List of works - Dominik Heider

3'-Phosphoadenosine 5'-phosphosulfate (PAPS) synthases, naturally fragile enzymes specifically stabilized by nucleotide binding

scientific article

A combination of α-fetoprotein and des-γ-carboxy prothrombin is superior in detection of hepatocellular carcinoma

scientific article

A large-scale comparative study on peptide encodings for biomedical classification

scientific article published on 22 May 2021

A new approach to inhibit human β-tryptase by protein surface binding of four-armed peptide ligands with two different sets of arms

scientific article published in February 2013

A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification

scientific article published in 2023

A simple structure-based model for the prediction of HIV-1 co-receptor tropism

scientific article published on August 2014

A small set of succinct signature patterns distinguishes Chinese and non-Chinese HIV-1 genomes

scientific article

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities

scientific article published on 2 November 2015

Bacterial Glycosyltransferases: Challenges and Opportunities of a Highly Diverse Enzyme Class Toward Tailoring Natural Products

scientific article published on 18 February 2016

Baseline activity predicts working memory load of preceding task condition.

scientific article

Chemico-genetic strategies to inhibit the leukemic potential of threonine aspartase-1

scientific article

Comparative analyses of error handling strategies for next-generation sequencing in precision medicine

scientific article published on 01 April 2020

Compensation of feature selection biases accompanied with improved predictive performance for binary classification by using a novel ensemble feature selection approach

scientific article

Computational Design of a DNA- and Fc-Binding Fusion Protein

scientific article published on 14 September 2011

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

scientific article published on 04 November 2020

ContraDRG: Automatic Partial Charge Prediction by Machine Learning

scientific article published on 30 October 2019

Current Approaches in Computational Drug Resistance Prediction in HIV.

scientific article published on 21 March 2016

DNA watermarks in non-coding regulatory sequences

scientific article published on 7 July 2009

DNA watermarks: a proof of concept

scientific article

DNA-based watermarks using the DNA-Crypt algorithm

scientific article

Deep learning on chaos game representation for proteins

scientific article published on 01 January 2020

Design of a modular protein-based MRI contrast agent for targeted application.

scientific article

Dynamic causal modeling with genetic algorithms.

scientific article published on 20 November 2010

EFS: an ensemble feature selection tool implemented as R-package and web-application.

scientific article published on 27 June 2017

Encodings and models for antimicrobial peptide classification for multi-resistant pathogens

scientific article published on 04 March 2019

Endoscopic management is the treatment of choice for bile leaks after liver resection

scientific article published on 3 May 2014

Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis

scientific article published on 21 January 2020

Fractal construction of constrained code words for DNA storage systems

scientific article published on 01 March 2022

GALAD Score Detects Early Hepatocellular Carcinoma in an International Cohort of Patients With Nonalcoholic Steatohepatitis

scientific article published on 08 November 2019

GUESS: projecting machine learning scores to well-calibrated probability estimates for clinical decision-making

scientific article published on 01 July 2019

Genotypic Prediction of Co-receptor Tropism of HIV-1 Subtypes A and C

scientific article published on 29 April 2016

Group-Agreement as a Reliability Measure for Witness Recommendations in Reputation-Based Trust Protocols

article by Sascha Hauke et al published 2011 in Lecture Notes in Computer Science

Impact of working memory load on FMRI resting state pattern in subsequent resting phases

scientific article

Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers

scientific article

In Acute Myocardial Infarction Liver Parameters Are Associated With Stenosis Diameter.

scientific article published on February 2016

Interpol: An R package for preprocessing of protein sequences

scientific article published on 17 June 2011

Low transferrin and high ferritin concentrations are associated with worse outcome in acute liver failure.

scientific article published on 20 January 2017

MESA: automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing, and PCR errors

scientific article published on 04 March 2020

Machine learning on normalized protein sequences.

scientific article

NAFLD-Associated Comorbidities in Advanced Stage HCC Do Not Alter the Safety and Efficacy of Yttrium-90 Radioembolization

scientific article published on 29 July 2019

Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective

scientific article published on 26 March 2019

Non-invasive separation of alcoholic and non-alcoholic liver disease with predictive modeling

scientific article

Normal liver enzymes are correlated with severity of metabolic syndrome in a large population based cohort.

scientific article

Parameters Influencing Baseline HIV-1 Genotypic Tropism Testing Related to Clinical Outcome in Patients on Maraviroc

scientific article

Predicting Bevirimat resistance of HIV-1 from genotype

scientific article

Prediction of co-receptor usage of HIV-1 from genotype

scientific article published in April 2010

Protistan community analysis: key findings of a large-scale molecular sampling

scientific article

Quantification of the covariation of lake microbiomes and environmental variables using a machine learning‐based framework

scientific article published on 08 March 2021

SCOTCH: Subtype A Coreceptor Tropism Classification in HIV-1.

scientific article published on 15 March 2018

SEDE-GPS: socio-economic data enrichment based on GPS information

scientific article published on 30 November 2018

SHIVA - a web application for drug resistance and tropism testing in HIV.

scientific article

Single-domain parvulins constitute a specific marker for recently proposed deep-branching archaeal subgroups

scientific article

Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism.

scientific article

Ten simple rules to colorize biological data visualization

scientific article published on 15 October 2020

The GALAD scoring algorithm based on AFP, AFP-L3, and DCP significantly improves detection of BCLC early stage hepatocellular carcinoma.

