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List of works by Allan E Konopka

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation

scientific article

Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

scientific article published on 29 July 2016

Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment

scientific article

Dynamic modeling of aerobic growth of Shewanella oneidensis. Predicting triauxic growth, flux distributions, and energy requirement for growth

scientific article published on 26 September 2012

Dynamics in microbial communities: unraveling mechanisms to identify principles

scientific article published on 19 December 2014

Environmental controls on the activity of aquifer microbial communities in the 300 area of the Hanford site

scientific article published on 6 September 2013

Estimating and mapping ecological processes influencing microbial community assembly

scientific article published on May 2015

Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142

scientific article

Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

scientific article

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing

scientific article published on 29 April 2014

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

scientific article published on 8 February 2018

Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone

scientific article published on 15 February 2013

Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

scientific article published on 7 March 2018

Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions

scientific article published on 30 September 2011

Quantifying community assembly processes and identifying features that impose them

scientific article

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer

scientific article published on February 2014

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer

scientific article

Stochastic and deterministic assembly processes in subsurface microbial communities

scientific article

Sustained H(2) production driven by photosynthetic water splitting in a unicellular cyanobacterium

scientific article

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth

scientific article published on 26 July 2016

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site

scientific article

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