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List of works by David B Neale

A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.

scientific article published on 11 June 2015

A Reference Genome Sequence for Giant Sequoia

scientific article published on 18 September 2020

A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource

scientific article published on 09 July 2019

A sequence mutation in the cinnamyl alcohol dehydrogenase gene associated with altered lignification in loblolly pine

scientific article published in July 2003

Adaptive evolution of Mediterranean pines

scientific article

Adaptive variation in natural Alpine populations of Norway spruce ( Picea abies [L.] Karst) at regional scale: Landscape features and altitudinal gradient effects

scientific article published in 2017

Alpine forest genomics network (AForGeN): a report of the first annual meeting

An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine

scientific article published in May 2003

An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines

scientific article

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

scientific article

Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana).

scientific article published on 31 October 2016

Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.).

scientific article published on 04 March 2020

Association genetics in Pinus taeda L. I. Wood property traits.

scientific article published on 16 November 2006

Association genetics of chemical wood properties in black poplar (Populus nigra).

scientific article published on 16 November 2012

Association genetics of coastal Douglas fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-hardiness related traits

scientific article published on June 2009

Association genetics of complex traits in conifers

scientific article published in July 2004

Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential

scientific article

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

scientific article published on 30 November 2011

Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

scientific article published on 10 September 2010

Association mapping of quantitative disease resistance in a natural population of loblolly pine (Pinus taeda L.).

scientific article

Association of loblolly pine xylem development gene expression with single-nucleotide polymorphisms.

scientific article published in July 2013

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

scientific article published on 13 August 2010

CartograTree: connecting tree genomes, phenotypes and environment

scientific article published on 25 February 2013

Climate-related adaptive genetic variation and population structure in natural stands of Norway spruce in the South-Eastern Alps

Combining phenotype, genotype, and environment to uncover genetic components underlying water use efficiency in Persian walnut

scientific article published on 01 January 2020

Comparative Transcriptomics Among Four White Pine Species

scientific article published on 20 March 2018

Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera

scientific article published on 16 February 2022

Comparative genomics of six Juglans species reveals disease-associated gene family contractions

scientific article published on 10 December 2019

Comparative mapping in Pinus: sugar pine (Pinus lambertiana Dougl.) and loblolly pine (Pinus taeda L.)

article by Kathleen D. Jermstad et al published 23 October 2010 in Tree Genetics and Genomes

Comparative mapping in the Pinaceae

scientific article

Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species

scientific article published in 2012

Conserved ortholog sets in forest trees

Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests

scientific article (publication date: November 2012)

DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L.

scientific article published on 30 December 2005

Deciphering of the Genetic Control of Phenology, Yield, and Pellicle Color in Persian Walnut (Juglans regia L.).

scientific article published on 20 September 2019

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

scientific article

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

scientific article

Discovering candidate genes that regulate resin canal number in Pinus taeda stems by integrating genetic analysis across environments, ages, and populations

scientific article published on 30 September 2014

Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies)

scientific article (publication date: July 2012)

Dissecting the Polygenic Basis of Cold Adaptation Using Genome-Wide Association of Traits and Environmental Data in Douglas-fir

scientific article published in 2021

DnaSAM: Software to perform neutrality testing for large datasets with complex null models ⬇️

scientific article published on October 5, 2009

Environmental Genome-Wide Association Reveals Climate Adaptation Is Shaped by Subtle to Moderate Allele Frequency Shifts in Loblolly Pine

scientific article published on 01 October 2019

Environmental effects on fine-scale spatial genetic structure in four Alpine keystone forest tree species

scientific article published on 23 December 2017

Environmental versus geographical determinants of genetic structure in two subalpine conifers.

scientific article

Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

scientific article published on October 2017

Evolution of disease response genes in loblolly pine: insights from candidate genes

scientific article (publication date: 6 December 2010)

Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa

scientific article published on 20 November 2019

Finding loci associated to partial resistance to white pine blister rust in sugar pine (Pinus lambertiana Dougl.).

