A Comparative Evaluation of XML Difference Algorithms with Genomic Data

scholarly article published in Lecture Notes in Computer Science

A Functional Model for Dataspace Management Systems

A Prolog implementation of an object-oriented database system

doctoral thesis

A Semantically Enabled Service Architecture for Mashups over Streaming and Stored Data

A Semantics for a Query Language over Sensors, Streams and Relations

A classification of tasks for the systematic study of immune response using functional genomics data.

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A common open representation of mass spectrometry data and its application to proteomics research

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A critical and integrated view of the yeast interactome

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A logic-based integration of active and deductive databases

A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes

scientific article published on 04 July 2013

A novel approach to resource scheduling for parallel query processing on computational grids

A proposed framework for the description of plant metabolomics experiments and their results

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A query calculus for spatio-temporal object databases

A semantic sensor web for environmental decision support applications

scientific article (publication date: 2011)

A structured specification of an active database system

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

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A toolkit for capturing and sharing FuGE experiments

scientific article published on 17 September 2008

Active database systems

scientific article (publication date: March 1999)

Active rule analysis and optimisation in the rock & roll deductive object-oriented database

Adapting to Node Failure in Sensor Network Query Processing

Adaptive Workflow Processing and Execution in Pegasus

Adaptive join processing in pipelined plans

article published in 2010

Adaptive workflow processing and execution in Pegasus

Adaptive workload allocation in query processing in autonomous heterogeneous environments

article published in 2008

An Architecture for Query Optimization in Sensor Networks

scholarly article published April 2008

An Experimental Performance Evaluation of Spatio-Temporal Join Strategies

An analysis of extensible modelling for functional genomics data

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An ontology for bioinformatics applications.

scientific article published on June 1999

Approaches to deductive object-oriented databases

Automated tracking of gene expression in individual cells and cell compartments.

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Automatic annotation of Web services based on workflow definitions

scientific article (publication date: April 2008)

Autonomic query parallelization using non-dedicated computers: an evaluation of adaptivity options

Chapter 7: Dataspaces

Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi

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Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis

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Complex Query Formulation Over Diverse Information Sources in TAMBIS

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Comprehensive Optimization of Declarative Sensor Network Queries

Conceptual modelling of genomic information

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Crowdsourcing for data management

DSToolkit: An Architecture for Flexible Dataspace Management

Data Access and Integration in the ISPIDER Proteomics Grid

Data capture in bioinformatics: requirements and experiences with Pedro

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Data context informed data wrangling

Dataset Discovery and Exploration: A Survey

scientific article published on 04 October 2023

Defining and Using Schematic Correspondences for Automatically Generating Schema Mappings

Deploying In-Network Data Analysis Techniques in Sensor Networks

Design and implementation of ROCK & ROLL: A deductive object-oriented database system

article published in 1995

Dimensions of Dataspaces

Distributed Query Processing on the Grid

Efficient Feedback Collection for Pay-as-you-go Source Selection

Enabling community-driven information integration through clustering

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Enzyme kinetics informatics: from instrument to browser

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EvoMatch: An Evolutionary Algorithm for Inferring Schematic Correspondences

Executing In-network Queries Using SNEE

Extending a deductive object-oriented database system with spatial data handling facilities

article by Alvaro A. A. Fernandes et al published June 1999 in Information and Software Technology

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining

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Fairness-Aware Data Integration

scientific article published in 2022

Feedback-based annotation, selection and refinement of schema mappings for dataspaces

Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

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GIMS-a data warehouse for storage and analysis of genome sequence and functional data

GIMS: an integrated data storage and analysis environment for genomic and functional data

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GML for Representing Data from Spatio-Historical Databases: A Case Study

Growth control of the eukaryote cell: a systems biology study in yeast ⬇️

scientific article (publication date: 2007)

Guidelines for reporting the use of column chromatography in proteomics

Guidelines for reporting the use of gel electrophoresis in proteomics.

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INTERACT: an object oriented protein-protein interaction database.

