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List of works by Yoshihide Hayashizaki

A RecA-mediated exon profiling method

scientific article published on 8 August 2006

A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny

scientific article published on 16 November 2016

A code for transcription initiation in mammalian genomes

scientific article

A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells.

scientific article published on 29 October 2013

A comprehensive search for HNF-3α-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis ⬇️

scientific article published on October 17, 2003

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

scientific article

A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs

scientific article

A direct repeat sequence at the Rasgrf1 locus and imprinted expression

scientific article published in January 1999

A genetic linkage map of the MSM Japanese wild mouse strain with restriction landmark genomic scanning (RLGS).

scientific article published in May 2000

A genetic linkage map of the Syrian hamster and localization of cardiomyopathy locus on chromosome 9qa2.1-b1 using RLGS spot-mapping

scientific article published on 01 May 1996

A genetic linkage map of the mouse using restriction landmark genomic scanning (RLGS)

scientific article

A genome-wide and nonredundant mouse transcription factor database

scientific article published on September 2004

A method for similarity search of genomic positional expression using CAGE.

scientific article published on 28 April 2006

A methylation imprint mark in the mouse imprinted gene Grf1/Cdc25Mm locus shares a common feature with the U2afbp-rs gene: an association with a short tandem repeat and a hypermethylated region

scientific article published on April 1998

A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes

scientific article (publication date: 10 October 2006)

A new approach to the distribution and storage of genetic resources

scientific article published in March 2004

A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription

article

A novel replication-independent histone H2a gene in mouse

scientific article

A predictive computational framework for direct reprogramming between human cell types

scientific article

A promoter-level mammalian expression atlas

scientific article

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

scientific article

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

article

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus) ⬇️

scientific article published on October 11, 2010

A simple physical model predicts small exon length variations

scientific article

A single gel analysis of 575 dominant and codominant restriction landmark genomic scanning loci in mice interspecific backcross progeny

scientific article published on 01 February 1995

A spot cloning method for restriction landmark genomic scanning

scientific article published in February 1995

A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation

scientific article published on 10 July 2014

Absence of imprinting in U2AFBPL, a human homologue of the imprinted mouse gene U2afbp-rs

scientific article

Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags

scientific article published in February 2004

Abstract 2897: Recurrent transcriptome alterations across multiple cancer types

Accessibility to tissue-specific genes from methylation profiles of mouse brain genomic DNA.

scientific article published on February 1995

Adipose tissue microRNAs as regulators of CCL2 production in human obesity

scientific article

Alternate transcription of the Toll-like receptor signaling cascade

scientific article published on 17 February 2006

Amino acid translation program for full-length cDNA sequences with frameshift errors.

scientific article

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An Oocyte-Specific Methylation Imprint Center in the MouseU2afbp-rs/U2af1-rs1Gene Marks the Establishment of Allele-Specific Methylation during Preimplantation Development ⬇️

scientific article published on September 1, 1997

An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA

scientific article

An atlas of active enhancers across human cell types and tissues

scientific article

An atlas of combinatorial transcriptional regulation in mouse and man

scientific article

An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article

An automatic image analysis system for RLGS films ⬇️

scientific article published on August 1, 1998

An epigenetic aberration increased in intergenic regions of cloned mice

scientific article published on 29 October 2008

An expanded system of restriction landmark genomic scanning (RLGS Ver. 1.8)

scientific article published on 01 February 1995

An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article

Analysis of gene expression in the developing mouse retina

scholarly article

Analysis of gene expression involved in brain metastasis from breast cancer using cDNA microarray

scientific article published on January 2002

Analysis of gene expression profiles in fatal hepatic failure after hepatectomy in mice.

scientific article published on 16 March 2010

Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation

scientific article published on 26 March 2014

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease.

scientific article

Analysis of the mouse transcriptome for genes involved in the function of the nervous system.

scientific article

Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer

scientific article published on 3 May 2013

Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases

scientific article published on 04 January 2019

Antisense transcription in the mammalian transcriptome

scientific article (publication date: 2 September 2005)

Antisense transcripts with FANTOM2 clone set and their implications for gene regulation

scientific article

Antisense transcripts with rice full-length cDNAs

scientific article

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

scientific article published on 14 December 2015

Application of the RLGS Method to Large-Size Genomes Using a Restriction Trapper ⬇️

scientific article published on January 1, 1994

Aptamer-dependent full-length cDNA synthesis by overlap extension PCR.

scientific article published on July 2004

Arabidopsis encyclopedia using full-length cDNAs and its application

scientific article published in 2001

Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns

scientific article

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scholarly article published in Scientific Data

