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List of works by Gerald M. Rubin

A BAC-based physical map of the major autosomes of Drosophila melanogaster.

scientific article

A Circuit Node that Integrates Convergent Input from Neuromodulatory and Social Behavior-Promoting Neurons to Control Aggression in Drosophila

scientific article published in August 2017

A Drosophila complementary DNA resource

scholarly article

A Drosophila gene regulated by rough and glass shows similarity to ena and VASP.

scientific article

A GAL4-driver line resource for Drosophila neurobiology

scientific article

A Higher Brain Circuit for Immediate Integration of Conflicting Sensory Information in Drosophila

scientific article published on 19 August 2015

A brief history of Drosophila's contributions to genome research

scientific article published on March 2000

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome

scientific article

A connectome and analysis of the adult Drosophila central brain

scientific article published on 03 September 2020

A connectome of a learning and memory center in the adult Drosophila brain

scientific article

A directional tuning map of Drosophila elementary motion detectors

scientific article

A dopamine-modulated neural circuit regulating aversive taste memory in Drosophila

scientific article published on 14 May 2015

A genetic, genomic, and computational resource for exploring neural circuit function

scientific article published on 15 January 2020

A high throughput screen to identify secreted and transmembrane proteins involved in Drosophila embryogenesis

scientific article

A new brain dopamine-deficient Drosophila and its pharmacological and genetic rescue

scientific article

A putative Ras GTPase activating protein acts as a negative regulator of signaling by the Sevenless receptor tyrosine kinase

scientific article

A resource for manipulating gene expression and analyzing cis-regulatory modules in the Drosophila CNS.

scientific article

A small tandem duplication is responsible for the unstable white-ivory mutation in Drosophila

scientific article published in August 1982

A subset of dopamine neurons signals reward for odour memory in Drosophila

scientific article published in August 2012

A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster

scientific article

A visual motion detection circuit suggested by Drosophila connectomics

scientific article published on August 2013

ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos

scientific article

An SH3-SH2-SH3 protein is required for p21Ras1 activation and binds to sevenless and Sos proteins in vitro

scientific article

An expectation maximization algorithm for training hidden substitution models.

scientific article

An opsin gene expressed in only one photoreceptor cell type of the Drosophila eye.

scientific article

Analysis of P transposable element functions in drosophila

article

Analysis of the enhancer element that controls expression of sevenless in the developing Drosophila eye

scientific article published on August 1991

Bethesda Statement on Open Access Publishing ⬇️

copyright manifesto

BioViews: Java-based tools for genomic data visualization

scientific article

Cathepsin D-deficient Drosophila recapitulate the key features of neuronal ceroid lipofuscinoses

scientific article

Cell types and neuronal circuitry underlying female aggression in Drosophila

scientific article published on 03 November 2020

Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method

article

Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila

article by Michael-John Dolan et al published 7 November 2018 in Neuron

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

scientific article (publication date: 4 October 2002)

Comparison of the sevenless genes of Drosophila virilis and Drosophila melanogaster

scientific article

Complementary miRNA pairs suggest a regulatory role for miRNA:miRNA duplexes

scientific article published in February 2004

Contributions of the 12 neuron classes in the fly lamina to motion vision

scientific article

Control of Sleep by Dopaminergic Inputs to the Drosophila Mushroom Body

scientific article

Correction: Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics

scientific article published on 22 October 2020

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

scientific article published on 01 January 2019

DNA sequence of the white locus of Drosophila melanogaster.

