List of works - Achillefs N Kapanidis

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

scientific article

Aligning the μs-ALEX Setup

scientific article published on 2 November 2015

Alternating Laser Excitation for Solution-Based Single-Molecule FRET.

scientific article published on 2 November 2015

Alternating-laser excitation of single molecules

scientific article

Assembling the μs-ALEX Setup

scientific article published on 2 November 2015

Assembly, translocation, and activation of XerCD-dif recombination by FtsK translocase analyzed in real-time by FRET and two-color tethered fluorophore motion.

scientific article

Biology, one molecule at a time

scientific article published on 11 April 2009

Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence

scientific article

Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET.

scientific article

Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion.

scientific article published on January 2013

Conformational transitions during FtsK translocase activation of individual XerCD-dif recombination complexes

scientific article published on 07 October 2013

Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

scientific article

Corrigendum to "In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair" [FEBS Lett. 588 (19) (2014) 3585-3594]

scientific article published on 01 March 2015

DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations

scientific article (publication date: 2016)

Defining the limits of single-molecule FRET resolution in TIRF microscopy

scientific article

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

scientific article

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

scientific article

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

scientific article published on 2 June 2004

In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria

scientific article published on 12 September 2016

In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair

scientific article

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

scientific article

Internalization and observation of fluorescent biomolecules in living microorganisms via electroporation

scientific article

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

scientific article (publication date: 11 August 2015)

Long-lived intracellular single-molecule fluorescence using electroporated molecules

scientific article published on December 2013

Multiscale spatial organization of RNA polymerase in Escherichia coli

scientific article published on July 2013

Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation

scientific article

Periodic acceptor excitation spectroscopy of single molecules.

scientific article published on 6 February 2007

Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

scientific article published on 31 August 2018

Probing biomolecular structures and dynamics of single molecules using in-gel alternating-laser excitation

scientific article

Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

scholarly article by Björn Hellenkamp published in October 2018

RNA Polymerase Pausing during Initial Transcription

scientific article published on 03 September 2016

Red light, green light: probing single molecules using alternating-laser excitation

scientific article

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

scientific article

Rotavirus mRNAS are released by transcript-specific channels in the double-layered viral capsid

scientific article published on July 2013

Sample Preparation and Data Acquisition for μs-ALEX.

scientific article

Single-molecule DNA repair in live bacteria.

scientific article published on 29 April 2013

Single-molecule FRET analysis of protein-DNA complexes

scientific article

Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter

scientific article

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli.

scientific article published on 26 August 2016

Solution-Based Single-Molecule FRET Studies of K(+) Channel Gating in a Lipid Bilayer

scientific article

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

scientific article

Studying the organization of DNA repair by single-cell and single-molecule imaging

scientific article published on 12 March 2014

Surfing on a new wave of single-molecule fluorescence methods

scientific article

T7 RNA Polymerase Functions In Vitro without Clustering ⬇️

scientific article published on July 2, 2012

Tethered fluorophore motion: studying large DNA conformational changes by single-fluorophore imaging

scientific article

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF.

scientific article published on 09 December 2015

The power and prospects of fluorescence microscopies and spectroscopies.

scientific article

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

scientific article published on 28 December 2012

Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances

scientific article published on 13 October 2006

Understanding Protein Mobility in Bacteria by Tracking Single Molecules

article

List of works by Achillefs N Kapanidis

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

Aligning the μs-ALEX Setup

Alternating Laser Excitation for Solution-Based Single-Molecule FRET.

Alternating-laser excitation of single molecules

Assembling the μs-ALEX Setup

Assembly, translocation, and activation of XerCD-dif recombination by FtsK translocase analyzed in real-time by FRET and two-color tethered fluorophore motion.

Biology, one molecule at a time

Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence

Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET.

Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion.

Conformational transitions during FtsK translocase activation of individual XerCD-dif recombination complexes

Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

Corrigendum to "In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair" [FEBS Lett. 588 (19) (2014) 3585-3594]

DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations

Defining the limits of single-molecule FRET resolution in TIRF microscopy

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria

In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

Internalization and observation of fluorescent biomolecules in living microorganisms via electroporation

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

Long-lived intracellular single-molecule fluorescence using electroporated molecules

Multiscale spatial organization of RNA polymerase in Escherichia coli

Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation

Periodic acceptor excitation spectroscopy of single molecules.

Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

Probing biomolecular structures and dynamics of single molecules using in-gel alternating-laser excitation

Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

RNA Polymerase Pausing during Initial Transcription

Red light, green light: probing single molecules using alternating-laser excitation

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

Rotavirus mRNAS are released by transcript-specific channels in the double-layered viral capsid

Sample Preparation and Data Acquisition for μs-ALEX.

Single-molecule DNA repair in live bacteria.

Single-molecule FRET analysis of protein-DNA complexes

Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli.

Solution-Based Single-Molecule FRET Studies of K(+) Channel Gating in a Lipid Bilayer

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

Studying the organization of DNA repair by single-cell and single-molecule imaging

Surfing on a new wave of single-molecule fluorescence methods

T7 RNA Polymerase Functions In Vitro without Clustering ⬇️

Tethered fluorophore motion: studying large DNA conformational changes by single-fluorophore imaging

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF.

The power and prospects of fluorescence microscopies and spectroscopies.

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances

Understanding Protein Mobility in Bacteria by Tracking Single Molecules