Automated filtration-based high-throughput plasmid preparation system

scientific article published on May 1999

Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer

scientific article

Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis

scientific article

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

scientific article

Beyond the FANTOM4.

scientific article

Bone Marrow Adipocytes Facilitate Fatty Acid Oxidation Activating AMPK and a Transcriptional Network Supporting Survival of Acute Monocytic Leukemia Cells

scientific article published on 20 January 2017

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

scientific article

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

scientific article

CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts.

scientific article

CAGE: cap analysis of gene expression

scientific article published in March 2006

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

scientific article

CC Chemokine Ligand 2 and Leukemia Inhibitory Factor Cooperatively Promote Pluripotency in Mouse Induced Pluripotent Cells ⬇️

scientific article published on August 1, 2011

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

scientific article

CDK1 dependent phosphorylation of hTERT contributes to cancer progression

scientific article published on 25 March 2020

CDS annotation in full-length cDNA sequence

scientific article

CORRIGENDUM: CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes.

scientific article published on 19 September 2014

Cancer research with non-coding RNA.

scientific article published on December 2006

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

scientific article

Capturing drug responses by quantitative promoter activity profiling

scientific article

Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: Causes of signal variation and false positive signals

Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones

scientific article

Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12.

scientific article published on May 2003

Characterization of the promoter of the murine mac25 gene

scientific article

Chemosensitivity prediction in esophageal squamous cell carcinoma: novel marker genes and efficacy-prediction formulae using their expression data.

scientific article

Chromatin conformation signatures of cellular differentiation

scientific article

Clinical SNP detection by the SmartAmp method

scientific article

Clinical screening assay for EGFR exon 19 mutations using PNA-clamp smart amplification process version 2 in lung adenocarcinoma

scientific article

Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method

scientific article

Clusters of internally primed transcripts reveal novel long noncoding RNAs

scientific article published on 28 April 2006

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

scientific article published on July 2003

Combination of L-3-phosphoserine phosphatase and CEA using real-time RT-PCR improves accuracy in detection of peritoneal micrometastasis of gastric cancer

scientific article published on March 2004

Comparative analysis of expression of histone H2a genes in mouse

scientific article

Comparative analysis of mouse NotI linking clones with mouse and human genomic sequences and transcripts

scientific article published in January 1995

Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data

scientific article

Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries

scientific article

Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution

scientific article

Comparative mapping of the reeler gene on human chromosome 7q22, rat chromosome 4q11.2, and mouse chromosome 5 A3-B1.

scientific article published in June 1996

Comparative transcriptomics of primary cells in vertebrates

scientific article published on 27 July 2020

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

scientific article

Comparison of DNA methylation patterns among mouse cell lines by restriction landmark genomic scanning

scientific article published on November 1994

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation

scientific article

Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR

scientific article published on January 1, 2010

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

scientific article

Complex Loci in human and mouse genomes

scientific article

Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana

scientific article published in December 2003

Comprehensive analysis of the mouse metabolome based on the transcriptome

scientific article published on June 2003

Comprehensive characterisation of transcriptional activity during influenza A virus infection reveals biases in cap-snatching of host RNA sequences

scientific article published on 11 March 2020

Comprehensive search for HNF-1beta-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi

scientific article

Comprehensive sequence analysis of translation termination sites in various eukaryotes

scientific article published in October 2002

Computational analysis of full-length mouse cDNAs compared with human genome sequences

scientific article published in September 2001

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa).

scientific article published on 12 January 2005

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

scientific article

Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.

scientific article

Concise prediction models of anticancer efficacy of 8 drugs using expression data from 12 selected genes

scientific article

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

scientific article

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

scientific article published on 01 August 2018

Constructing ORFeome resources with removable termination codons

scientific article published on 01 July 2006

Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags

scientific article published on 01 August 2004

Construction of high-resolution physical maps from yeast artificial chromosomes using restriction landmark genomic scanning (RLGS)

scientific article published on 01 October 1996

Construction of reliable protein–protein interaction networks with a new interaction generality measure ⬇️

scientific article published on April 12, 2003

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

article

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

scientific article

Correction to: Relatively frequent switching of transcription start sites during cerebellar development

scientific article

Correction: Cytoskeletal Rearrangements in Synovial Fibroblasts as a Novel Pathophysiological Determinant of Modeled Rheumatoid Arthritis

scientific article

Correction: discovery of molecular markers to discriminate corneal endothelial cells in the human body

scientific article published on 26 May 2015

Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes

scientific article

Correlation of EGFR or KRAS mutation status with 18F-FDG uptake on PET-CT scan in lung adenocarcinoma

scientific article

Corrigendum to: prediction of human cDNA from its homologous mouse full-length cDNA and human shotgun database

scientific article published on 01 April 2000

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

scholarly article published in Nature Genetics

Corrigendum: TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression.

