List of works - Timothy F. Cooper

Adaptation of Escherichia coli to glucose promotes evolvability in lactose

scientific article

Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli.

scientific article

Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness

scientific article published on 18 April 2016

Cellular Growth Arrest and Persistence from Enzyme Saturation

scientific article

Constraints on adaptation of Escherichia coli to mixed-resource environments increase over time

scientific article published on 23 June 2015

Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory.

scientific article

Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic Relatedness

scientific article published on 12 November 2019

Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli

scientific article published on 18 September 2006

Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria.

scientific article published on 23 October 2017

Environment changes epistasis to alter trade-offs along alternative evolutionary paths

scientific article published on 12 September 2019

Environment dependent costs and benefits of recombination in independently evolved populations of Escherichia coli

scientific article published on 13 April 2020

Estimation of the rate and effect of new beneficial mutations in asexual populations

scientific article published on 3 December 2011

Evolution of bacterial diversity and the origins of modularity

scientific article

Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations

scientific article

Expression Profiles Reveal Parallel Evolution of Epistatic Interactions Involving the CRP regulon in Escherichia coli

scientific article published in 2005

Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli

scientific article

Genetic background affects epistatic interactions between two beneficial mutations

scientific article published on 15 August 2012

Grappling with anisotropic data, pseudo-merohedral twinning and pseudo-translational noncrystallographic symmetry: a case study involving pyruvate kinase.

scientific article

Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli

scientific article

Measuring selection coefficients below 10(-3): method, questions, and prospects

scientific article published on 31 October 2011

Mechanisms and selection of evolvability: experimental evidence ⬇️

scientific article published on November 15, 2012

Metabolism gets lucky ⬇️

scientific article published on November 30, 2010

Negative epistasis between beneficial mutations in an evolving bacterial population

scientific article published in June 2011

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

scientific article

Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex.

scientific article published in February 2005

Predicting microbial growth in a mixed culture from growth curve data

scientific article published on 28 June 2019

Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data ⬇️

scientific article published on February 23, 2012

Second-order selection for evolvability in a large Escherichia coli population

scientific article

Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness

scientific article

The causes of epistasis

scientific article

The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens

scientific article published on 21 July 2010

The environment affects epistatic interactions to alter the topology of an empirical fitness landscape

scientific article

List of works by Timothy F. Cooper

Adaptation of Escherichia coli to glucose promotes evolvability in lactose

Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli.

Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness

Cellular Growth Arrest and Persistence from Enzyme Saturation

Constraints on adaptation of Escherichia coli to mixed-resource environments increase over time

Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory.

Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic Relatedness

Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli

Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria.

Environment changes epistasis to alter trade-offs along alternative evolutionary paths

Environment dependent costs and benefits of recombination in independently evolved populations of Escherichia coli

Estimation of the rate and effect of new beneficial mutations in asexual populations

Evolution of bacterial diversity and the origins of modularity

Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations

Expression Profiles Reveal Parallel Evolution of Epistatic Interactions Involving the CRP regulon in Escherichia coli

Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli

Genetic background affects epistatic interactions between two beneficial mutations

Grappling with anisotropic data, pseudo-merohedral twinning and pseudo-translational noncrystallographic symmetry: a case study involving pyruvate kinase.

Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli

Measuring selection coefficients below 10(-3): method, questions, and prospects

Mechanisms and selection of evolvability: experimental evidence ⬇️

Metabolism gets lucky ⬇️

Negative epistasis between beneficial mutations in an evolving bacterial population

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex.

Predicting microbial growth in a mixed culture from growth curve data

Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data ⬇️

Second-order selection for evolvability in a large Escherichia coli population

Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness

The causes of epistasis

The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens

The environment affects epistatic interactions to alter the topology of an empirical fitness landscape