scientific article published on 9 December 2016

The action of small GTPases Rab11 and Rab25 in vesicle trafficking during cell migration

scientific article

The virtual doctor: An interactive clinical-decision-support system based on deep learning for non-invasive prediction of diabetes

scientific article published on 21 August 2019

Watermarking sexually reproducing diploid organisms.

scientific article published on 3 July 2008

eccCL: parallelized GPU implementation of Ensemble Classifier Chains

scientific article

fMRI data visualization with BrainBlend and Blender

scientific article

gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing

scientific article

gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning

scientific article published on 21 April 2020

Natrix2 – Improved amplicon workflow with novel Oxford Nanopore Technologies support and enhancements in clustering, classification and taxonomic databases

scientific article published in 2023

List of works by Dominik Heider

3'-Phosphoadenosine 5'-phosphosulfate (PAPS) synthases, naturally fragile enzymes specifically stabilized by nucleotide binding

A combination of α-fetoprotein and des-γ-carboxy prothrombin is superior in detection of hepatocellular carcinoma

A large-scale comparative study on peptide encodings for biomedical classification

A new approach to inhibit human β-tryptase by protein surface binding of four-armed peptide ligands with two different sets of arms

A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification

A simple structure-based model for the prediction of HIV-1 co-receptor tropism

A small set of succinct signature patterns distinguishes Chinese and non-Chinese HIV-1 genomes

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities

Bacterial Glycosyltransferases: Challenges and Opportunities of a Highly Diverse Enzyme Class Toward Tailoring Natural Products

Baseline activity predicts working memory load of preceding task condition.

Chemico-genetic strategies to inhibit the leukemic potential of threonine aspartase-1

Comparative analyses of error handling strategies for next-generation sequencing in precision medicine

Compensation of feature selection biases accompanied with improved predictive performance for binary classification by using a novel ensemble feature selection approach

Computational Design of a DNA- and Fc-Binding Fusion Protein

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

ContraDRG: Automatic Partial Charge Prediction by Machine Learning

Current Approaches in Computational Drug Resistance Prediction in HIV.

DNA watermarks in non-coding regulatory sequences

DNA watermarks: a proof of concept

DNA-based watermarks using the DNA-Crypt algorithm

Deep learning on chaos game representation for proteins

Design of a modular protein-based MRI contrast agent for targeted application.

Dynamic causal modeling with genetic algorithms.

EFS: an ensemble feature selection tool implemented as R-package and web-application.

Encodings and models for antimicrobial peptide classification for multi-resistant pathogens

Endoscopic management is the treatment of choice for bile leaks after liver resection

Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis

Fractal construction of constrained code words for DNA storage systems

GALAD Score Detects Early Hepatocellular Carcinoma in an International Cohort of Patients With Nonalcoholic Steatohepatitis

GUESS: projecting machine learning scores to well-calibrated probability estimates for clinical decision-making

Genotypic Prediction of Co-receptor Tropism of HIV-1 Subtypes A and C

Group-Agreement as a Reliability Measure for Witness Recommendations in Reputation-Based Trust Protocols

Impact of working memory load on FMRI resting state pattern in subsequent resting phases

Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers

In Acute Myocardial Infarction Liver Parameters Are Associated With Stenosis Diameter.

Interpol: An R package for preprocessing of protein sequences

Low transferrin and high ferritin concentrations are associated with worse outcome in acute liver failure.

MESA: automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing, and PCR errors

Machine learning on normalized protein sequences.

NAFLD-Associated Comorbidities in Advanced Stage HCC Do Not Alter the Safety and Efficacy of Yttrium-90 Radioembolization

Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective

Non-invasive separation of alcoholic and non-alcoholic liver disease with predictive modeling

Normal liver enzymes are correlated with severity of metabolic syndrome in a large population based cohort.

Parameters Influencing Baseline HIV-1 Genotypic Tropism Testing Related to Clinical Outcome in Patients on Maraviroc

Predicting Bevirimat resistance of HIV-1 from genotype

Prediction of co-receptor usage of HIV-1 from genotype

Protistan community analysis: key findings of a large-scale molecular sampling

Quantification of the covariation of lake microbiomes and environmental variables using a machine learning‐based framework

SCOTCH: Subtype A Coreceptor Tropism Classification in HIV-1.

SEDE-GPS: socio-economic data enrichment based on GPS information

SHIVA - a web application for drug resistance and tropism testing in HIV.

Single-domain parvulins constitute a specific marker for recently proposed deep-branching archaeal subgroups

Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism.

Ten simple rules to colorize biological data visualization

The GALAD scoring algorithm based on AFP, AFP-L3, and DCP significantly improves detection of BCLC early stage hepatocellular carcinoma.

The action of small GTPases Rab11 and Rab25 in vesicle trafficking during cell migration

The virtual doctor: An interactive clinical-decision-support system based on deep learning for non-invasive prediction of diabetes

Watermarking sexually reproducing diploid organisms.

eccCL: parallelized GPU implementation of Ensemble Classifier Chains

fMRI data visualization with BrainBlend and Blender

gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing

gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning

﻿Natrix2 – Improved amplicon workflow with novel Oxford Nanopore Technologies support and enhancements in clustering, classification and taxonomic databases

Natrix2 – Improved amplicon workflow with novel Oxford Nanopore Technologies support and enhancements in clustering, classification and taxonomic databases