scientific article

Corrigendum: Tiny RNAs associated with transcription start sites in animals

scholarly article published in Nature Genetics

CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication

scientific article published on 17 August 2012

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

scientific article

Crystal structure analysis of the PHD domain of the transcription co-activator Pygopus

scientific article published on 20 April 2007

Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution

scientific article

Crystal structure of the RUN domain of the RAP2-interacting protein x

scientific journal article

Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis

scientific article

DNA book

scientific article

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

scientific article

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation

scientific article

Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference

scientific article published on April 2008

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

scientific article published on 4 November 2015

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.

scientific article published on 19 May 2016

Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays

scholarly article

Detecting expressed genes using CAGE.

scientific article

Detection and cloning of an X-linked locus associated with a NotI site that is not methylated on mouse inactivated X chromosome by the RLGS-M method

scientific article published in October 1999

Detection of SNP by the isothermal smart amplification method

scientific article

Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure

scientific article

Development and evaluation of an automated annotation pipeline and cDNA annotation system

scientific article

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

scientific article

Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential

scientific article

Development of a spot reliability evaluation score for DNA microarrays

scientific article

Differential expression of genes within the cochlea as defined by a custom mouse inner ear microarray

scientific article

Differential gene expression profiles of gastric cancer cells established from primary tumour and malignant ascites

scientific article published on November 2002

Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation

scientific article published on 27 March 2014

Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units

scientific article

Differentially expressed genes throughout the cellular immortalization processes are quite different between normal human fibroblasts and endothelial cells.

scientific article published on July 2005

Direct Determination of NotI Cleavage Sites in the Genomic DNA of Adult Mouse Kidney and Human Trophoblast Using Whole-Range Restriction Landmark Genomic Scanning ⬇️

scientific article published on 01 January 1994

Direct and rapid genotyping of SLCO1B1 388A>G and 521T>C in human blood specimens using the SmartAmp-2 method

scientific article published on 8 March 2013

Direct and rapid genotyping of glutathione-S-transferase M1 and T1 from human blood specimens using the SmartAmp2 method

scientific article published on 7 July 2010

Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach

scientific article

Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized

scientific article

Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection

scientific article published on 6 January 2018

Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling

scientific article

Discovery of molecular markers to discriminate corneal endothelial cells in the human body

scientific article published on 25 March 2015

Discovery of the "RNA continent" through a contrarian's research strategy ⬇️

scientific article published on January 1, 2011

Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches

scientific article

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

scientific article

Discrimination of non-protein-coding transcripts from protein-coding mRNA.

scientific article published on January 2006

Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells

scientific journal article

Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides

scientific article

Dynamic transcriptome of mice

scientific article published on April 2004

Dynamic usage of transcription start sites within core promoters

scientific article published on January 2006

Dysfunction of the Orleans reeler gene arising from exon skipping due to transposition of a full-length copy of an active L1 sequence into the skipped exon

scientific article published on July 1996

EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes

scientific article

Earwax, osmidrosis, and breast cancer: why does one SNP (538G>A) in the human ABC transporter ABCC11 gene determine earwax type?

scientific article

Edesign: Primer and Enhanced Internal Probe Design Tool for Quantitative PCR Experiments and Genotyping Assays

scientific article published on 10 February 2016

Effect of Thiazole Orange Doubly Labeled Thymidine on DNA Duplex Formation ⬇️

scientific article published on July 25, 2012

Effects Of The Turn-Back Primer on Intermediate Product Generation in Isothermal DNA Amplification ⬇️

scientific article published on December 1, 2010

Emerging new technologies in Pharmacogenomics: rapid SNP detection, molecular dynamic simulation, and QSAR analysis methods to validate clinically important genetic variants of human ABC Transporter ABCB1 (P-gp/MDR1).

scientific article published on 04 February 2010

Empirical analysis of transcriptional activity in the Arabidopsis genome

scientific article (publication date: 31 October 2003)

Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases

scientific article

Environmental cDNA analysis of the genes involved in lignocellulose digestion in the symbiotic protist community of Reticulitermes speratus

scientific article

Eprobe mediated real-time PCR monitoring and melting curve analysis

scientific article

Eprobe-mediated screening system for somatic mutations in the KRAS locus

scientific article published on 30 March 2015

Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming

scientific article published on 8 August 2012

Evolutionary turnover of mammalian transcription start sites

scientific article

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

scientific article

Exploration of novel motifs derived from mouse cDNA sequences

scientific article

Exploration of small RNAs

scientific article

Expression analysis for inverted effects of serotonin transporter inactivation

scientific article published on 22 January 2008

Expression analysis of genes responsible for serotonin signaling in the brain

scientific article published in August 2005

Extra-long first-strand cDNA synthesis

scientific article

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

scientific article published on 19 November 2020

FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones

scientific article published on 01 February 2003

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

scientific article published on 19 April 2009

FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

scientific article

FOXP1 is an androgen-responsive transcription factor that negatively regulates androgen receptor signaling in prostate cancer cells

scientific article

FREP: a database of functional repeats in mouse cDNAs

scientific article

FXYD6, a Na,K-ATPase Regulator, Is Expressed in Type II Taste Cells

scientific article published on 13 June 2011

Five candidate genes for hamster cardiomyopathy did not map to the cardiomyopathy locus by FISH analysis

scientific article published in August 1996

Force measurement for antigen-antibody interaction by atomic force microscopy using a photograft-polymer spacer

scientific article

Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis

scientific article

Functional annotation of a full-length Arabidopsis cDNA collection

scientific article

Functional annotation of a full-length mouse cDNA collection

scientific article (publication date: 8 February 2001)

Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

scientific article published on 21 March 2016

Functional screening revisited in the postgenomic era.

scientific article

G alpha14 is a candidate mediator of sweet/umami signal transduction in the posterior region of the mouse tongue

scientific article

Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article

Gene discovery in genetically labeled single dopaminergic neurons of the retina

scholarly article

Gene expression during liver regeneration after partial hepatectomy in mice lacking type 1 tumor necrosis factor receptor

scientific article published on 31 January 2008

Gene expression profile analysis of regenerating liver after portal vein ligation in rats by a cDNA microarray system

scientific article

Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.

scientific article

Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray

scientific article

Generation of full-length cDNA libraries: focus on plants

scientific article

Genetic control of the innate immune response

scientific article

Genetic mapping of restriction landmark genomic scanning loci in the mouse

scientific article published on February 1995

Genetics, gene expression and bioinformatics of the pituitary gland

scientific article

Genome Network and FANTOM3: assessing the complexity of the transcriptome

scientific article (publication date: April 2006)

Genome annotation

scientific article published on January 2008

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

scientific article

Genome wide analysis of TNF-inducible genes reveals that antioxidant enzymes are induced by TNF and responsible for elimination of ROS.

scientific article published in July 2004

Genome-wide analysis of abnormal H3K9 acetylation in cloned mice

scientific article

Genome-wide analysis of cancer/testis gene expression

scientific article

Genome-wide analysis of mammalian promoter architecture and evolution

scientific article (publication date: June 2006)

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

scientific article

Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes

scientific article

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation

scientific article

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.

scientific article

Genomic Instability of iPSCs: Challenges Towards Their Clinical Applications

scientific article

Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality

scientific article published on 21 March 2007

Genomics approach to abscisic acid- and gibberellin-responsive genes in rice

scientific article published in December 2003

Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A.

scientific article

Heterotachy in mammalian promoter evolution

scientific article published on 28 April 2006

Hidden layers of human small RNAs

scientific article

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

scientific article published on 23 December 2015

High efficiency selection of full-length cDNA by improved biotinylated cap trapper.

scientific article published on February 1997

High sensitivity TSS prediction: estimates of locations where TSS cannot occur

scientific article

High-efficiency full-length cDNA cloning by biotinylated CAP trapper

scientific article

High-resolution promoter map of human limbal epithelial cells cultured with keratinocyte growth factor and rho kinase inhibitor

scientific article

High-throughput mapping of a dynamic signaling network in mammalian cells

scientific article (publication date: 11 March 2005)

Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016

scientific article

Human genome research enters a new phase

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identification and characterization of Zic4, a new member of the mouse Zic gene family

scientific article published in June 1996

Identification and characterization of nCLP2, a novel C1q family protein expressed in the central nervous system

scientific article

Identification and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity

scientific journal article

Identification of DNA regions and a set of transcriptional regulatory factors involved in transcriptional regulation of several human liver-enriched transcription factor genes

scientific article

Identification of Grf1 on mouse chromosome 9 as an imprinted gene by RLGS-M.

