List of works - Maido Remm

A Computational Study of Elongation Factor G (EFG) Duplicated Genes: Diverged Nature Underlying the Innovation on the Same Structural Template ⬇️

scientific article published on August 4, 2011

A first-generation linkage disequilibrium map of human chromosome 22

scientific article published in Nature

A high capacity assay for inhibitors of human papillomavirus DNA replication.

scientific article published on November 1995

A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals

scientific article published on 03 August 2020

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

article

A parallel SNP array study of genomic aberrations associated with mental retardation in patients and general population in Estonia

scientific article published on 26 November 2010

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

scientific article

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

scientific article published on 18 July 2019

An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population

scientific article

Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins.

scientific article published in March 2011

Application of two different microarray-based copy-number detection methodologies – array-comparative genomic hybridization and array-multiplex amplifiable probe hybridization – with identical amplifiable target sequences

Array-MAPH: a methodology for the detection of locus copy-number changes in complex genomes

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

scientific article (publication date: 14 December 2001)

Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms

scientific article published on 8 April 2009

Characterization of species-specific repeats in 613 prokaryotic species

scientific article

Classification of transmembrane protein families in the Caenorhabditis elegans genome and identification of human orthologs

scientific article published on November 2000

Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined <i>In Vitro</i>-Tagged Strain Competition and Genome-Wide Association Analysis

scientific article published on 27 July 2021

ConoDictor: a tool for prediction of conopeptide superfamilies

scientific article published on 31 May 2012

Detection of NASBA amplified bacterial tmRNA molecules on SLICSel designed microarray probes

scientific article

Detection of small genomic imbalances using microarray-based multiplex amplifiable probe hybridization

Detection of tmRNA molecules on microarrays at low temperatures using helper oligonucleotides

scientific article

Development of a multiplex real-time PCR assay for the rapid diagnosis of neonatal late onset sepsis

scientific article published on 4 August 2014

Development of a single tube 640-plex genotyping method for detection of nucleic acid variations on microarrays

scientific article published on 5 June 2008

Enhancements and modifications of primer design program Primer3.

scientific article published on 22 March 2007

Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation

scientific article

Fast masking of repeated primer binding sites in eukaryotic genomes

scientific article published on January 2007

Fast masking of repeated primer binding sites in eukaryotic genomes

scientific article published on January 2015

FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads

Fluorescent labeling of NASBA amplified tmRNA molecules for microarray applications

scientific article published on 15 May 2009

Fluoride-cleavable, fluorescently labelled reversible terminators: synthesis and use in primer extension ⬇️

scientific article published on 3 February 2011

GENOMEMASKER package for designing unique genomic PCR primers

scientific article published on 27 March 2006

Genetic structure of Europeans: a view from the North-East

scientific article

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists

scientific article published on 3 December 2015

Haplotype phasing and inheritance of copy number variants in nuclear families

scientific article published on 8 April 2015

Haplotypes in the human Foxo1a and Foxo3a genes; impact on disease and mortality at old age

article

High-density genotyping and linkage disequilibrium in the human genome using chromosome 22 as a model

scientific article

High-resolution picture of a venom gland transcriptome: case study with the marine snail Conus consors

scientific article

Highly expressed proteins have an increased frequency of alanine in the second amino acid position.

scientific article

Identification and analysis of papillomavirus E2 protein binding sites in the human genome.

scientific article published on 26 October 2011

Identification and classification of conopeptides using profile Hidden Markov Models

scientific article published on 30 December 2011

Inparanoid: a comprehensive database of eukaryotic orthologs

scientific article

Limnobacter spp. as newly detected phenol-degraders among Baltic Sea surface water bacteria characterised by comparative analysis of catabolic genes

scientific article published on 4 September 2013

Linkage disequilibrium patterns and tagSNP transferability among European populations

scientific article

Macrolide antibiotics allosterically predispose the ribosome for translation arrest

scientific article

Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers

scientific article published on 29 June 2015

Molecular diagnosis of Down syndrome using quantitative APEX-2 microarrays

scientific article published in December 2010

MultiPLX: automatic grouping and evaluation of PCR primers

scientific article published on January 2007

MultiPLX: automatic grouping and evaluation of PCR primers

article

MultiPLX: automatic grouping and evaluation of PCR primers.

scientific article published in January 2015

Natural Variation in Arabidopsis Cvi-0 Accession Reveals an Important Role of MPK12 in Guard Cell CO2 Signaling

scientific article

No evidence of somatic DNA copy number alterations in eutopic and ectopic endometrial tissue in endometriosis

scientific article

Non-syndromic tooth agenesis associated with a nonsense mutation in ectodysplasin-A (EDA).

scientific article published on 19 April 2013

Phylogenetic distribution of translational GTPases in bacteria

scientific article published on 10 January 2007

PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

scientific article published on 2 April 2018

Population genetic structure in Indian Austroasiatic speakers: the role of landscape barriers and sex-specific admixture

scientific article

Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies

scientific article published on 22 January 2013

Predicting failure rate of PCR in large genomes

scientific article published on 20 May 2008

Preferred and avoided codon pairs in three domains of life

scientific article

Primer3--new capabilities and interfaces

scientific article (publication date: August 2012)

SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes

scientific article

Screening of 20 patients with X-linked mental retardation using chromosome X-specific array-MAPH.