scientific article published in December 1984

Development of the Drosophila retina: inductive events studied at single cell resolution

scientific article published on May 1989

Direct neural pathways convey distinct visual information to Drosophila mushroom bodies

scientific article published on 15 April 2016

Disconnected: a locus required for neuronal pathway formation in the visual system of Drosophila

scientific article published in September 1987

Distinct dopamine neurons mediate reward signals for short- and long-term memories

scientific article

Dopaminergic neurons write and update memories with cell-type-specific rules

scientific article published on 21 July 2016

Drosophila Neuralized Is a Ubiquitin Ligase that Promotes the Internalization and Degradation of Delta ⬇️

scientific article published on December 1, 2001

Drosophila and human RecQ5 exist in different isoforms generated by alternative splicing

scientific article

Drosophila fragile X-related gene regulates the MAP1B homolog Futsch to control synaptic structure and function

scientific article published in November 2001

Drosophila homologs of baculovirus inhibitor of apoptosis proteins function to block cell death

scientific article

Drosophila matrix metalloproteinases are required for tissue remodeling, but not embryonic development

scientific article

Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage

scientific article published on February 2004

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

scientific article

Drosophila p53 binds a damage response element at the reaper locus

scientific article published on March 2000

Ectopic expression of a minor Drosophila opsin in the major photoreceptor cell class: distinguishing the role of primary receptor and cellular context.

scientific article published in May 1988

Effect of heat shock on the synthesis of low molecular weight RNAs in drosophilia: accumulation of a novel form of 5S RNA.

scientific article

Effect on eye development of dominant mutations in Drosophila homologue of the EGF receptor.

scientific article published in July 1989

Effects of transposable element insertions on RNA encoded by the white gene of Drosophila.

scientific article published in September 1984

Ellipse mutations in the Drosophila homologue of the EGF receptor affect pattern formation, cell division, and cell death in eye imaginal discs

scientific article published in April 1992

Evidence for Drosophila P element transposase activity in mammalian cells and yeast

scientific article published in March 1988

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

scientific article

FB elements are the common basis for the instability of the wDZL and wC Drosophila mutations.

scientific article published in September 1982

FlyBook: A Preface

scientific article published in October 2015

Functional domain analysis of glass, a zinc-finger-containing transcription factor in Drosophila

scientific article

Gene disruptions using P transposable elements: an integral component of the Drosophila genome project

scientific article

Gene ontology: tool for the unification of biology

scientific article

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

scientific article

Genetic Reagents for Making Split-GAL4 Lines in Drosophila.

scientific article published on 13 March 2018

Genetic reagents for making split-GAL4 lines in Drosophila

article published in 2017

Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays ⬇️

scientific article

Global analyses of mRNA translational control during early Drosophila embryogenesis

scientific article published in January 2007

Global analysis of patterns of gene expression during Drosophila embryogenesis

scientific article published on January 2007

Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila

scientific article published in December 2015

High-frequency precise excision of the Drosophila foldback transposable element

scientific article published in May 1983

High-performance probes for light and electron microscopy

scientific article

Identification and immunochemical analysis of biologically active Drosophila P element transposase

scientific article published on January 1986

Identification of genes that interact with the sina gene in Drosophila eye development

scientific article published in November 1994

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster

scientific article

Insertion of the Drosophila transposable element copia generates a 5 base pair duplication

scientific article published in September 1980

Insertion site preferences of the P transposable element in Drosophila melanogaster

scientific article

Isolation and structure of a rhodopsin gene from D. melanogaster

scientific article published in April 1985

Isolation of a putative phospholipase C gene of Drosophila, norpA, and its role in phototransduction.

scientific article published in August 1988

Janelia Farm: an experiment in scientific culture

scientific article

KSR stimulates Raf-1 activity in a kinase-independent manner

scientific article published on November 1997

KSR, a novel protein kinase required for RAS signal transduction

scientific article

Kuzbanian Controls Proteolytic Processing of Notch and Mediates Lateral Inhibition during Drosophila and Vertebrate Neurogenesis ⬇️

scientific article published on July 25, 1997

Large-scale trends in the evolution of gene structures within 11 animal genomes

scientific article

Localization of the sevenless protein, a putative receptor for positional information, in the eye imaginal disc of Drosophila

scientific article published in October 1987

Location and magnification of 5 S RNA genes in Saccharomyces cerevisiae

article

Looking back and looking forward at Janelia

scholarly article by Gerald M. Rubin & Erin K. O'Shea published 7 February 2019 in eLife