scientific article published in September 1996

Identification of ZNF395 as a novel modulator of adipogenesis ⬇️

scientific article published on November 7, 2012

Identification of a developmentally regulated striatum-enriched zinc-finger gene, Nolz-1, in the mammalian brain

scholarly article

Identification of a novel left-right asymmetrically expressed gene in the mouse belonging to the BPI/PLUNC superfamily

scientific article published in February 2004

Identification of a novel member of the snail/Gfi-1 repressor family, mlt 1, which is methylated and silenced in liver tumors of SV40 T antigen transgenic mice

scientific journal article

Identification of a novel mouse membrane-bound family 1 glycosidase-like protein, which carries an atypical active site structure

scientific journal article

Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method

scientific article published in January 1994

Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi

scientific article published on 07 January 2009

Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method.

scientific article

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis

scientific article published on 18 September 2019

Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection

scientific article (publication date: June 2003)

Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.

scientific article

Identification of seven loci for static glucokinesis and dynamic glucokinesis in mice

scientific article

Identification of the Syrian hamster cardiomyopathy gene.

scientific article

Identification of transcriptional regulatory cascades in retinoic acid-induced growth arrest of HepG2 cells

scientific article published on 29 April 2008

Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library

scientific article

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome

scientific article

Inactive allele-specific methylation and chromatin structure of the imprinted gene U2af1-rs1 on mouse chromosome 11

scientific article published on 01 July 1996

Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display

scientific article published on March 1999

Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation

scientific article

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data

scientific article

Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function

scientific article

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Initial sequencing and comparative analysis of the mouse genome

scientific article

Integrated analysis of the genome and the transcriptome by FANTOM.

scientific article published in September 2004

Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells

scientific article

Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity

article

Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC.

scientific article published on 11 July 2017

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells

scientific article

Interaction generality, a measurement to assess the reliability of a protein-protein interaction

scientific article published on March 2002

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.

scientific article published in March 2014

Isolation of a novel mouse gene, mSVS-1/SUSD2, reversing tumorigenic phenotypes of cancer cells in vitro

scientific article published on 12 April 2007

Isothermal single nucleotide polymorphism genotyping and direct PCR from whole blood using a novel whole-blood lysis buffer

scientific article published in December 2009

LOCATE: a mouse protein subcellular localization database

scientific article

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action

scientific article

LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression

scientific article published on July 2006

LRRN4 and UPK3B Are Markers of Primary Mesothelial Cells ⬇️

scientific article published on October 3, 2011

Landscape of transcription in human cells

scientific article (publication date: 6 September 2012)

Large-scale clustering of CAGE tag expression data

scientific article

Large-scale collection and characterization of promoters of human and mouse genes.

scientific article

Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas

scientific article

Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells

scientific article

Linkage map of Syrian hamster with restriction landmark genomic scanning

scientific article published on 01 February 1997

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

scientific article published on 3 October 2017

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

scientific article

Localization of mouse imprinted gene U2af1-rs1 to A3.2-4 band of chromosome 11 by FISH

scientific article published on 01 October 1994

MOIRAI: a compact workflow system for CAGE analysis

scientific article

MaXML: mouse annotation XML.

scientific article published on 26 December 2003

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

scientific article published on 8 May 2007

Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B

scientific article

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

scientific article

Mapping of 19032 mouse cDNAs on mouse chromosomes

scientific article published in January 2002

Mechanism of liver regeneration after partial hepatectomy using mouse cDNA microarray

scientific article

Mechanism of postoperative liver failure after excessive hepatectomy investigated using a cDNA microarray

scientific article published in January 2002

Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules

scientific article

Metagenomic diagnosis of bacterial infections

scientific article

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

scientific article

Methylation and downregulated expression of mac25/insulin-like growth factor binding protein-7 is associated with liver tumorigenesis in SV40T/t antigen transgenic mice, screened by restriction landmark genomic scanning for methylation (RLGS-M).

scientific article

Methylation profiles of genomic DNA of mouse developmental brain detected by restriction landmark genomic scanning (RLGS) method

scientific article

Mice and men: their promoter properties

scientific article

MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis

scientific article published on 25 September 2019

Molecular analysis of gene expression in the developing pontocerebellar projection system

scientific article published in October 2002

Molecular basis of constitutive production of basement membrane components. Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells

scientific article published on 10 September 2003

Molecular cloning, genetic mapping, and expression of the mouse Sf3b1 (SAP155) gene for the U2 snRNP component of spliceosome

scientific article

Monitoring the Expression Pattern of 1300 Arabidopsis Genes under Drought and Cold Stresses by Using a Full-Length cDNA Microarray

article

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

scientific article

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

article

Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray

scientific article

Monitoring transcription initiation activities in rat and dog.

