List of works - J. Gordon Burleigh

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

scientific article

An ILP solution for the gene duplication problem

scientific article

Assessing approaches for inferring species trees from multi-copy genes

scientific article published on 23 December 2014

Assessing parameter identifiability in phylogenetic models using data cloning

scientific article

Building the "Plant Glossary"—A controlled botanical vocabulary using terms extracted from the Floras of North America and China

article

Building the avian tree of life using a large-scale, sparse supermatrix

scientific article published on 27 December 2014

Consensus properties for the deep coalescence problem and their application for scalable tree search

scientific article

Data access for the 1,000 Plants (1KP) project

scientific article

Deep phylogenetic incongruence in the angiosperm clade Rosidae

scientific article

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

scientific article

Duplications and losses in gene families of rust pathogens highlight putative effectors

scientific article

Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice

scientific article

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

scientific article

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

scientific article

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data

scientific article

Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms

scientific article

Evolution of the 3R-MYB Gene Family in Plants

scientific article

Finding our way through phenotypes

scientific article

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

scientific article (publication date: 17 February 2014)

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

scientific article (publication date: March 2011)

Identifying optimal incomplete phylogenetic data sets from sequence databases

scientific article

Improved heuristics for minimum-flip supertree construction.

scientific article published on January 2006

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

scientific article published in 2009

MatrixConverter: Facilitating construction of phenomic character matrices.

scientific article published on 9 February 2015

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

scientific article

Next-generation phenomics for the Tree of Life

scientific article (publication date: 26 June 2013)

PhyloFinder: an intelligent search engine for phylogenetic tree databases

scientific article

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

scientific article

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

scientific article

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

scientific article

Phylotranscriptomic analysis of the origin and early diversification of land plants

scientific article

Prospects for building the tree of life from large sequence databases

scientific article

Recurrent evolution of dioecy in bryophytes

scientific article

Robinson-Foulds Supertrees

scientific article (publication date: 24 February 2010)

Spectral partitioning of phylogenetic data sets based on compatibility

scientific article

Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets

scientific article

Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms

scholarly article

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

scientific article

Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots

scientific article

The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

scientific article

Triplet supertree heuristics for the tree of life

scientific article

Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.

scientific article

What makes a leaf tough? Patterns of correlated evolution between leaf toughness traits and demographic rates among 197 shade-tolerant woody species in a neotropical forest.

scientific article published on June 2011

List of works by J. Gordon Burleigh

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

An ILP solution for the gene duplication problem

Assessing approaches for inferring species trees from multi-copy genes

Assessing parameter identifiability in phylogenetic models using data cloning

Building the "Plant Glossary"—A controlled botanical vocabulary using terms extracted from the Floras of North America and China

Building the avian tree of life using a large-scale, sparse supermatrix

Consensus properties for the deep coalescence problem and their application for scalable tree search

Data access for the 1,000 Plants (1KP) project

Deep phylogenetic incongruence in the angiosperm clade Rosidae

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

Duplications and losses in gene families of rust pathogens highlight putative effectors

Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data

Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms

Evolution of the 3R-MYB Gene Family in Plants

Finding our way through phenotypes

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

Identifying optimal incomplete phylogenetic data sets from sequence databases

Improved heuristics for minimum-flip supertree construction.

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

MatrixConverter: Facilitating construction of phenomic character matrices.

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

Next-generation phenomics for the Tree of Life

PhyloFinder: an intelligent search engine for phylogenetic tree databases

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

Phylotranscriptomic analysis of the origin and early diversification of land plants

Prospects for building the tree of life from large sequence databases

Recurrent evolution of dioecy in bryophytes

Robinson-Foulds Supertrees

Spectral partitioning of phylogenetic data sets based on compatibility

Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets

Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots

The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

Triplet supertree heuristics for the tree of life

Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.

What makes a leaf tough? Patterns of correlated evolution between leaf toughness traits and demographic rates among 197 shade-tolerant woody species in a neotropical forest.