Loss of tramtrack gene activity results in ectopic R7 cell formation, even in a sina mutant background

scientific article published on May 1996

Making a difference: the role of cell-cell interactions in establishing separate identities for equivalent cells

scientific article (publication date: 24 January 1992)

Mapping the Neural Substrates of Behavior.

scientific article published in July 2017

Molecular analysis of no-on-transient A, a gene required for normal vision in Drosophila

scientific article published in May 1990

Moonwalker Descending Neurons Mediate Visually Evoked Retreat in Drosophila

scientific article

Multiple new site-specific recombinases for use in manipulating animal genomes

scientific article (publication date: 23 August 2011)

Mushroom body efferent neurons responsible for aversive olfactory memory retrieval in Drosophila

scientific article published on 19 June 2011

Mutations in Hsp83 and cdc37 impair signaling by the sevenless receptor tyrosine kinase in Drosophila.

scientific article

Mutations in the Drosophila Rop gene suggest a function in general secretion and synaptic transmission

scientific article

Mutations on the second chromosome affecting the Drosophila eye.

scientific article published in May 1992

Negative control of photoreceptor development in Drosophila by the product of the yan gene, an ETS domain protein

scientific article published on August 1992

Neural Circuit to Integrate Opposing Motions in the Visual Field

scientific article published in July 2015

Neuralized is essential for a subset of Notch pathway-dependent cell fate decisions during Drosophila eye development.

scientific article published in May 2001

Neuroarchitecture and neuroanatomy of the Drosophila central complex: A GAL4-based dissection of protocerebral bridge neurons and circuits

scientific article published on 16 December 2014

Neuroarchitecture of the Drosophila central complex: A catalog of nodulus and asymmetrical body neurons and a revision of the protocerebral bridge catalog.

scientific article published on 18 October 2018

Neurogenetic dissection of the lateral horn reveals major outputs, diverse behavioural functions, and interactions with the mushroom body

scholarly article by Michael-John Dolan et al published 21 May 2019 in eLife

Neuron hemilineages provide the functional ground plan for the Drosophila ventral nervous system

scientific article published on 20 July 2015

Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics

scientific article published on 14 November 2019

Nurturing interdisciplinary research

scientific article

Ommatidia in the developing Drosophila eye require and can respond to sevenless for only a restricted period

scientific article published on 01 March 1989

Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system

scientific article published on 11 May 2015

P element insertion-dependent gene activation in the Drosophila eye.

scientific article published on May 1997

P1 interneurons promote a persistent internal state that enhances inter-male aggression in Drosophila

scientific article published on 29 December 2015

PHYL acts to down-regulate TTK88, a transcriptional repressor of neuronal cell fates, by a SINA-dependent mechanism.

scientific article published on August 1997

PTP-ER, a novel tyrosine phosphatase, functions downstream of Ras1 to downregulate MAP kinase during Drosophila eye development

scientific article published on June 1999

Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs

scientific article

Physical linkage of the 5 S cistrons to the 18 S and 28 S ribosomal RNA cistrons in Saccharomyces cerevisiae

Pk92B: a Drosophila melanogaster protein kinase that belongs to the MEKK family

scientific article published on March 1996

Plasticity-driven individualization of olfactory coding in mushroom body output neurons

scientific article published on 30 September 2015

Polymorphisms in the chromosomal locations of elements of the 412, copia and 297 dispersed repeated gene families in Drosophila

scientific article published on June 1979

Propagation of Homeostatic Sleep Signals by Segregated Synaptic Microcircuits of the Drosophila Mushroom Body

scientific article

Quantitative analysis of bristle number in Drosophila mutants identifies genes involved in neural development

scientific article published in August 2003

Quick preparation of genomic DNA from Drosophila

scientific article published in April 2009

Ras1 and a putative guanine nucleotide exchange factor perform crucial steps in signaling by the sevenless protein tyrosine kinase.