scientific article

Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs

scientific article published in August 2004

Multifaceted mammalian transcriptome

scientific article published on 28 May 2008

Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene

scientific article (publication date: 27 March 2003)

Mutation analysis of 2009 pandemic influenza A(H1N1) viruses collected in Japan during the peak phase of the pandemic

scientific article

Mutation detection of epidermal growth factor receptor and KRAS genes using the smart amplification process version 2 from formalin-fixed, paraffin-embedded lung cancer tissue

scientific article

Mutation of Dock5, a member of the guanine exchange factor Dock180 superfamily, in the rupture of lens cataract mouse

scientific journal article

NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements

scientific article published on 02 September 2019

NF-kappaB activator Act1 associates with IL-1/Toll pathway adaptor molecule TRAF6

scientific article

NGSView: an extensible open source editor for next-generation sequencing data

scientific article

NMR solution structures of actin depolymerizing factor homology domains

scientific article

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

scientific article

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

scientific article published on May 2009

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

scientific article published on 20 May 2009

Naturally occurring antisense RNA of histone H2a in mouse cultured cell lines

scientific article

New pyrosequencing method to analyze the function of the Klenow fragment (EXO-) for unnatural nucleic acids: pyrophosphorolysis and incorporation efficiency.

scientific article

Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes

scientific article

Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation

scientific article

Noncoding RNA transcription beyond annotated genes

scientific article

Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes

scientific article published on 30 January 2012

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes

scientific article

Novel ELISA using intracellularly biotinylated antigen for detection of antibody following DNA immunization.

scientific article

Novel biomarkers that assist in accurate discrimination of squamous cell carcinoma from adenocarcinoma of the lung

scientific article

Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells

scientific article (publication date: 2011)

Off-target effect of endogenous siRNA derived from RMRP in human cells

scientific article published on 29 April 2013

On biased distribution of introns in various eukaryotes

scientific article

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

scientific article published on 26 December 2016

One-step detection of the 2009 pandemic influenza A(H1N1) virus by the RT-SmartAmp assay and its clinical validation

scientific article

Optimization of turn-back primers in isothermal amplification

scientific article published on 9 February 2011

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

scientific article

Paternal Imprinting of Mouse Serotonin Receptor 2A GeneHtr2in Embryonic Eye: A Conserved Imprinting Regulation on theRB/RbLocus ⬇️

scientific article published on January 1, 1998

Pharmacogenomics of Human ABC Transporters: Detection of Clinically Important SNPs by SmartAmp2 Method ⬇️

scientific article published on April 1, 2011

Pharmacologic preconditioning effects: prostaglandin E1 induces heat-shock proteins immediately after ischemia/reperfusion of the mouse liver

scientific article published in July 2005

PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases

scientific article

Practical application of transcriptional sequencing for GC-rich templates

scientific article published on 01 January 2003

Prediction of human cDNA from its homologous mouse full-length cDNA and human shotgun database.

scientific article published in December 1999

Preparation of full-length cDNA libraries: focus on metazoans

scientific article

Preprocessing implementation for microarray (PRIM): an efficient method for processing cDNA microarray data.

scientific article

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

scientific article

Production of human thyroid-stimulating hormone in Chinese hamster ovary cells

scientific article published on 01 December 1987

Prognostic potential of the MDM2 309T>G polymorphism in stage I lung adenocarcinoma

scientific article published on 26 May 2016

Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β

scientific article published in Scientific Reports

Promoter architecture of mouse olfactory receptor genes

scientific journal article

Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells

scientific article published on 16 July 2015

Promoter-level transcriptome in primary lesions of endometrial cancer identified biomarkers associated with lymph node metastasis

scientific article published on 26 October 2017

Protein-protein interaction panel using mouse full-length cDNAs

scientific article

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

scientific article

Pseudo-messenger RNA: phantoms of the transcriptome

scientific article published on 28 April 2006

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).

scientific article

RIKEN mouse genome encyclopedia

scientific article

RNAdb--a comprehensive mammalian noncoding RNA database

scientific article

Rapid Detection of SNP (c.309T>G) in the MDM2 Gene by the Duplex SmartAmp Method ⬇️

scientific article published on April 2, 2013

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology

scientific article published on 18 February 2007

Rapid and cost-effective SNP detection method: application of SmartAmp2 to pharmacogenomics research

scientific article published in July 2009

Rapid detection of epidermal growth factor receptor mutations in lung cancer by the SMart-Amplification Process

scientific article published on September 2007

Rapid screening assay for KRAS mutations by the modified smart amplification process

scientific article published on 02 October 2008

Rapid single-nucleotide polymorphism detection of cytochrome P450 (CYP2C9) and vitamin K epoxide reductase (VKORC1) genes for the warfarin dose adjustment by the SMart-amplification process version 2.

