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List of works by Tom Battin

A Tropical Cocktail of Organic Matter Sources: Variability in Supraglacial and Glacier Outflow Dissolved Organic Matter Composition and Age Across the Ecuadorian Andes

scientific article published in 2023

A mixing model analysis of stream solute dynamics and the contribution of a hyporheic zone to ecosystem function*

scientific article published in 2003

Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms

scientific article published on 15 May 2015

Anthropogenic subsidies alter stream consumer-resource stoichiometry, biodiversity, and food chains

scientific article

Architectural differentiation reflects bacterial community structure in stream biofilms

scientific article published on 2 July 2009

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics

scientific article

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

scientific article published on 21 August 2019

Bacterial community composition of stream biofilms in spatially variable-flow environments

scientific article

Benchmarking protocols for the metagenomic analysis of stream biofilm viromes

scientific article published on 20 December 2019

Benthic Biofilms in Glacier-Fed Streams from Scandinavia to the Himalayas Host Distinct Bacterial Communities Compared with the Streamwater

scientific article published in 2022

Biophysical controls on cluster dynamics and architectural differentiation of microbial biofilms in contrasting flow environments

scientific article

Biophysical controls on community succession in stream biofilms.

scientific article published on 8 June 2007

Biophysical controls on organic carbon fluxes in fluvial networks

scientific article published on 20 January 2008

Chartering new waters of biofilm ecology and evolution

scientific article published on 25 March 2015

Climate-Induced Changes in Spring Snowmelt Impact Ecosystem Metabolism and Carbon Fluxes in an Alpine Stream Network

article

Colonization of freshwater biofilms by nitrifying bacteria from activated sludge

scientific article published on 2 April 2013

Combining Fluidic Devices with Microscopy and Flow Cytometry to Study Microbial Transport in Porous Media Across Spatial Scales

scientific article published on 25 November 2020

Construction of self-transmissible green fluorescent protein-based biosensor plasmids and their use for identification of N-acyl homoserine-producing bacteria in lake sediments.

scientific article

Contributions of microbial biofilms to ecosystem processes in stream mesocosms

scientific article

Coupling virtual watersheds with ecosystem services assessment: a 21st century platform to support river research and management ⬇️

scholarly article by José Barquín et al published 10 September 2015 in WIREs. Water

Drivers of bacterial colonization patterns in stream biofilms

scientific article

Ecohydrological interfaces as hot spots of ecosystem processes

article published in 2017

Ecological strategies and metabolic trade-offs of complex environmental biofilms

scientific article published on 25 September 2017

Ecosystem respiration increases with biofilm growth and bed forms: Flume measurements with resazurin

Effects of current velocity on the nascent architecture of stream microbial biofilms

scientific article

Effects of streambed morphology and biofilm growth on the transient storage of solutes.

scientific article published in October 2009

Environmental heterogeneity promotes spatial resilience of phototrophic biofilms in streambeds

article

Erratum: Biophysical controls on organic carbon fluxes in fluvial networks

scholarly article

Flow history explains temporal and spatial variation of carbon fractionation in stream periphyton

scientific article

Fluvial network organization imprints on microbial co-occurrence networks

scientific article

Functional and structural responses of hyporheic biofilms to varying sources of dissolved organic matter

scientific article published on 25 July 2014

Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams

scientific article published on 20 April 2022

Glacier shrinkage driving global changes in downstream systems. ⬇️

scientific article

Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function

scientific article published in 2022

Global carbon dioxide efflux from rivers enhanced by high nocturnal emissions

Gravel bars are sites of increased CO2 outgassing in stream corridors.

scientific article published on 31 October 2017

Gravel pit lake ecosystems reduce nitrate and phosphate concentrations in the outflowing groundwater

scientific article published on 15 February 2012

Greenhouse Gas Emissions from Freshwater Reservoirs: What Does the Atmosphere See?

scientific article published on 01 January 2018

Headwaters are critical reservoirs of microbial diversity for fluvial networks.

scientific article published on 2 October 2013

High light intensity mediates a shift from allochthonous to autochthonous carbon use in phototrophic stream biofilms

scientific article

High‐Resolution Spatial Sampling Identifies Groundwater as Driver of CO<sub>2</sub> Dynamics in an Alpine Stream Network

scientific article published in 2019

Hydrodynamics is a major determinant of streambed biofilm activity: From the sediment to the reach scale

scientific article published on 02 June 2010

Hydrologic controls on basin-scale distribution of benthic invertebrates

Hydrologic variability affects invertebrate grazing on phototrophic biofilms in stream microcosms

scientific article

Hydrology controls dissolved organic matter export and composition in an Alpine stream and its hyporheic zone.

