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List of works by Qiandong Zeng

A catalog of reference genomes from the human microbiome

scientific article

Analysis of high-throughput sequencing and annotation strategies for phage genomes

scientific article

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

scientific article

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

scientific article

Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection

scientific article

Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development

scientific article

Comparative functional genomics of the fission yeasts

scientific article

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives

scientific article

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis

scientific article

Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies

scientific article

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

scientific article published on January 2013

Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen

scientific article

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

scientific article

Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

scientific article

Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes

scientific article published on 13 May 2015

DNA sequence and analysis of human chromosome 18

scientific article

DNA sequence and analysis of human chromosome 8

scientific article

Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains

scientific article published on 20 August 2013

Erratum: Corrigendum: DNA sequence and analysis of human chromosome 18

scientific article published in Nature

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal

scientific article (publication date: September 2015)

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

scientific article

Evolutionary dynamics of the accessory genome of Listeria monocytogenes

scientific article

Full-length transcriptome assembly from RNA-Seq data without a reference genome

scientific article

Genome Sequence of Fusarium oxysporum f. sp. melonis Strain NRRL 26406, a Fungus Causing Wilt Disease on Melon

scientific article

Genome Sequence of Spizellomyces punctatus

scientific article published on 18 August 2016

Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251).

scientific article

Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.

scientific article

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

scientific article published on 22 February 2016

Genome sequence of Aedes aegypti, a major arbovirus vector

scientific article

Genome update of the dimorphic human pathogenic fungi causing paracoccidioidomycosis

scientific article

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

scientific article published on 6 February 2012

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

scientific article published on 9 February 2016

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

scientific article

High-quality draft genome sequences of 28 Enterococcus sp. isolates

scientific article

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

scientific article

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

scientific article

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.

scientific article

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

scientific article published on 17 January 2017

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

scientific article

Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta

scientific article

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

scientific article published on 16 June 2015

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia

scientific article published on 6 October 2015

The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes

scientific article published on 31 January 2020

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

scientific article

Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.

scientific article published on 21 February 2018

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