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List of works by James Borneman

A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients

scientific article published on 02 July 2016

A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn's Disease and Human Gut Microbiome Composition

scientific article

A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface.

scientific article

A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease

scientific article

A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells.

scientific article published on 25 April 2018

Abundant and diverse fungal microbiota in the murine intestine

scientific article

Algorithmic approaches to selecting control clones in DNA array hybridization experiments

scientific article

An In Vitro Pipeline for Screening and Selection of Citrus-Associated Microbiota with Potential Anti-"Candidatus Liberibacter asiaticus" Properties

scientific article published on 01 April 2020

Association of Systemic Sclerosis With a Unique Colonic Microbial Consortium

scientific article published on 8 January 2016

Autoimmune susceptibility gene <i>PTPN2</i> is required for clearance of adherent-invasive <i>Escherichia coli</i> by integrating bacterial uptake and lysosomal defence

scientific article published in 2021

Bacteria and bacterial rRNA genes associated with the development of colitis in IL-10(-/-) mice

scientific article published on August 2008

Bacteria associated with immunoregulatory cells in mice

scientific article

Bacterial Microbiome Dynamics in Post Pull-Through Hirschsprung-Associated Enterocolitis (HAEC): An Experimental Study Employing the Endothelin Receptor B-Null Mouse Model

scientific article published on 6 April 2018

Clustering Scatter Plots Using Data Depth Measures

scientific article

Commensal microbiota alter the abundance and TCR responsiveness of splenic naïve CD4+ T lymphocytes

scientific article published on 14 November 2005

Commensal microbiota and CD8+ T cells shape the formation of invariant NKT cells

scientific article

Concurrent gut transcriptome and microbiota profiling following chronic ethanol consumption in nonhuman primates

scientific article published on 27 April 2018

HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota

scientific article published on 12 October 2013

High Levels of Oxidative Stress Create a Microenvironment That Significantly Decreases the Diversity of the Microbiota in Diabetic Chronic Wounds and Promotes Biofilm Formation

scientific article published on 03 June 2020

Host–microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal–luminal interface ⬇️

scientific article published on June 22, 2011

Improved probe selection for DNA arrays using nonparametric kernel density estimation

scientific article published in January 2005

Improved resolution of bacteria by high throughput sequence analysis of the rRNA internal transcribed spacer

scientific article

Improving oligonucleotide fingerprinting of rRNA genes by implementation of polony microarray technology ⬇️

scientific article published on May 25, 2012

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

scientific article published on 05 June 2013

Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts

scientific article published on 04 August 2020

Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models

scientific article published on 05 March 2019

Microbial, metabolomic, and immunologic dynamics in a relapsing genetic mouse model of colitis induced by T-synthase deficiency

scientific article published on 22 November 2016

Neutral Zone Classifiers Using a Decision-Theoretic Approach With Application to DNA Array Analyses ⬇️

scientific article published on December 1, 2010

PRISE (PRImer SElector): software for designing sequence-selective PCR primers.

scientific article published on 23 December 2007

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism

scientific article

Resident enteric microbiota and CD8+ T cells shape the abundance of marginal zone B cells

scientific article published on December 2008

Su1880 RORγt-Dependent CD4+ T Cells Garden the Mucosa-Associated Microbiome of the Small Intestine and Colon

Systemic control of plasmacytoid dendritic cells by CD8+ T cells and commensal microbiota

scientific article

The Role of Coral-Associated Bacterial Communities in Australian Subtropical White Syndrome of Turbinaria mesenterina ⬇️

scientific article published on September 6, 2012

The autoimmune susceptibility gene, PTPN2, restricts expansion of a novel mouse adherent-invasive E. coli

scientific article published on 26 June 2020

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