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List of works by Jan Ellenberg

4D imaging to assay complex dynamics in live specimens

scientific article published on September 2003

A Nup133-dependent NPC-anchored network tethers centrosomes to the nuclear envelope in prophase.

scientific article

A bromodomain protein, MCAP, associates with mitotic chromosomes and affects G(2)-to-M transition

scientific article

A call for public archives for biological image data

scientific article published on 01 November 2018

A cell-based model system links chromothripsis with hyperploidy

scientific article published on 28 September 2015

A contractile nuclear actin network drives chromosome congression in oocytes

scientific article published on 13 July 2005

A fractal model for nuclear organization: current evidence and biological implications

scientific article

A new model for asymmetric spindle positioning in mouse oocytes

scientific article

A new model for nuclear envelope breakdown.

scientific article

A proposal for validation of antibodies.

scientific article published on 5 September 2016

A protocol for the systematic and quantitative measurement of protein-lipid interactions using the liposome-microarray-based assay

scientific article published on 5 May 2016

A quantitative liposome microarray to systematically characterize protein-lipid interactions

scientific article published on 24 November 2013

A quantitative map of human Condensins provides new insights into mitotic chromosome architecture

scientific article published on 9 April 2018

A quantitative map of human Condensins provides new insights into mitotic chromosome architecture

A system for imaging the regulatory noncoding Xist RNA in living mouse embryonic stem cells.

scientific article

ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores

scientific article

Absolute quantification of cohesin, CTCF and their regulators in human cells

scientific article published on 17 June 2019

An RNAi screening platform to identify secretion machinery in mammalian cells

An actin-dependent spindle position checkpoint ensures the asymmetric division in mouse oocytes

retracted paper

An evolutionarily conserved NPC subcomplex, which redistributes in part to kinetochores in mammalian cells

scientific article

An experimental and computational framework to build a dynamic protein atlas of human cell division

Author Correction: Sister chromatid resolution is an intrinsic part of chromosome organization in prophase

scientific article published on 12 February 2018

Automated analysis of the mitotic phases of human cells in 3D fluorescence microscopy image sequences

article

Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time

scientific article

Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging

scientific article

Automatic identification of subcellular phenotypes on human cell arrays

scientific article published on June 2004

Automatic quantification of microtubule dynamics enables RNAi-screening of new mitotic spindle regulators

scientific article

Automatic real-time three-dimensional cell tracking by fluorescence microscopy.

scientific article

CTCF, WAPL and PDS5 proteins control the formation of TADs and loops by cohesin

Calcium rises locally trigger focal adhesion disassembly and enhance residency of focal adhesion kinase at focal adhesions

scientific article published on 21 April 2004

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging.

scientific article

Chemogenetic Control of Nanobodies

scientific article published on 17 February 2020

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.

scientific article published on 9 March 2018

ChromoTrace: Reconstruction of 3D Chromosome Configurations by Super-Resolution Microscopy

Chromophore-assisted laser inactivation of alpha- and gamma-tubulin SNAP-tag fusion proteins inside living cells

scientific article

Chromosomal association of Ran during meiotic and mitotic divisions

scientific article published on December 2002

Cloning and electrophysiological analysis of KST1, an inward rectifying K+ channel expressed in potato guard cells.

scientific article published on June 1995

Comparative assessment of fluorescent transgene methods for quantitative imaging in human cells

scientific article

Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences

Complete kinetochore tracking reveals error-prone homologous chromosome biorientation in mammalian oocytes

scientific article

Condensin I stabilizes chromosomes mechanically through a dynamic interaction in live cells

scientific article

Correction: Correlative live and super-resolution imaging reveals the dynamic structure of replication domains

scientific article published on 22 August 2018

Correlative live and super-resolution imaging reveals the dynamic structure of replication domains

scientific article published on 23 March 2018

Correlative live and super-resolution imaging reveals the dynamic structure of replication domains

scholarly article published 17 September 2017

Crowded chromatin is not sufficient for heterochromatin formation and not required for its maintenance

scientific article

Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling

scientific article

Determining cellular CTCF and cohesin abundances to constrain 3D genome models

scientific article published on 17 June 2019

Direct Visualization of Single Nuclear Pore Complex Proteins Using Genetically-Encoded Probes for DNA-PAINT

scientific article published on 21 August 2019

Dissecting the contribution of diffusion and interactions to the mobility of nuclear proteins

scientific article published on 30 December 2005

Distinct functions of condensin I and II in mitotic chromosome assembly

scientific article

Dual spindle formation in zygotes keeps parental genomes apart in early mammalian embryos

