Coupling Scheme for High Frequency Electron Spin Resonance Resonators Using Asymmetric Meshes

scientific article published on January 2010

Variable-frequency EPR study of Mn(2+)-doped NH(4)Cl(0.9)I(0.1) single crystal at 9.6, 36, and 249.9 GHz: structural phase transition

scientific article published on 01 February 2003

Weak-link structure in YBa2Cu3O7 single crystals: A microwave study

scientific article published on 01 August 1990

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