scientific article published on December 2015

Key rules of life and the fading cryosphere: impacts in alpine lakes and streams

scientific article published on 23 September 2020

Light and hydrologic variability as drivers of stream biofilm dynamics in a flume experiment

Light availability affects stream biofilm bacterial community composition and function, but not diversity.

scientific article published on 27 May 2015

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels.

scientific article published on 21 April 2018

Looking inside the box: using Raman microspectroscopy to deconstruct microbial biomass stoichiometry one cell at a time

scientific article

Macroinvertebrate community traits and nitrate removal in stream sediments

scholarly article

Metabolism of mineral-sorbed organic matter and microbial lifestyles in fluvial ecosystems

article

Microbial Ecology of Methanotrophy in Streams Along a Gradient of CH4 Availability

scientific article published on 14 May 2020

Microbial biodiversity in glacier-fed streams.

scientific article

Microbial degradation of terrigenous dissolved organic matter and potential consequences for carbon cycling in brown-water streams.

scientific article published on 15 May 2014

Microbial landscapes: new paths to biofilm research.

scientific article published in January 2007

Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome

scientific article published in 2021

Modeling the coupled dynamics of stream metabolism and microbial biomass

scientific article published in 2020

Modelling the effects of dispersal mechanisms and hydrodynamic regimes upon the structure of microbial communities within fluvial biofilms ⬇️

scientific article published on December 13, 2012

Nanostructured TiO2: transport behavior and effects on aquatic microbial communities under environmental conditions

scientific article published in November 2009

Nitrogen processing and the role of epilithic biofilms downstream of a wastewater treatment plant

article

No evidence of aquatic priming effects in hyporheic zone microcosms

scientific article published on 5 June 2014

Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams

scientific article published on 27 October 2020

Optimization of Biomass Composition Explains Microbial Growth-Stoichiometry Relationships

article

Patterns and Drivers of Extracellular Enzyme Activity in New Zealand Glacier-Fed Streams

scientific article published on 19 November 2020

Physical heterogeneity increases biofilm resource use and its molecular diversity in stream mesocosms

scientific article

Positive and negative impacts of five Austrian gravel pit lakes on groundwater quality

article

Preferential retention of algal carbon in benthic invertebrates: Stable isotope and fatty acid evidence from an outdoor flume experiment

scientific article published on 02 March 2020

Proteome analysis of fungal and bacterial involvement in leaf litter decomposition.

scientific article published in May 2010

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

scientific article published on 18 February 2014

Regimes of primary production and their drivers in Alpine streams

scientific article

River ecosystem metabolism and carbon biogeochemistry in a changing world

scientific article published in 2023

Scales and drivers of temporalpCO2dynamics in an Alpine stream

scholarly article

Sources, Transformation, and Fate of Dissolved Organic Matter in the Gravel Bar of a Prealpine Stream

scientific article published in 2020

Spatial patterns of benthic biofilm diversity among streams draining proglacial floodplains

scientific article published in 2022

The boundless carbon cycle

The ecological coherence of high bacterial taxonomic ranks

scientific article published in July 2010

The ecology and biogeochemistry of stream biofilms

scientific article

The microbiome of cryospheric ecosystems

scientific article published on 01 January 2022

The odonate mating system, communication, and sexual selection: A review

article

Trait-specific dispersal of bacteria in heterogeneous porous environments: from pore to porous medium scale

scientific article published on 25 March 2020

Transport and Metabolic Fate of Sewage Particles in a Recipient Stream

scientific article published on 09 August 2005

Travel Time and Source Variation Explain the Molecular Transformation of Dissolved Organic Matter in an Alpine Stream Network

scientific article published in 2020

Unexpected large evasion fluxes of carbon dioxide from turbulent streams draining the world's mountains

scientific article published on 25 October 2019

Unexpectedly minor nitrous oxide emissions from fluvial networks draining permafrost catchments of the East Qinghai-Tibet Plateau

scientific article published on 17 February 2022

Unraveling assembly of stream biofilm communities

scientific article published on 12 January 2012

Unraveling the biophysical underpinnings to the success of multispecies biofilms in porous environments

scientific article published on 04 March 2019

Voronoi tessellation captures very early clustering of single primary cells as induced by interactions in nascent biofilms

scientific article

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