Dual-colour imaging with GFP variants

scientific article

Dual-spindle formation in zygotes keeps parental genomes apart in early mammalian embryos.

scientific article

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay

scientific article

Dynamics and mobility of nuclear envelope proteins in interphase and mitotic cells revealed by green fluorescent protein chimeras

scientific article

Dynamics and retention of misfolded proteins in native ER membranes

article

Dynamics of chromosome positioning during the cell cycle

scientific article published on December 2003

Dynamics of nuclear pore complex organization through the cell cycle.

scientific article published in June 2004

EGF-induced centrosome separation promotes mitotic progression and cell survival

scientific article

EML3 is a nuclear microtubule-binding protein required for the correct alignment of chromosomes in metaphase

scientific article

Erratum: Visualization of image data from cells to organisms

scholarly article by Thomas Walter et al published June 2010 in Nature Methods

Experimental and computational framework for a dynamic protein atlas of human cell division.

scientific article

FRET analyses of the U2AF complex localize the U2AF35/U2AF65 interaction in vivo and reveal a novel self-interaction of U2AF35.

scientific article

FUN-L: gene prioritization for RNAi screens

scientific article published on 08 February 2015

Fast, robust and precise 3D localization for arbitrary point spread functions

Fluorescence perturbation techniques to study mobility and molecular dynamics of proteins in live cells: FRAP, photoactivation, photoconversion, and FLIP.

scientific article

Fluorophores for live cell imaging of AGT fusion proteins across the visible spectrum

scientific article published on August 2006

Formation of the nuclear envelope permeability barrier studied by sequential photoswitching and flux analysis

scientific article published on October 2009

Four-dimensional imaging and quantitative reconstruction to analyse complex spatiotemporal processes in live cells

scientific article

GTSE1 is a microtubule plus-end tracking protein that regulates EB1-dependent cell migration

scientific article (publication date: 2012)

Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency

scientific article published on 07 November 2018

Generation and validation of homozygous fluorescent knock-in cells using CRISPR–Cas9 genome editing

scientific article published on 24 May 2018

Generation and validation of homozygous fluorescent knock-in cells using genome editing

Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway

Global chromosome positions are transmitted through mitosis in mammalian cells

scientific article published in March 2003

Golgi membranes are absorbed into and reemerge from the ER during mitosis

scientific article

High-throughput RNAi screening by time-lapse imaging of live human cells

scientific article

High-throughput fluorescence correlation spectroscopy enables analysis of proteome dynamics in living cells

scientific article

High-throughput fluorescence microscopy for systems biology

scientific article published on 19 July 2006

High-throughput microscopy using live mammalian cells

scientific article published on July 2010

Histone H3 phosphorylation during Xenopus oocyte maturation: regulation by the MAP kinase/p90Rsk pathway and uncoupling from DNA condensation.

scientific article

Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei

scientific article

Imaging the assembly, structure, and function of the nuclear pore inside cells.

scientific article

Integrating Imaging and Omics: Computational Methods and Challenges

scientific article published in 2019

Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

scientific article

Intracellular trafficking of emerin, the Emery-Dreifuss muscular dystrophy protein

scientific article published on 01 June 1999

Intracellular transport by an anchored homogeneously contracting F-actin meshwork.