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ISPIDER Central: an integrated database web-server for proteomics

scientific article published on 25 April 2008

Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite

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Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

scientific article published on March 2009

Incrementally improving dataspaces based on user feedback

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Information management for high content live cell imaging

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Information quality in proteomics.

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Kaleidoquery

KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways

scientific article published on 31 March 2009

MOVIE: An incremental maintenance system for materialized object views

Managing and sharing experimental data: standards, tools and pitfalls

scientific article

MatchBench: Benchmarking Schema Matching Algorithms for Schematic Correspondences

Measuring and modelling the performance of a parallel ODMG compliant object database server

Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it

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Modeling and managing experimental data using FuGE.

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Observing the Data Scientist

On Characterising and Identifying Mismatches in Scientific Workflows

On the use of agents in a BioInformatics grid

scholarly article published 2003

On using Prolog to implement object-oriented databases

PEDRo: a database for storing, searching and disseminating experimental proteomics data

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Pay-as-You-Go Ranking of Schema Mappings Using Query Logs

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Pay-as-you-go Configuration of Entity Resolution

Pay-as-you-go Data Integration: Experiences and Recurring Themes

Pay-as-you-go data integration for linked data

Pay-as-you-go mapping selection in dataspaces

Pedro: a configurable data entry tool for XML.

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Practical Adaptation to Changing Resources in Grid Query Processing

Proactive adaptations in sensor network query processing

Probabilistic adaptive load balancing for parallel queries

Proteomics and Beyond: a report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA.

scientific article published on August 2006

QoS-aware optimization of sensor network queries

Resilient sensor network query processing using logical overlays

article

Resource Scheduling for Parallel Query Processing on Computational Grids

SBRML: a markup language for associating systems biology data with models

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SHDF - A Scalable Hierarchical Distributed Framework for Data Centre Management

SNEE: a query processor for wireless sensor networks

article published in 2010

Self-monitoring query execution for adaptive query processing

article published in 2004

SensorBench

Spatio-Temporal Databases in Practice: Directly Supporting Previously Developed Land Data Using Tripod

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Structure Inference for Linked Data Sources Using Clustering

Structure inference for linked data sources using clustering

Structuring Linked Data Search Results Using Probabilistic Soft Logic

scientific article published at ISWC 2016

Supporting production rules using ECA rules in an object-oriented context

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Systematic integration of experimental data and models in systems biology ⬇️

scientific article (publication date: 29 November 2010)

TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources

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TAMBIS: transparent access to multiple bioinformatics information sources

scientific article (publication date: February 2000)

Targeted Feedback Collection Applied to Multi-Criteria Source Selection

Teallach: a model-based user interface development environment for object databases

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The Design, Implementation and Evaluation of an ODMG Compliant, Parallel Object Database Server

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

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The PSI formal document process and its implementation on the PSI website

scientific article published on July 2007

The Tripod spatio-historical data model

The VADA Architecture for Cost-Effective Data Wrangling

scholarly article published 2017

The design and implementation of OGSA-DQP: A service-based distributed query processor

The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative

scientific article (publication date: September 2010)

Towards Automatic Data Format Transformations: Data Wrangling at Scale

Transparent access to multiple bioinformatics information sources

scientific article (publication date: 2001)

User driven multi-criteria source selection

Utilising the MISM Model Independent Schema Management Platform for Query Evaluation

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Utility Driven Adaptive Work?ow Execution

Utility functions for adaptively executing concurrent workflows

article published in 2010

Utility-driven adaptive query workload execution

Validated cost models for sensor network queries

Verification of Semantic Web Service Annotations Using Ontology-Based Partitioning

scientific article (publication date: July 2014)

Visualizing advanced data modelling constructs

scholarly article by Ghassan al-Qaimari et al published October 1994 in Information and Software Technology

Web Service Grids: an evolutionary approach

article published in 2005

Workflow adaptation as an autonomic computing problem

Workflows for Information Integration in the Life Sciences

e-Fungi: a data resource for comparative analysis of fungal genomes

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