scientific article published on 30 January 2009

Rapidly evolving human promoter regions

scientific article published in November 2008

Recognition Sites of 3′-OH Group by T7 RNA Polymerase and Its Application to Transcriptional Sequencing ⬇️

scientific article published on June 5, 1998

Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts ⬇️

scientific article published on March 13, 2012

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

scientific article

Redefinition of the human mast cell transcriptome by deep-CAGE sequencing

scientific article

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

scientific article

Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis

scientific article published on 2 November 2009

Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing

scientific article

Reproducible alterations of DNA methylation at a specific population of CpG islands during blast formation of peripheral blood lymphocytes

scientific article published on 01 December 1995

Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas

scientific article published on 4 November 2017

Restriction landmark genomic scanning (RLGS-M)-based genome-wide scanning of mouse liver tumors for alterations in DNA methylation status ⬇️

scientific article published on 01 August 1997

Restriction landmark genomic scanning method and its various applications

scientific article

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

scientific article published on 17 October 2009

Role of nitric oxide synthesized by nitric oxide synthase 2 in liver regeneration

scientific article published in July 2008

Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly

scientific article published on 25 March 2009

SAMStat: monitoring biases in next generation sequencing data

scientific article

SCCA2-like serpins mediate genetic predisposition to skin tumors

scientific article (publication date: 15 April 2003)

SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes

scientific article

SNP (-617C>A) in ARE-like loci of the NRF2 gene: a new biomarker for prognosis of lung adenocarcinoma in Japanese non-smoking women

scientific article

Sensitive detection of EGFR mutations using a competitive probe to suppress background in the SMart Amplification Process

scientific article

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

scientific article published in March 2018

Sharing genomes: an integrated approach to funding, managing and distributing genomic clone resources

scientific article published on 01 November 2004

Significance of RNAi in biology

scientific article published in December 2004

Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates

scientific article published on March 1997

Simplified ontologies allowing comparison of developmental mammalian gene expression

scientific article

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Single-nucleotide polymorphism (c.309T>G) in the MDM2 gene and lung cancer risk

scientific article

Small RNAs derived from snoRNAs

scientific article (publication date: July 2009)

Solution structure of a BolA-like protein from Mus musculus

scientific article

Solution structure of the PWWP domain of the hepatoma-derived growth factor family

scientific journal article

Solution structure of the RWD domain of the mouse GCN2 protein

scientific article published on August 2004

Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16)

scientific article

Solution structure of the general transcription factor 2I domain in mouse TFII-I protein

scientific article

Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.

scientific article

Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.

scientific article published in August 2005

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode

scientific article

Spatial patterns of gene expression in the olfactory bulb

scholarly article

Specific mesothelial signature marks the heterogeneity of mesenchymal stem cells from high-grade serous ovarian cancer.

scientific article

Splicing bypasses 3' end formation signals to allow complex gene architectures

scientific article

Spot mapping on the standard profile of restriction landmark genomic scanning (RLGS) of sorted chromosome 20 using methylation-insensitive enzyme

scientific article published on December 1994

Ssdp1 regulates head morphogenesis of mouse embryos by activating the Lim1-Ldb1 complex

scientific journal article

Stac, a novel neuron-specific protein with cysteine-rich and SH3 domains

scientific article

Structural and functional differences of SWIRM domain subtypes

scientific article

Structure and regulation of the mDot1 gene, a mouse histone H3 methyltransferase ⬇️

scientific article published on February 1, 2004

Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode

scientific article

Structure of the UNC5H2 death domain.

scientific article published on 23 November 2006

Structure of the oncoprotein gankyrin in complex with S6 ATPase of the 26S proteasome

scientific article

Subcellular Localization of Mammalian Type II Membrane Proteins

scientific article published on 01 May 2006

Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts

scientific article published in September 2003

Systematic analysis of transcription start sites in avian development

scientific article published on 5 September 2017

Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays

scientific article published on June 2003

Systemic identification of estrogen-regulated genes in breast cancer cells through cap analysis of gene expression mapping

scientific article published on 16 April 2014

T2BP, a novel TRAF2 binding protein, can activate NF-kappaB and AP-1 without TNF stimulation

scientific article

T7 RNA polymerase activation and improvement of the transcriptional sequencing by polyamines

scientific article published on 01 August 2000

TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression

scientific article published on 25 September 2015

TSHR Gene Polymorphisms in the Enhancer Regions Are Most Strongly Associated with the Development of Graves' Disease, Especially Intractable Disease, and of Hashimoto's Disease

scientific article

TagDust--a program to eliminate artifacts from next generation sequencing data

scientific article

Tail variation of the folding primer affects the SmartAmp2 process differently.

