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List of works by Alisha K Holloway

"Reverse ecology" and the power of population genomics

scientific article

A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design.

scientific article

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

scientific article published on 15 February 2019

Accelerated Evolution of Enhancer Hotspots in the Mammal Ancestor

scientific article published on 29 December 2015

Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster

scientific article published on 26 June 2008

Adaptive gene expression divergence inferred from population genomics

scientific article

Chromatin remodelling complex dosage modulates transcription factor function in heart development

scientific article

Chromosomal haplotypes by genetic phasing of human families

scientific article

Developmental Loci Harbor Clusters of Accelerated Regions That Evolved Independently in Ape Lineages

scientific article published on 01 August 2018

Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules

scientific article

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

scientific article published on 12 September 2012

Experimental evolution of gene duplicates in a bacterial plasmid model

scientific article

Features that define the best ChIP-seq peak calling algorithms

scientific article

Genes Expressed in Specific Areas of the Human Fetal Cerebral Cortex Display Distinct Patterns of Evolution ⬇️

scientific article published on March 18, 2011

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

scientific article published on 29 July 2019

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster ⬇️

scientific article published on November 8, 2010

Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans

scientific article published on 12 August 2008

Genomic variation in natural populations of Drosophila melanogaster

scientific article published on 5 June 2012

Identification of differentially expressed microRNA in parathyroid tumors

scientific article

Long-read sequencing of chicken transcripts and identification of new transcript isoforms

scientific article

MiR-886-3p Regulates Cell Proliferation and Migration, and Is Dysregulated in Familial Non-Medullary Thyroid Cancer ⬇️

scientific article published on October 5, 2011

MicroRNA profiling of adrenocortical tumors reveals miR‐483 as a marker of malignancy ⬇️

scientific article published on November 8, 2010

Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila

scientific article

Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster

scientific article

Polyploids with different origins and ancestors form a single sexual polyploid species

scientific article published on 08 March 2006

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

scientific article

RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis

scientific article

Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans

scientific article

Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags

scientific article published on 15 December 2005

Relationship between numbers of the endangered American burying beetle Nicrophorus americanus Olivier (Coleoptera : Silphidae) and available food resources

scholarly article

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

motifDiverge: a model for assessing the statistical significance of gene regulatory motif divergence between two DNA sequences

scientific article

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