List of works - Jared Adolf-Bryfogle

Automatically Fixing Errors in Glycoprotein Structures with Rosetta

scientific article published on 18 October 2018

Better together: Elements of successful scientific software development in a distributed collaborative community

scientific article published on 04 May 2020

CoV3D: A database of high resolution coronavirus protein structures

scientific article published on 14 May 2020

CoV3D: a database of high resolution coronavirus protein structures

scientific article published on 05 September 2020

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

scientific article published on 29 November 2021

Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding

scientific article published on 01 January 2020

Human Alzheimer's disease synaptic O-GlcNAc site mapping and iTRAQ expression proteomics with ion trap mass spectrometry

scientific article published on 19 June 2010

Kinase-mediated changes in nucleosome conformation trigger chromatin decondensation via poly(ADP-ribosyl)ation

scientific article published on 06 February 2014

Macromolecular modeling and design in Rosetta: recent methods and frameworks

scientific article published on 01 June 2020

Modeling and docking of antibody structures with Rosetta.

scientific article published on 26 January 2017

Nucleic acid delivery of immune-focused SARS-CoV-2 nanoparticles drives rapid and potent immunogenicity capable of single-dose protection

scientific article published on 11 January 2022

PyIgClassify: a database of antibody CDR structural classifications

scientific article

PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design

scientific article published on 16 April 2021

Residue-centric modeling and design of saccharide and glycoconjugate structures