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List of works by Daphne Koller

3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes

scientific article

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

A complex-based reconstruction of the Saccharomyces cerevisiae interactome

scientific article

A module map showing conditional activity of expression modules in cancer

scientific article

A pluripotency signature predicts histologic transformation and influences survival in follicular lymphoma patients

scientific article published on 27 July 2009

A protein domain-based interactome network for C. elegans early embryogenesis

scientific article

Active Classification based on Value of Classifier ⬇️

scientific article published in January 2011

Active Learning for Parameter Estimation in Bayesian Networks ⬇️

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

scientific article

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness

scientific article published on 16 April 2013

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness

scientific article published on 2 July 2013

Apoptosis and other immune biomarkers predict influenza vaccineresponsiveness.

scientific article published on 8 September 2014

Approximate Learning of Dynamic Models ⬇️

Automated identification of pathways from quantitative genetic interaction data

scientific article

Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks

Cascaded Classification Models: Combining Models for Holistic Scene Understanding ⬇️

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

scientific article published on 23 December 2014

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

scientific article

Conservation and divergence in the transcriptional programs of the human and mouse immune systems

scientific article published on 4 February 2013

Convergent antibody signatures in human dengue

scientific article

Correction: The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies.

scientific article published on 30 December 2013

Correlation of preterm infant illness severity with placental histology

scientific article published on 16 January 2016

Coursera

online education technology company

Daphne Koller: What we're learning from online education

TEDGlobal 2012

Discovering Hidden Variables: A Structure-Based Approach ⬇️

Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires

scientific article published on 11 December 2013

Efficient Structure Learning of Markov Networks using L_1-Regularization ⬇️

scientific article published in January 2007

From promoter sequence to expression

From signatures to models: understanding cancer using microarrays

scientific article

Functional organization of the S. cerevisiae phosphorylation network

scientific article

Genovo: De Novo Assembly for Metagenomes ⬇️

scientific article published on March 1, 2011

High-resolution antibody dynamics of vaccine-induced immune responses

scientific article (publication date: April 2014)

Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements

scientific article

Identification of transcriptional regulators in the mouse immune system

scientific article

Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale ⬇️

Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification

scholarly article

Imputing gene expression from selectively reduced probe sets

scientific article

InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale

scientific article published on January 2007

Inferring Multidimensional Rates of Aging from Cross-Sectional Data

scientific article published on 01 April 2019

Integration of Early Physiological Responses Predicts Later Illness Severity in Preterm Infants ⬇️

scientific article published on September 8, 2010

Learning a Small Mixture of Trees ⬇️

scientific article published in January 2009

Learning a prior on regulatory potential from eQTL data

scientific article

Learning associative Markov networks

Link Prediction in Relational Data ⬇️

scientific article published in January 2004

Max-Margin Markov Networks ⬇️

scientific article published in January 2004

Max-margin classification of incomplete data ⬇️

scientific article published in January 2007

Modeling how students learn to program

Multi-agent influence diagrams for representing and solving games

Multiagent Planning with Factored MDPs ⬇️

Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge

scientific article

Parameter Estimation and Energy Minimization for Region-Based Semantic Segmentation

scientific article published on July 2015

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes

scientific article published on May 2014

Policy Search via Density Estimation ⬇️

Probabilistic Abstraction Hierarchies ⬇️

Probabilistic discovery of overlapping cellular processes and their regulation

scientific article

Probabilistic discovery of overlapping cellular processes and their regulation

Probabilistic graphical models: principles and techniques

book published in 2009

Probabilistic hierarchical clustering for biological data

Programming Pluralism: Using Learning Analytics to Detect Patterns in the Learning of Computer Programming

Region-based Segmentation and Object Detection ⬇️

scientific article published in January 2009

Reinforcement Learning Using Approximate Belief States ⬇️

scholarly article by Andres C. Rodriguez et al published 2000 in Advances in Neural Information Processing Systems 12

Self-Paced Learning for Latent Variable Models ⬇️

Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression

scientific article

Shape-Based Object Localization for Descriptive Classification

Sharing and Specificity of Co-expression Networks across 35 Human Tissues

scientific article

Sharing and specificity of co-expression networks across 35 human tissues

Shifting Weights: Adapting Object Detectors from Image to Video ⬇️

scientific article published in January 2012

Systematic analysis of breast cancer morphology uncovers stromal features associated with survival

scientific article published in November 2011

Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action

scientific article

Temporal and Cross-Subject Probabilistic Models for fMRI Prediction Tasks ⬇️

scientific article published in January 2007

The Correlated Correspondence Algorithm for Unsupervised Registration of Nonrigid Surfaces ⬇️

scientific article published in January 2005

The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies

scientific article

The Online Revolution: Learning Without Limits

scientific article published on 13 February 2024

The chemical genomic portrait of yeast: uncovering a phenotype for all genes

scientific article

The transcriptional landscape of αβ T cell differentiation

scientific article

Timing of gene expression responses to environmental changes

scientific article

Understanding tuberculosis epidemiology using structured statistical models

scientific article published in March 2004

Using Combinatorial Optimization within Max-Product Belief Propagation ⬇️

scientific article published in January 2007

Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains

scientific article

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