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List of works by Olivier Bouchez

A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull

scientific article

A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale

scientific article published on 10 July 2018

A High-Quality Grapevine Downy Mildew Genome Assembly Reveals Rapidly Evolving and Lineage-Specific Putative Host Adaptation Genes

scientific article published on 01 March 2019

A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model.

scientific article published on 11 December 2015

A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes

article

A medium density genetic map and QTL for behavioral and production traits in Japanese quail

scientific article

A secreted WY-domain-containing protein present in European isolates of the oomycete Plasmopara viticola induces cell death in grapevine and tobacco species

scientific article published on 29 July 2019

A tunable filter for high molecular weight DNA selection and linked-read sequencing

scientific article published on 04 December 2019

Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach

scientific article published on 10 April 2017

An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

scientific article published in 2022

An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss

scientific article published on 21 June 2012

An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog

scientific article published on 19 December 2013

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

scientific article published on 01 January 2018

Autosomal and Mitochondrial Adaptation Following Admixture: A Case Study on the Honeybees of Reunion Island.

scientific article published on 29 November 2017

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

scientific article published on 27 January 2020

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

scientific article

Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones

scientific article published on 11 June 2022

Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat.

scientific article published on 15 May 2015

Convergent rewiring of the virulence regulatory network promotes adaptation of Ralstonia solanacearum on resistant tomato

scientific article published on 11 December 2020

Correction: Design and Characterization of a 52K SNP Chip for Goats

scientific article published on 24 March 2016

Deciphering cork formation in Quercus suber.

scientific article

Design and characterization of a 52K SNP chip for goats

scientific article published on 22 January 2014

Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits

scientific article published on 10 May 2019

Diversity and spatiotemporal dynamics of bacterial communities: physicochemical and other drivers along an acid mine drainage

scientific article

Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France.

scientific article published on 5 October 2017

Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota

scientific article published on 15 May 2020

Early dispersal of domestic horses into the Great Plains and northern Rockies

scientific article published on 31 March 2023

Ethylene is one of the key elements for cell death and defense response control in the Arabidopsis lesion mimic mutant vad1

scientific article published on 24 August 2007

Field Monitoring of Avian Influenza Viruses: Whole-Genome Sequencing and Tracking of Neuraminidase Evolution Using 454 Pyrosequencing ⬇️

scientific article published on June 20, 2012

Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail

scientific article

Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

scientific article published on 29 June 2018

Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing

scientific article published on 19 October 2020

Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity

scientific article published on 05 March 2020

Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola)

scientific article published on 13 September 2020

Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep

scientific article

Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation.

scientific article published on 18 April 2018

Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola

scientific article published on 07 August 2020

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

scientific article published on 30 May 2018

Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs

scientific article published on 18 March 2021

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

scientific article published on 04 September 2017

Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite Pythium oligandrum

scientific article published on 06 February 2020

Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning

scientific article published on 19 February 2020

Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota

scientific article published on 22 November 2011

Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets

scientific article published on 8 October 2012

Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics

scientific article

Modeling Protein Destiny in Developing Fruit

scientific article published on 23 April 2019

Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing

scientific article

One complete and three draft genome sequences of four strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

Overfeeding and genetics affect the composition of intestinal microbiota in Anas platyrhynchos (Pekin) and Cairina moschata (Muscovy) ducks

scientific article

Phyllosphere Colonization by a Soil Streptomyces sp. Promotes Plant Defense Responses Against Fungal Infection

scientific article published on 04 December 2019

Population genomics of apricots unravels domestication history and adaptive events

scientific article published on 25 June 2021

Prospects on the evolutionary mitogenomics of plants: A case study on the olive family (Oleaceae).

scientific article published on 24 November 2017

Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress

scientific article published on 20 July 2012

RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and <i>Cis</i>-Regulation Analysis by Allele-Specific Expression in Livestock Species

scientific article published on 28 June 2021

RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed

article

Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background

scientific article published on 30 October 2020

Su1998 – Early Life Solid Food Ingestion Remodels the Gut Microbiota Compostion and Increases the Production of Protective Bacterial Metabolites

scholarly article

Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii

scientific article published on 07 January 2019

The Arabidopsis thaliana lectin receptor kinase LecRK-I.9 is required for full resistance to Pseudomonas syringae and affects jasmonate signalling.

scientific article published on 11 July 2016

The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline

scientific article

The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines

scientific article published in Scientific Reports

The genomic history and global expansion of domestic donkeys

scientific article published on 9 September 2022

The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats

scientific article published on 20 July 2016

Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

scientific article published on 23 October 2018

Transcriptomic and proteomic data in developing tomato fruit

scientific article published on 17 December 2019

Whole-genome landscape of Medicago truncatula symbiotic genes

article

Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly

scientific article published on 03 June 2016

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

scientific article published on 13 July 2014

Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions

scientific article published on 04 January 2021

Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells

scientific article published on 07 May 2013

Widespread horse-based mobility arose around 2,200 BCE in Eurasia

scientific article published on 6 June 2024

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