scientific article

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

scientific article

Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells

scientific article published on 25 February 2015

Telomerase reverse transcriptase regulates microRNAs

scientific article

Temporal dynamics and transcriptional control using single-cell gene expression analysis

scientific article

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes

scientific article

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

scientific article published on 19 April 2009

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

scientific article published on 29 August 2017

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

scientific article

The PDZ protein tax-interacting protein-1 inhibits beta-catenin transcriptional activity and growth of colorectal cancer cells

scientific journal article

The RIKEN integrated database of mammals

scientific article

The RNA continent

scientific article published on January 2008

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

scientific article

The Rasgrf1-repeat sequence (D9Ncvs53) maps between Mod1 and Rbp1 on mouse Chromosome 9 and may define a putative imprinted region ⬇️

scientific article published on March 1, 1998

The Riken mouse genome encyclopedia project

scientific article published on October 2003

The abundance of short proteins in the mammalian proteome

scientific article

The cell cycle control gene ZAC/PLAGL1 is imprinted--a strong candidate gene for transient neonatal diabetes

scientific article (publication date: 12 February 2000)

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

scientific article published on 22 June 2010

The complexity of the mammalian transcriptome

scientific article published on 20 July 2006

The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain

scientific journal article

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations

scientific article published on 26 March 2014

The frequent evolutionary birth and death of functional promoters in mouse and human

scientific article published on 30 July 2015

The gene responsible for LEC hepatitis, located on rat chromosome 16, is the homolog to the human Wilson disease gene

scientific article published on July 1994

The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer

scientific article

The mouse secretome: functional classification of the proteins secreted into the extracellular environment

scientific article

The mouse zic gene family. Homologues of the Drosophila pair-rule gene odd-paired

scientific article published in January 1996

The paternal methylation imprint of the mouse H19 locus is acquired in the gonocyte stage during foetal testis development

scientific article published in August 2000

The production of active human thyroid-stimulating hormone from alpha and beta mRNAs in Xenopus laevis oocytes

scientific article published on 01 April 1988

The reality of pervasive transcription

scientific article

The regulated retrotransposon transcriptome of mammalian cells

scientific article (publication date: May 2009)

The responsibility to share: sharing the responsibility

scientific article published in October 2004

The role of the carboxyl-terminal 6 amino acid extension of human TSH beta subunit

scientific article published on December 1989

The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi

scientific article

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

The use of restriction landmark genomic scanning to scan the mouse genome for endogenous loci with imprinted patterns of methylation

scientific article published on 01 February 1995

Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.

scientific article published on January 1998

Tiny RNAs associated with transcription start sites in animals

scientific article published on 19 April 2009

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

scientific article

Transcription and enhancer profiling in human monocyte subsets

scientific article published on 26 March 2014

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scientific article

Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution.

scientific article

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

scientific article

Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response

scientific article

Transcriptional features of genomic regulatory blocks

scientific article published on 19 April 2009

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

scientific article

Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis

scientific article published on 13 April 2004

Transcriptional sequencing: A method for DNA sequencing using RNA polymerase

scientific article

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

scientific article

Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers

scientific article published on 9 November 2015

Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles.

scientific article published on 9 April 2015

Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

scientific article published on 20 September 2016

Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera

scientific article published on 30 March 2005

Transcriptomics resources for functional genomics

scientific article published on 01 September 2007

Unamplified cap analysis of gene expression on a single-molecule sequencer.

scientific article

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

scientific article published on 01 January 2019

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

scientific article published on 12 November 2010

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

scientific article published on 27 October 2016

Use of the SST-REX method for the identification of genes expressed at the condensation stage of chondrogenic cell line ATDC5.

scientific article published in January 2006

Usefulness of peptide nucleic acid (PNA)-clamp smart amplification process version 2 (SmartAmp2) for clinical diagnosis of KRAS codon 12 mutations in lung adenocarcinoma: comparison of PNA-clamp SmartAmp2 and PCR-related methods

scientific article

Wavelet profiles: their application in Oryza sativa DNA sequence analysis

World of functional RNA

scientific article

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

scientific article

[Identification of genes by mouse genome and transcriptome analysis].

scientific article

[Restriction landmark genomic scanning (RLGS) method and its application]

scientific article published on 01 February 1993

miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression ⬇️

scientific article published on September 7, 2010

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns

scientific article published on 3 November 2011

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