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List of works by Bertil Schmidt

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware ⬇️

scientific article published on November 1, 2011

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions ⬇️

scientific article published on April 4, 2013

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments ⬇️

scientific article published on December 23, 2010

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI ⬇️

scientific article published on March 29, 2011

DySC: software for greedy clustering of 16S rRNA reads ⬇️

scientific article published on June 23, 2012

Long read alignment based on maximal exact match seeds ⬇️

scientific article published on September 15, 2012

Massively Parallel Inverse Block-sorting Transforms for bzip2 Decompression on GPUs

scientific article published on 08 August 2024

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data ⬇️

scientific article published on November 29, 2012

Parallel mutual information estimation for inferring gene regulatory networks on GPUs ⬇️

scientific article (publication date: 15 June 2011)

Parallelized short read assembly of large genomes using de Bruijn graphs ⬇️

scientific article published on August 25, 2011

RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms

scientific article published on 04 November 2022

Scalable GPU-Enabled Creation of Three Dimensional Weather Fronts

scientific article published on 15 May 2024

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