scientific article published in November 1991

Recovery of DNA sequences flanking P-element insertions in Drosophila: inverse PCR and plasmid rescue

scientific article published in April 2009

Refinement of tools for targeted gene expression in Drosophila.

scientific article

Representations of Novelty and Familiarity in a Mushroom Body Compartment

scientific article published on 09 May 2017

Reward signal in a recurrent circuit drives appetitive long-term memory formation

scientific article published on 17 November 2015

Shared mushroom body circuits underlie visual and olfactory memories in Drosophila

scientific article

Signal transduction and the fate of the R7 photoreceptor in Drosophila ⬇️

scientific article published on November 1, 1991

Signalling by the sevenless protein tyrosine kinase is mimicked by Ras1 activation.

scientific article published in February 1992

Spatial readout of visual looming in the central brain of Drosophila

scientific article published on 18 November 2020

Star is required for neuronal differentiation in the Drosophila retina and displays dosage-sensitive interactions with Ras1.

scientific article published in November 1993

Star is required in a subset of photoreceptor cells in the developing Drosophila retina and displays dosage sensitive interactions with rough.

scientific article published in April 1991

Structural and functional comparisons of the Drosophila virilis and Drosophila melanogaster rough genes

scientific article

Structure of chromosomal rearrangements induced by the FB transposable element in Drosophila

scientific article published in March 1984

Structure of the Drosophila mutable allele, white-crimson, and its white-ivory and wild-type derivatives

scientific article published in August 1982

Structures of P transposable elements and their sites of insertion and excision in the Drosophila melanogaster genome

scientific article published in August 1983

Synaptic function modulated by changes in the ratio of synaptotagmin I and IV.

scientific article published in August 1999

TAF(II)s mediate activation of transcription in the Drosophila embryo

scientific article published on December 1996

Targeted expression of teashirt induces ectopic eyes in Drosophila

scientific article

Targeted mutagenesis by homologous recombination in D. melanogaster

scientific article published on June 2002

Targets of glass regulation in the Drosophila eye disc

scientific article published in May 1996

Terminal repeats of the Drosophila transposable element copia: nucleotide sequence and genomic organization.

scientific article published in September 1980

The 5' termini of RNAs encoded by the transposable element copia

scientific article published on December 1981

The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes

scientific article

The C-terminus of the homeodomain is required for functional specificity of the Drosophila rough gene

scientific article

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes

scientific article

The Drosophila genome project: a progress report ⬇️

scientific article published on September 1, 1998

The Drosophila melanogaster genome

scientific article

The Drosophila melanogaster ribosomal S6 kinase II-encoding sequence

scientific article published on July 1994

The Drosophila ninaC locus encodes two photoreceptor cell specific proteins with domains homologous to protein kinases and the myosin heavy chain head

scientific article

The Drosophila peanut gene is required for cytokinesis and encodes a protein similar to yeast putative bud neck filament proteins

scientific article published on May 1994

The Drosophila roughened mutation: activation of a rap homolog disrupts eye development and interferes with cell determination

scientific article published in November 1991

The Drosophila seven-up gene, a member of the steroid receptor gene superfamily, controls photoreceptor cell fates

scientific article

The Drosophila synaptotagmin-like protein bitesize is required for growth and has mRNA localization sequences within its open reading frame

scientific article

The Drosophila zfh-1 and zfh-2 genes encode novel proteins containing both zinc-finger and homeodomain motifs

scientific article published in June 1991

The Emergence of Directional Selectivity in the Visual Motion Pathway of Drosophila

scientific article published in April 2017

The Ras signaling pathway in Drosophila

scientific article published on February 1995

The Release 6 reference sequence of the Drosophila melanogaster genome.

scientific article

The TGF beta homolog dpp and the segment polarity gene hedgehog are required for propagation of a morphogenetic wave in the Drosophila retina

scientific article published in December 1993

The Toll and Imd pathways are the major regulators of the immune response in Drosophila

scientific article

The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway

scientific article published on July 1994

The argos gene encodes a diffusible factor that regulates cell fate decisions in the Drosophila eye.

