List of works - David M. Ward

" Thermonerobacter thiotrophicus," A Non-phototrophic Member of the With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities

article

'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics

scientific article

16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA ⬇️

scientific article published on April 1, 1991

A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities

scientific article published on 31 December 2019

A natural view of microbial biodiversity within hot spring cyanobacterial mat communities

scientific article

Alkane-1,2-diol-based glycosides and fatty glycosides and wax esters in Roseiflexus castenholzii and hot spring microbial mats

scientific article

All-cis hentriaconta-9,15,22-triene in microbial mats formed by the phototrophic prokaryote Chloroflexus

scientific article published on 01 December 1999

Archaeal and bacterial glycerol dialkyl glycerol tetraether lipids in hot springs of yellowstone national park

scientific article

Assessing soil microbial populations responding to crude-oil amendment at different temperatures using phylogenetic, functional gene (alkB) and physiological analyses.

scientific article

Automated data extraction from in situ protein-stable isotope probing studies

scientific article

Autotrophy of green non-sulphur bacteria in hot spring microbial mats: biological explanations for isotopically heavy organic carbon in the geological record.

scientific article published in August 2000

Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures

scientific article published on February 1997

Biogeography of American Northwest Hot Spring A/B'-Lineage Synechococcus Populations

scientific article published on 24 February 2020

Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium

scientific article (publication date: 27 July 2007)

Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.

scientific article

Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

scientific article published on 3 June 2013

Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats

scientific article

Competitive fitness of isolates enriched on phenanthrene sorbed to model phases

scientific article published on 27 April 2007

Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll‐based photoheterotroph belonging to the phylum Acidobacteria ⬇️

scientific article published on September 27, 2011

Compound-specific isotopic fractionation patterns suggest different carbon metabolisms among Chloroflexus-like bacteria in hot-spring microbial mats

scientific article

Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats

scientific article

Cultivation of aerobic chemoorganotrophic proteobacteria and gram-positive bacteria from a hot spring microbial mat.

scientific article

Cyanobacterial ecotypes in different optical microenvironments of a 68 degrees C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation

scientific article

Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function

scientific article published on November 2006

Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community.

scientific article

Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat.

scientific article

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

scientific article

Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park

scientific article

Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats.

scientific article

Diverse Thermus species inhabit a single hot spring microbial mat

scientific article published on 01 January 1995

Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp.

scientific article

Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park

scientific article published in October 2005

Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi).

scientific article

Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A.

scientific article

Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park

scientific article

Effects of petroleum mixture types on soil bacterial population dynamics associated with the biodegradation of hydrocarbons in soil environments

scientific article published on 5 April 2013

Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat

scientific article

Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences

scientific article

Expansion of the global RNA virome reveals diverse clades of bacteriophages

scientific article published in October 2022

Fine-scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park

scientific article published on 2 September 2011

Geographical isolation in hot spring cyanobacteria

scientific article published in August 2003

Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat.

scientific article

Identification and distribution of high-abundance proteins in the octopus spring microbial mat community

scientific article

Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA).

scientific article published in February 2007

In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle

scientific article

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.

scientific article

In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats

scholarly article

Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat.

scientific article

Light-induced motility of thermophilic Synechococcus isolates from Octopus Spring, Yellowstone National Park

scientific article

Metagenomic Approaches for the Identification of Microbial Species

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat ⬇️

scientific article published on June 23, 2011

Microbial population dynamics associated with crude-oil biodegradation in diverse soils

scientific article published on September 2006

Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat

scientific article (publication date: August 1984)

Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceae-related bacteria in hot spring microbial mats

scientific article

Oxygen Microelectrode That Is Insensitive to Medium Chemical Composition: Use in an Acid Microbial Mat Dominated by Cyanidium caldarium

scientific article published on March 1983

Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat

scientific article

Photosynthate partitioning and fermentation in hot spring microbial mat communities

scientific article

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses

scientific article

Population structure and physiological changes within a hot spring microbial mat community following disturbance.

scientific article

Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms.

scientific article

Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat.

scientific article published in January 2015

Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat.

scientific article

Relationship between microorganisms inhabiting alkaline siliceous hot spring mat communities and the overflowing water

scientific article published on 25 September 2020

Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis

scientific article

Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat

scientific article published on 18 March 2020

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

scientific article (publication date: September 2013)

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing

scientific article published on 17 June 2016

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses

scientific article

The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park

scientific article

The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light

scientific article published on 29 June 2015

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

scientific article published on 23 June 2015

Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat ⬇️

scientific article published on December 1, 1992

List of works by David M. Ward

" Thermonerobacter thiotrophicus," A Non-phototrophic Member of the With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities

'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics

16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA ⬇️

A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities

A natural view of microbial biodiversity within hot spring cyanobacterial mat communities

Alkane-1,2-diol-based glycosides and fatty glycosides and wax esters in Roseiflexus castenholzii and hot spring microbial mats

All-cis hentriaconta-9,15,22-triene in microbial mats formed by the phototrophic prokaryote Chloroflexus

Archaeal and bacterial glycerol dialkyl glycerol tetraether lipids in hot springs of yellowstone national park

Assessing soil microbial populations responding to crude-oil amendment at different temperatures using phylogenetic, functional gene (alkB) and physiological analyses.

Automated data extraction from in situ protein-stable isotope probing studies

Autotrophy of green non-sulphur bacteria in hot spring microbial mats: biological explanations for isotopically heavy organic carbon in the geological record.

Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures

Biogeography of American Northwest Hot Spring A/B'-Lineage Synechococcus Populations

Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium

Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.

Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats

Competitive fitness of isolates enriched on phenanthrene sorbed to model phases

Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll‐based photoheterotroph belonging to the phylum Acidobacteria ⬇️

Compound-specific isotopic fractionation patterns suggest different carbon metabolisms among Chloroflexus-like bacteria in hot-spring microbial mats

Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats

Cultivation of aerobic chemoorganotrophic proteobacteria and gram-positive bacteria from a hot spring microbial mat.

Cyanobacterial ecotypes in different optical microenvironments of a 68 degrees C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation

Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function

Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community.

Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat.

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park

Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats.

Diverse Thermus species inhabit a single hot spring microbial mat

Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp.

Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park

Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi).

Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A.

Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park

Effects of petroleum mixture types on soil bacterial population dynamics associated with the biodegradation of hydrocarbons in soil environments

Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat

Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences

Expansion of the global RNA virome reveals diverse clades of bacteriophages

Fine-scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park

Geographical isolation in hot spring cyanobacteria

Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat.

Identification and distribution of high-abundance proteins in the octopus spring microbial mat community

Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA).

In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.

In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats

Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat.

Light-induced motility of thermophilic Synechococcus isolates from Octopus Spring, Yellowstone National Park

Metagenomic Approaches for the Identification of Microbial Species

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat ⬇️

Microbial population dynamics associated with crude-oil biodegradation in diverse soils

Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat

Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceae-related bacteria in hot spring microbial mats

Oxygen Microelectrode That Is Insensitive to Medium Chemical Composition: Use in an Acid Microbial Mat Dominated by Cyanidium caldarium

Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat

Photosynthate partitioning and fermentation in hot spring microbial mat communities

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses

Population structure and physiological changes within a hot spring microbial mat community following disturbance.

Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms.

Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat.

Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat.

Relationship between microorganisms inhabiting alkaline siliceous hot spring mat communities and the overflowing water

Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis

Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses

The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park

The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat ⬇️