scientific article published in April 2011

Inverted light-sheet microscope for imaging mouse pre-implantation development

scientific article published on 14 December 2015

Ki-67 acts as a biological surfactant to disperse mitotic chromosomes

scientific journal article

Kinetic analysis of secretory protein traffic and characterization of golgi to plasma membrane transport intermediates in living cells

scientific article

LAP2alpha and BAF transiently localize to telomeres and specific regions on chromatin during nuclear assembly

scientific journal article

LambdaN-GFP: an RNA reporter system for live-cell imaging

scientific article published on July 2007

LifeTime and improving European healthcare through cell-based interceptive medicine

scientific article published on 07 September 2020

Light microscopy of echinoderm embryos.

scientific article

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains

scientific article published on 19 August 2015

Live imaging and modeling of inner nuclear membrane targeting reveals its molecular requirements in mammalian cells

scientific article

Live imaging of cell division in preimplantation mouse embryos using inverted light-sheet microscopy

scientific article published on 26 April 2018

Live imaging of single nuclear pores reveals unique assembly kinetics and mechanism in interphase ⬇️

scientific article published on September 27, 2010

Live-cell imaging reveals a stable cohesin-chromatin interaction after but not before DNA replication

scientific article published on August 2006

MAP1S controls microtubule stability throughout the cell cycle in human cells

scientific article published on 9 October 2014

MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells

scientific article published on 13 January 2020

Mapping the dynamic organization of the nuclear pore complex inside single living cells.

scientific article published on 24 October 2004

Maximal chromosome compaction occurs by axial shortening in anaphase and depends on Aurora kinase

scientific article published on 10 June 2007

Measuring structural dynamics of chromosomes in living cells by fluorescence microscopy

scientific article published on February 2007

Mechanisms of HsSAS-6 assembly promoting centriole formation in human cells

scientific article published on March 2014

Mechanisms of nuclear pore complex assembly - two different ways of building one molecular machine

scientific article published on 8 November 2017

Minimizing the risk of reporting false positives in large-scale RNAi screens

article

Mitotic lamin disassembly is triggered by lipid-mediated signaling

scientific article

Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging

scientific article published on 20 August 2018

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

scientific article

Monitoring the permeability of the nuclear envelope during the cell cycle.

scientific article published in January 2006

Multiple requirements of PLK1 during mouse oocyte maturation

scientific article

Multivariate Control of Transcript to Protein Variability in Single Mammalian Cells

article

Myo19 ensures symmetric partitioning of mitochondria and coupling of mitochondrial segregation to cell division.

scientific article

Mysteries in embryonic development: How can errors arise so frequently at the beginning of mammalian life?

article

NuSAP, a mitotic RanGTP target that stabilizes and cross-links microtubules

scientific article

NuSAP, a novel microtubule-associated protein involved in mitotic spindle organization

scientific article

Nuclear actin: a lack of export allows formation of filaments

scientific article published in May 2006

Nuclear envelope

Nuclear envelope breakdown in starfish oocytes proceeds by partial NPC disassembly followed by a rapidly spreading fenestration of nuclear membranes.

scientific article published on 24 March 2003

Nuclear envelope breakdown proceeds by microtubule-induced tearing of the lamina

scientific article published on January 2002

Nuclear envelope dynamics in oocytes: from germinal vesicle breakdown to mitosis.

scientific article

Nuclear import and assembly of influenza A virus RNA polymerase studied in live cells by fluorescence cross-correlation spectroscopy.

scientific article

Nuclear membrane dynamics and reassembly in living cells: targeting of an inner nuclear membrane protein in interphase and mitosis

scientific article (publication date: 22 September 1997)

Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope.

scientific article published on 15 September 2016

Nuclear pore complex assembly through the cell cycle: regulation and membrane organization

scientific article published on 06 March 2008

Nuclear pore complexes form immobile networks and have a very low turnover in live mammalian cells

scientific article

Nuclear pore scaffold structure analyzed by super-resolution microscopy and particle averaging.

scientific article published on 11 July 2013

Nuclear pores as versatile reference standards for quantitative superresolution microscopy

scientific article published on 27 September 2019

Nucleocytoplasmic transport: Diffusion channel or phase transition?

