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Authors whose works are in public domain in at least one jurisdiction

List of works by Janusz Bujnicki

1-50 of 327 results

MODOMICS: a database of RNA modification pathways--2013 update

scientific article

GeneSilico protein structure prediction meta-server

scientific article

Transcriptome profile of human colorectal adenomas

scientific article published in December 2007

MODOMICS: a database of RNA modification pathways. 2017 update

scientific article published on 2 November 2017

Pcons: a neural-network-based consensus predictor that improves fold recognition

scientific article

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins

scientific article

MODOMICS: a database of RNA modification pathways. 2008 update

scientific article published on 14 October 2008

IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-kappaB as well as cell survival and oncogenesis

scientific article published on 19 October 2008

MetaMQAP: a meta-server for the quality assessment of protein models

scientific article

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

scientific article published on 23 February 2012

MODOMICS: a database of RNA modification pathways

scientific article published in January 2006

ModeRNA: a tool for comparative modeling of RNA 3D structure

scientific article published on February 7, 2011

A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation

scientific article published on January 1, 2003

Streptococcal Scl1 and Scl2 proteins form collagen-like triple helices

scientific article published on 25 April 2002

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

scientific article published on 5 March 2007

Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB

scientific article

Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop

scientific article

The YTH domain is a novel RNA binding domain

scientific article

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

scientific article published on 16 April 2015

Structure of a multipartite protein-protein interaction domain in splicing factor prp8 and its link to retinitis pigmentosa

scientific article

Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase

scientific article

Phylogenomic analysis of the GIY-YIG nuclease superfamily

scientific article published on 28 April 2006

Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases

scientific article

A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase

scientific article

Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures

scientific article

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

scientific article published on 2 May 2008

Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA

scientific article

Computational methods for prediction of protein-RNA interactions

scientific article published on 12 October 2011

Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits

scientific article

RNAcentral: an international database of ncRNA sequences

scientific article

Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase

scientific article

Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily

scientific article published on 23 November 2004

RNAcentral: a comprehensive database of non-coding RNA sequences

scientific article (publication date: 4 January 2017)

ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure

scientific article

LiveBench-1: continuous benchmarking of protein structure prediction servers

scientific article

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

scientific article

In silico identification, structure prediction and phylogenetic analysis of the 2'-O-ribose (cap 1) methyltransferase domain in the large structural protein of ssRNA negative-strand viruses

scientific article published on 01 February 2002

DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking

scientific article published on August 18, 2011

Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria

scientific article

The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification

scientific article published on 23 January 2014

The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein

scientific article

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

scientific article

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function

scientific article published on 12 July 2005

Distribution and frequencies of post-transcriptional modifications in tRNAs

scientific article published on January 1, 2014

Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases

scientific article

FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.

scientific article published in January 2005

NPDock: a web server for protein-nucleic acid docking

scientific article

Phylogenetic analysis of haloalkane dehalogenases

scientific article published in May 2007

Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models

scientific article

Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi

scientific article