scientific article

The cell surface metalloprotease/disintegrin Kuzbanian is required for axonal extension in Drosophila

scientific article published on November 1996

The comprehensive connectome of a neural substrate for 'ON' motion detection in Drosophila

scientific article

The connectome of the adult <i>Drosophila</i> mushroom body provides insights into function

scientific article published on 14 December 2020

The draft sequences. Comparing species.

scientific article published in February 2001

The effect of chromosomal position on the expression of the Drosophila xanthine dehydrogenase gene

scientific article published in August 1983

The effort to make mosaic analysis a household tool

scientific article

The embryonic expression patterns of zfh-1 and zfh-2, two Drosophila genes encoding novel zinc-finger homeodomain proteins

scientific article published in June 1991

The genome sequence of Drosophila melanogaster

scientific article

The glass gene encodes a zinc-finger protein required by Drosophila photoreceptor cells

scientific article published in August 1989

The glia of the adult Drosophila nervous system

scientific article published on 30 January 2017

The molecular basis of P-M hybrid dysgenesis: the nature of induced mutations

scientific article published in July 1982

The optic lobe projection pattern of polarization-sensitive photoreceptor cells in Drosophila melanogaster

scientific article published in July 1991

The presumptive R7 cell of the developing Drosophila eye receives positional information independent of sevenless, boss and sina

scientific article published in March 1992

The role of the genome project in determining gene function: insights from model organisms

scientific article

The ryanodine receptor is essential for larval development in Drosophila melanogaster

scientific article published on May 2000

The ubiquitin ligase Drosophila Mind bomb promotes Notch signaling by regulating the localization and activity of Serrate and Delta

scientific article

The unstable wDZL mutation of Drosophila is caused by a 13 kilobase insertion that is imprecisely excised in phenotypic revertants

scientific article published in September 1982

Three forms of the 5.8-S ribosomal RNA species in Saccharomyces cerevisiae

scientific article

Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing

scientific article published in January 1986

Tools for neuroanatomy and neurogenetics in Drosophila

scholarly article

Transformation of white locus DNA in drosophila: dosage compensation, zeste interaction, and position effects.

scientific article published in February 1984

Translation and developmental regulation of RNA encoded by the eukaryotic transposable element copia

scientific article

Transposition of elements of the 412, copia and 297 dispersed repeated gene families in Drosophila

scientific article published on June 1979

Using translational enhancers to increase transgene expression in Drosophila

scientific article published on 9 April 2012

Vectors for P element-mediated gene transfer in Drosophila

scientific article published on September 1983

Visual projection neurons in the Drosophila lobula link feature detection to distinct behavioral programs

scientific article published on 28 December 2016

Wide-field feedback neurons dynamically tune early visual processing

scientific article published in May 2014

Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?

scientific article

Yan functions as a general inhibitor of differentiation and is negatively regulated by activation of the Ras1/MAPK pathway

scientific article published in June 1995

cAMP-dependent protein kinase and hedgehog act antagonistically in regulating decapentaplegic transcription in Drosophila imaginal discs

scientific article published in February 1995

gigas, a Drosophila homolog of tuberous sclerosis gene product-2, regulates the cell cycle

scientific article published on February 1999

misshapen encodes a protein kinase involved in cell shape control in Drosophila

scientific article published in February 1997

neuralized functions cell-autonomously to regulate a subset of notch-dependent processes during adult Drosophila development.

scientific article published in March 2001

phyllopod functions in the fate determination of a subset of photoreceptors in Drosophila

scientific article published in February 1995

rough, a Drosophila homeobox gene required in photoreceptors R2 and R5 for inductive interactions in the developing eye.

scientific article

seven in absentia, a gene required for specification of R7 cell fate in the Drosophila eye.

scientific article

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