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List of works by Samuel Dequiedt

A coordinated set of ecosystem research platforms open to international research in ecotoxicology, AnaEE-France

scientific article published on 29 August 2015

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

scientific article published on 31 October 2020

Biogeographical patterns of soil bacterial communities

scientific article

Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity

scholarly article by Battle Karimi et al published 7 March 2019 in Scientific Reports

Biogeography of Soil Microbial Communities: A Review and a Description of the Ongoing French National Initiative

article

Biogeography of soil bacteria and archaea across France.

scientific article

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

article

Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape

scientific article published on 28 April 2015

Correction: Mapping and predictive variations of soil bacterial richness across France

scientific article published on 18 December 2017

Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure

scientific article

FT-IR spectroscopy: A powerful tool for studying the inter- and intraspecific biodiversity of cultivable non-Saccharomyces yeasts isolated from grape must.

scientific article published on 11 December 2015

GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity

scientific article published in January 2016

High microbial diversity promotes soil ecosystem functioning.

scientific article published on 16 February 2018

Inferring microbiota functions from taxonomic genes: a review

scientific article published on 13 January 2022

Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil

scientific article published on 23 June 2015

Legacy of land-cover changes on soil microbiology in Burgundy vineyards (Pernand-Vergelesses, France)

scientific article published in 2022

Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment ⬇️

scientific article

Mapping and determinism of soil microbial community distribution across an agricultural landscape

scientific article published on April 2015

Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition.

scientific article

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure

scientific article

Nation-wide study of the occurrence of Listeria monocytogenes in French soils using culture-based and molecular detection methods ⬇️

scientific article published on April 6, 2013

Platform GenoSol: a new tool for conserving and exploring soil microbial diversity

scientific article published on 03 March 2009

Profiles of volatile organic compound emissions from soils amended with organic waste products

scientific article published on 04 May 2018

ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition ⬇️

scholarly article

Reduced microbial diversity induces larger volatile organic compound emissions from soils

scientific article published on 08 April 2020

Response of soil bacterial community structure to successive perturbations of different types and intensities

article

Similar processes but different environmental filters for soil bacterial and fungal community composition turnover on a broad spatial scale.

scientific article

Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar.

scientific article published on 17 October 2017

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

scientific article published in Scientific Reports

The diversity of soil microbial communities matters when legumes face drought

scientific article published on 03 February 2020

Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale

scientific article published on 13 June 2018

Urban land uses shape soil microbial abundance and diversity

scientific article published in 2023

Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.

scientific article

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