scientific article published on 29 September 2007

Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia

scientific article

Structural genomic variation as risk factor for idiopathic recurrent miscarriage

scientific article

The E2 binding sites determine the efficiency of replication for the origin of human papillomavirus type 18 ⬇️

scientific article published on November 25, 1992

The mitochondrial genome of the venomous cone snail Conus consors

scientific article published in 2012

The whole genome tagSNP selection and transferability among HapMap populations.

scientific article published on January 2006

Thiopurine S-methyltransferase (TPMT) pharmacogenetics: three new mutations and haplotype analysis in the Estonian population

scientific article

Translation initiation region sequence preferences in Escherichia coli

scientific article

X-chromosome as a marker for population history: linkage disequilibrium and haplotype study in Eurasian populations

scientific article

List of works by Maido Remm

A Computational Study of Elongation Factor G (EFG) Duplicated Genes: Diverged Nature Underlying the Innovation on the Same Structural Template ⬇️

A first-generation linkage disequilibrium map of human chromosome 22

A high capacity assay for inhibitors of human papillomavirus DNA replication.

A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

A parallel SNP array study of genomic aberrations associated with mental retardation in patients and general population in Estonia

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population

Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins.

Application of two different microarray-based copy-number detection methodologies – array-comparative genomic hybridization and array-multiplex amplifiable probe hybridization – with identical amplifiable target sequences

Array-MAPH: a methodology for the detection of locus copy-number changes in complex genomes

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms

Characterization of species-specific repeats in 613 prokaryotic species

Classification of transmembrane protein families in the Caenorhabditis elegans genome and identification of human orthologs

Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined <i>In Vitro</i>-Tagged Strain Competition and Genome-Wide Association Analysis

ConoDictor: a tool for prediction of conopeptide superfamilies

Detection of NASBA amplified bacterial tmRNA molecules on SLICSel designed microarray probes

Detection of small genomic imbalances using microarray-based multiplex amplifiable probe hybridization

Detection of tmRNA molecules on microarrays at low temperatures using helper oligonucleotides

Development of a multiplex real-time PCR assay for the rapid diagnosis of neonatal late onset sepsis

Development of a single tube 640-plex genotyping method for detection of nucleic acid variations on microarrays

Enhancements and modifications of primer design program Primer3.

Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation

Fast masking of repeated primer binding sites in eukaryotic genomes

Fast masking of repeated primer binding sites in eukaryotic genomes

FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads

Fluorescent labeling of NASBA amplified tmRNA molecules for microarray applications

Fluoride-cleavable, fluorescently labelled reversible terminators: synthesis and use in primer extension ⬇️

GENOMEMASKER package for designing unique genomic PCR primers

Genetic structure of Europeans: a view from the North-East

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists

Haplotype phasing and inheritance of copy number variants in nuclear families

Haplotypes in the human Foxo1a and Foxo3a genes; impact on disease and mortality at old age

High-density genotyping and linkage disequilibrium in the human genome using chromosome 22 as a model

High-resolution picture of a venom gland transcriptome: case study with the marine snail Conus consors

Highly expressed proteins have an increased frequency of alanine in the second amino acid position.

Identification and analysis of papillomavirus E2 protein binding sites in the human genome.

Identification and classification of conopeptides using profile Hidden Markov Models

Inparanoid: a comprehensive database of eukaryotic orthologs

Limnobacter spp. as newly detected phenol-degraders among Baltic Sea surface water bacteria characterised by comparative analysis of catabolic genes

Linkage disequilibrium patterns and tagSNP transferability among European populations

Macrolide antibiotics allosterically predispose the ribosome for translation arrest

Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers

Molecular diagnosis of Down syndrome using quantitative APEX-2 microarrays

MultiPLX: automatic grouping and evaluation of PCR primers

MultiPLX: automatic grouping and evaluation of PCR primers

MultiPLX: automatic grouping and evaluation of PCR primers.

Natural Variation in Arabidopsis Cvi-0 Accession Reveals an Important Role of MPK12 in Guard Cell CO2 Signaling

No evidence of somatic DNA copy number alterations in eutopic and ectopic endometrial tissue in endometriosis

Non-syndromic tooth agenesis associated with a nonsense mutation in ectodysplasin-A (EDA).

Phylogenetic distribution of translational GTPases in bacteria

PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

Population genetic structure in Indian Austroasiatic speakers: the role of landscape barriers and sex-specific admixture

Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies

Predicting failure rate of PCR in large genomes

Preferred and avoided codon pairs in three domains of life

Primer3--new capabilities and interfaces

SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes

Screening of 20 patients with X-linked mental retardation using chromosome X-specific array-MAPH.

Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia

Structural genomic variation as risk factor for idiopathic recurrent miscarriage

The E2 binding sites determine the efficiency of replication for the origin of human papillomavirus type 18 ⬇️

The mitochondrial genome of the venomous cone snail Conus consors

The whole genome tagSNP selection and transferability among HapMap populations.

Thiopurine S-methyltransferase (TPMT) pharmacogenetics: three new mutations and haplotype analysis in the Estonian population

Translation initiation region sequence preferences in Escherichia coli

X-chromosome as a marker for population history: linkage disequilibrium and haplotype study in Eurasian populations