scientific article published in 2017

Forest tree genomics: growing resources and applications

scientific article

Forest-tree population genomics and adaptive evolution.

scientific article

From genotype to phenotype: unraveling the complexities of cold adaptation in forest trees

scientific article published on 30 January 2004

Genetic Analysis of Walnut (Juglans regia L.) Pellicle Pigment Variation Through a Novel, High-Throughput Phenotyping Platform

scientific article published on 02 October 2020

Genetic structure and association mapping of adaptive and selective traits in the east Texas loblolly pine (Pinus taeda L.) breeding populations

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.).

scientific article

Genome‐wide association identifies candidate genes for drought tolerance in coast redwood and giant sequoia

scientific article published on 8 December 2021

Genomic Variation Among and Within Six Juglans Species.

scientific article

Genomic architecture of complex traits in loblolly pine

article

Genomic architecture of complex traits in loblolly pine

scientific article published in 2018

Genomic basis of white pine blister rust quantitative disease resistance and its relationship with qualitative resistance

scientific article published on 11 July 2020

Genomic estimated breeding values using genomic relationship matrices in a cloned population of loblolly pine.

scientific article published on 20 May 2013

Genomic selection using a realized genomic relationship matrix in a Pinus taeda L. cloned population

scientific article

High rate of adaptive evolution in two widespread European pines.

scientific article published on 7 November 2017

High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome

scientific article published on 01 May 2020

Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L.). III. QTL Verification and candidate gene mapping

scientific article

Insights into the loblolly pine genome: characterization of BAC and fosmid sequences

scientific article

Local adaptation at fine spatial scales: an example from sugar pine (Pinus lambertiana, Pinaceae)

scientific article published in 2015

Mapping Fusiform Rust Resistance Genes within a Complex Mating Design of Loblolly Pine

scientific article published in 2014

Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas fir. III. Quantitative trait loci-by-environment interactions.

scientific article

Micro- and macro-geographic scale effect on the molecular imprint of selection and adaptation in Norway spruce

scientific article

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus).

scientific article published on 18 October 2013

Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).

scientific article published on 13 July 2009

Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir.

scientific article

Nucleotide diversity and linkage disequilibrium in loblolly pine

scholarly article

Open access to tree genomes: the path to a better forest

scientific article (publication date: 24 June 2013)

Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae).

scientific article

PineSAP--sequence alignment and SNP identification pipeline

scientific article

Population biology of sugar pine (Pinus lambertiana Dougl.) with reference to historical disturbances in the Lake Tahoe Basin: Implications for restoration

scientific article published on 18 June 2011

Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.).

scientific article published on 01 December 2019

Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine

scientific article

Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Pyrus Collection

scientific article published on 16 July 2020

SNP markers trace familial linkages in a cloned population of Pinus taeda—prospects for genomic selection

article published in 2012

Selective Sweeps and Polygenic Adaptation Drive Local Adaptation along Moisture and Temperature Gradients in Natural Populations of Coast Redwood and Giant Sequoia

scientific article published in 2021

Sequence of the Sugar Pine Megagenome

scientific article published on 28 October 2016

Sequencing and assembly of the 22-gb loblolly pine genome

scientific article

Spatial Algorithms Applied to Landscape Diversity Estimate from Remote Sensing Data

article

Spatially variable natural selection and the divergence between parapatric subspecies of lodgepole pine (Pinus contorta, Pinaceae) ⬇️

scientific article published on July 26, 2012

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae

scientific article published on 27 July 2017

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

scientific article

The evolutionary genetics of the genes underlying phenotypic associations for loblolly pine (Pinus taeda, Pinaceae)

scientific article (publication date: December 2013)

The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols

scientific article published on 3 May 2016

Transcription Through The Eye Of A Needle: Daily And Annual Cycles Of Gene Expression Variation In Douglas-Fir Needles

article

Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.

scientific article published on 24 July 2017

TreeGenes: A forest tree genome database

scientific article published on January 2008

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation

scientific article

Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA.

scientific article

YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut

scientific article

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