scientific article published on 01 July 2001

Nucleoporin NUP153 guards genome integrity by promoting nuclear import of 53BP1

scientific article published on 11 November 2011

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

scientific article

Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of SRC kinases

scientific article

Photoactivation of silicon rhodamines via a light-induced protonation

scientific article published on 08 October 2019

Postmitotic Nuclear Pore Assembly Proceeds By Radial Dilation Of Small ER Membrane Openings

Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings.

scientific article published on 27 November 2017

Profiling DNA damage response following mitotic perturbations

scientific article published on 15 December 2016

Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine

scientific article published on 17 March 2021

Publisher Correction: Nuclear pores as versatile reference standards for quantitative superresolution microscopy

scientific article published on 01 December 2019

Quantitative kinetic analysis of nucleolar breakdown and reassembly during mitosis in live human cells

scientific article published on 7 September 2004

Quantitative live and super-resolution microscopy of mitotic chromosomes

scientific article published on 24 April 2018

Quantitative mapping of fluorescently tagged cellular proteins using FCS-calibrated four dimensional imaging

Quantitative mapping of fluorescently tagged cellular proteins using FCS-calibrated four-dimensional imaging

scientific article published on 24 May 2018

REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology

scientific article published on 21 May 2021

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins

scientific article

RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear mRNA export.

scientific article published on February 2004

Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement. ⬇️

scientific article published in October 2017

Real-time 3D single-molecule localization using experimental point spread functions

article by Yiming Li et al published May 2018 in Nature Methods

Real-time chromatin dynamics at the single gene level during transcription activation

article

Regulation of sister chromatid cohesion between chromosome arms.

scientific article

Remodelling the walls of the nucleus

scientific article

Resolution of chiasmata in oocytes requires separase-mediated proteolysis

scientific article published in July 2006

Retraction: An actin-dependent spindle position checkpoint ensures the asymmetric division in mouse oocytes

scientific article published in Nature Communications

Retrograde transport of Golgi-localized proteins to the ER.

scientific article

Reverse transfection on cell arrays for high content screening microscopy

scientific article published in January 2007

Ribonucleoprotein-dependent localization of the yeast class V myosin Myo4p.

scientific article published on 23 December 2002

Roles of polo-like kinase 1 in the assembly of functional mitotic spindles

scientific article published in October 2004

SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs.

scientific article

Self-organization of MTOCs replaces centrosome function during acentrosomal spindle assembly in live mouse oocytes

scientific article published in August 2007

Sister chromatid resolution is an intrinsic part of chromosome organization in prophase.

scientific article published on 2 May 2016

Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit

scientific article

Sun1 forms immobile macromolecular assemblies at the nuclear envelope

scientific article

Super-resolution spatial proximity detection with proximity-PAINT

scientific article published on 16 September 2020

Systematic analysis of human protein complexes identifies chromosome segregation proteins

scientific article

Systematic kinetic analysis of mitotic dis- and reassembly of the nuclear pore in living cells.

scientific article

The cellular microscopy phenotype ontology

scientific article published on 18 May 2016

The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis

scientific article

The protein phosphatase 1 regulator PNUTS is a new component of the DNA damage response.

scientific article

The quantitative proteome of a human cell line.

scientific article

The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion

scientific article published on 21 June 2018

The transition from meiotic to mitotic spindle assembly is gradual during early mammalian development

scientific article

The transmembrane domain of a carboxyl-terminal anchored protein determines localization to the endoplasmic reticulum

scientific article published on 01 January 1997

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

scientific article published on 7 December 2017

Two-color green fluorescent protein time-lapse imaging

scientific article published in November 1998

Visualization of image data from cells to organisms

scientific article

Wapl is an essential regulator of chromatin structure and chromosome segregation

scientific journal article

Work flow for multiplexing siRNA assays by solid-phase reverse transfection in multiwell plates

scientific article

ZAP-70 association with T cell receptor zeta (TCRzeta): fluorescence imaging of dynamic changes upon cellular stimulation

scientific article published in November 1998

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