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List of works by Bernard Goffinet

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HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment

scientific article published on 12 July 2016
Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

scientific article
Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias

scientific article
Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence

scientific article published on December 2010
350 my of mitochondrial genome stasis in mosses, an early land plant lineage.

scientific article published on 30 June 2014
Systematics of the Bryophyta (Mosses): From molecules to a revised classification

scientific article
Phylogenetic Relationships among the Mosses Based on Heterogeneous Bayesian Analysis of Multiple Genes from Multiple Genomic Compartments

scientific article published in April 2004
Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta)

scientific article
Phylogenetic inference rejects sporophyte based classification of the Funariaceae (Bryophyta): rapid radiation suggests rampant homoplasy in sporophyte evolution.

scientific article published on 22 September 2011
Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

scientific article published on 02 April 2019
The cuticle on the gametophyte calyptra matures before the sporophyte cuticle in the moss Funaria hygrometrica (Funariaceae).

scientific article
The Bryophyta (Mosses): Systematic and Evolutionary Inferences from an rps4 Gene (cpDNA) Phylogeny

scientific article published in February 2001
Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida).

scientific article published on 2 July 2008
Global Patterns of Moss Diversity: Taxonomic and Molecular Inferences

scientific article (publication date: May 2005)
A hundred-year-old question: is the moss calyptra covered by a cuticle? A case study of Funaria hygrometrica

scientific article
Unnoticed diversity within the disjunct moss Orthotrichum tenellum s.l. validated by morphological and molecular approaches

scientific article (publication date: 20 December 2013)
The barriers to oceanic island radiation in bryophytes: insights from the phylogeography of the moss Grimmia montana

Further photomorphs in the lichen family Lobariaceae from Reunion (Mascarene archipelago) with notes on the phylogeny of Dendriscocaulon cyanomorphs

scholarly article by Nicolas Magain et al published June 2012 in The Bryologist
Geographical range in liverworts: does sex really matter?

The hornwort genome and early land plant evolution

scientific article published on 10 February 2020
Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss).

scientific article
Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales

scientific article published in November 2004
A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta).

scientific article published on 23 January 2016
Organellar genome, nuclear ribosomal DNA repeat unit, and microsatellites isolated from a small-scale of 454 GS FLX sequencing on two mosses

scientific article
Dehydration protection provided by a maternal cuticle improves offspring fitness in the moss Funaria hygrometrica

scientific article (publication date: May 2013)
High diversity, high insular endemism and recent origin in the lichen genus Sticta (lichenized Ascomycota, Peltigerales) in Madagascar and the Mascarenes

scientific article published on 19 January 2018
Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon

scientific article published on 28 August 2017
Is the sword moss (Bryoxiphium) a preglacial Tertiary relict?

scientific article published on 18 December 2015
Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota)

scientific article published on 20 June 2019
Phylogenetic Significance of the rpoA Loss in the Chloroplast Genome of Mosses

scientific article (publication date: May 2005)
Nuclear DNA content variation and evolution in liverworts.

scientific article published on 23 April 2013
Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae

scientific article
The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain

scientific article published on 15 February 2013
Pseudocyphellaria crocata (Ascomycota: Lobariaceae) in the Americas is revealed to be thirteen species, and none of them is P. crocata

scientific article published in 2017
Increased diversification rates follow shifts to bisexuality in liverworts

scientific article published on February 2016
Phylogenetic delineation of Nothoceros and Megaceros (Dendrocerotaceae)

scientific article (publication date: March 2010)
Frequent pseudogenization and loss of the plastid-encoded sulfate-transport gene cysA throughout the evolution of liverworts.

scientific article published in August 2011
Morphology and classification of mosses

scholarly article by Buck & Goffinet, 2000
Development of the enigmatic peristome of Timmia megapolitana (Timmiaceae; Bryophyta).

scientific article published in March 2007
Peltigera chionophila,a New Lichen (Ascomycetes) from the Western Cordillera of North America

scientific article published in September 2000
Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure

scientific article published on 25 March 2011
Phylogenetic Inferences Based on nrDNA Sequences Support Five Morphospecies Within the Peltigera didactyla Complex (Lichenized Ascomycota)

scientific article published in September 2003
A Molecular and Morphological Recircumscription of Brachytheciastrum (Brachytheciaceae, Bryopsida)

scientific article (publication date: May 2005)
Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in Peltigera section Peltigera (lichenized Ascomycota: Lecanoromycetes)

article
Oligocene origin and drivers of diversification in the genus Sticta (Lobariaceae, Ascomycota).

scientific article published on 12 April 2018
Phylogeny, Character Evolution, and Biogeography of the Gondwanic Moss Family Hypopterygiaceae (Bryophyta)

scientific article published in March 2008
Circumscription and phylogeny of the Lepidostromatales (lichenized Basidiomycota) following discovery of new species from China and Africa.

scientific article
Disentangling knots of rapid evolution: origin and diversification of the moss order Hypnales

scientific article published in September 2012
Chloroplast, mitochondrial, and nuclear microsatellites from the southern Appalachian hornwort, Nothoceros aenigmaticus (Dendrocerotaceae).

scientific article
Microsatellite primers in the Peltigera dolichorhiza complex (lichenized ascomycete, Peltigerales)

scientific article published on 22 September 2010

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