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List of works by David B. Jaffe

A genome-wide map of diversity in Plasmodium falciparum

scientific article published on 10 December 2006

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

ALLPATHS: de novo assembly of whole-genome shotgun microreads

scientific article

ARACHNE: a whole-genome shotgun assembler

scientific article

An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing

scientific article (publication date: 29 March 2005)

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

scientific article published in June 2007

Analysis of the DNA sequence and duplication history of human chromosome 15

scientific article

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi

scientific article published on August 2005

Assisted assembly: how to improve a de novo genome assembly by using related species

scientific article (publication date: 2009)

Comprehensive variation discovery in single human genomes

scientific article

DNA sequence and analysis of human chromosome 18

scientific article

DNA sequence and analysis of human chromosome 8

scientific article

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

scientific article

Erratum: Corrigendum: DNA sequence and analysis of human chromosome 18

scientific article published in Nature

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

scientific article

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

scientific article

Genome sequence, comparative analysis and haplotype structure of the domestic dog

scientific article

Genome-scale DNA methylation maps of pluripotent and differentiated cells

scientific article

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

scientific article

High-resolution mapping of copy-number alterations with massively parallel sequencing

scientific article

Human chromosome 11 DNA sequence and analysis including novel gene identification

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Initial sequencing and comparative analysis of the mouse genome

scientific article

Integrative analysis of the melanoma transcriptome

scientific article

Quality scores and SNP detection in sequencing-by-synthesis systems ⬇️

scientific article published on 22 January 2008

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

scientific article

Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing

scientific article published on 14 December 2008

The African coelacanth genome provides insights into tetrapod evolution

scientific article

The genome sequence of the filamentous fungus Neurospora crassa

scientific article

The genomic basis of adaptive evolution in threespine sticklebacks

scientific article

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

scientific article

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