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List of works by Hirotada Mori

1P235 Comprehensive analysis on the effect of Escherichia coli ORFs on protein translation reaction(Bioinformatics-functional genomics,Poster Presentations)

scientific article published in 2007

A cAMP/CRP-controlled mechanism for the incorporation of extracellular ADP-glucose in Escherichia coli involving NupC and NupG nucleoside transporters

scientific article published in Scientific Reports

A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies

scientific article published on February 2005

A genome-wide approach to identify the genes involved in biofilm formation in E. coli

scientific article published on December 2007

A robust platform for chemical genomics in bacterial systems.

scientific article

Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite.

scientific article

Amplification of Hot DNA segments in Escherichia coli.

scientific article published in September 2002

Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout

scientific article published in October 2003

Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures

scientific article published on April 2004

Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure

scientific article

Analysis of metabolic and physiological responses to gnd knockout in Escherichia coli by using C-13 tracer experiment and enzyme activity measurement

scientific article published in March 2003

Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays

scientific article published in January 2003

Analyzing Phenotype Microarray Data for Escherichia coli Using an Infinite Relational Model

Application of capillary electrophoresis-mass spectrometry to synthetic in vitro glycolysis studies

scientific article published in July 2004

B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli

scholarly article

Cell Lysis Directed by SulA in Response to DNA Damage in Escherichia coli

scientific article published in 2021

Cell lysis directed by sigmaE in early stationary phase and effect of induction of the rpoE gene on global gene expression in Escherichia coli

scientific article published on 01 August 2005

Characterization of HscC (Hsc62), homologue of Hsp70 in Escherichia coli: over-expression of HscC modulates the activity of house keeping sigma factor sigma70

scientific article published on 01 June 2002

Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin ⬇️

scientific article published on 14 July 2017

Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli

scientific article

Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function

scientific article

Comparative Genomics and Drug Resistance of a Geographic Variant of ST239 Methicillin-Resistant Staphylococcus aureus Emerged in Russia ⬇️

scientific article published on January 19, 2012

Comparative analysis of argK-tox clusters and their flanking regions in phaseolotoxin-producing Pseudomonas syringae pathovars

scientific article published on 21 August 2006

Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments

scientific article published on 11 May 2010

Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes

scientific article published on June 2002

Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research

scientific article (publication date: 2005)

Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction

scientific article published on 2 May 2008

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling

scientific article published on 23 March 2016

Computational and systems biology

scientific article published on 06 November 2009

Conservation of Translation Initiation Sites Based on Dinucleotide Frequency and Codon Usage in Escherichia coli K-12 (W3110): Non-random Distribution of A/T-rich Sequences Immediately Upstream of the Translation Initiation Codon

scientific article published on 01 February 2002

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

scientific article

Correction: Comparative Genomics and Drug Resistance of a Geographic Variant of ST239 Methicillin-Resistant Staphylococcus aureus Emerged in Russia

scientific article (publication date: 6 August 2012)

Crucial roles of MicA and RybB as vital factors for σ-dependent cell lysis in Escherichia coli long-term stationary phase.

scientific article published on 16 April 2013

Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist

scientific article

Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli

scientific article

Detection of periodicity in eukaryotic genomes on the basis of power spectrum analysis

scientific article published on January 1, 2002

Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12.

scientific article published in January 2013

Distribution of Repetitive Sequences on the Leading and Lagging Strands of the Escherichia coli Genome: Comparative Study of Long Direct Repeat (LDR) Sequences

scientific article published on 01 February 2002

Dynamic simulation of an in vitro multi-enzyme system.

scientific article published on 12 January 2007

Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo

scientific article

Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate

scientific article published in April 2004

Effects of mutations in the rpoS gene on cell viability and global gene expression under nitrogen starvation in Escherichia coli.

scientific article

Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.

scientific article published in December 2010

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

scientific article

Escherichia coli proteome chips for detecting protein-protein interactions

scientific article published on December 2006

Escherichia coli response to exogenous pyrophosphate and analogs

scientific article published in January 2003

Escherichia coli with a linear genome

scientific article published on 12 January 2007

Essential core of protein-protein interaction network in Escherichia coli

scientific article published in April 2009

Evolved bacterial resistance against fluoropyrimidines can lower chemotherapy impact in the Caenorhabditis elegans host

scientific article published on 30 November 2020

Experimental and computational assessment of conditionally essential genes in Escherichia coli

scientific article

Extensive impact of non-antibiotic drugs on human gut bacteria

scientific article published on 19 March 2018

From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli

scientific article published on January 2004

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays

scientific article published in July 2005

General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG.

scientific article published on 15 October 2004

GenoBase: comprehensive resource database of Escherichia coli K-12

scientific article

Genome structure of the legume, Lotus japonicus

scientific article

Genome-Wide Screening with Hydroxyurea Reveals a Link between Nonessential Ribosomal Proteins and Reactive Oxygen Species Production.

scientific article published in August 2013

Genome-scale identification and characterization of moonlighting proteins

scientific article

Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli

scientific article

Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli

scientific article

Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family

scientific article published on 21 September 2006

Genome-wide screening of genes required for swarming motility in Escherichia coli K-12.

scientific article published on 22 November 2006

Genome-wide screening with hydroxyurea reveals a link between nonessential ribosomal proteins and reactive oxygen species production

scientific article published on 4 January 2013

GlgS, described previously as a glycogen synthesis control protein, negatively regulates motility and biofilm formation in Escherichia coli. ⬇️

scientific article published in June 2013

Glutathione production by efficient ATP-regenerating Escherichia coli mutants.

scientific article published on 6 June 2009

Glycogen is the primary source of glucose during the lag phase of E. coli proliferation ⬇️

scientific article published on June 27, 2012

GroEL chaperone binding to beetle luciferases and the implications for refolding when co-expressed

scientific article

HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination

scientific article

High-throughput fluorescence labelling of full-length cDNA products based on a reconstituted translation system.

scientific article

High-throughput, quantitative analyses of genetic interactions in E. coli

scientific article

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

scientific article

Hyperexpression of the osmB gene in an acidic phospholipid-deficient Escherichia coli mutant

scientific article

Identification and characterization of a second, inducible promoter of relA in Escherichia coli.

scientific article

Identification and functional analysis of Escherichia coli cysteine desulfhydrases

scientific article published on July 2005

Identification and molecular characterization of the Mg2+ stimulon of Escherichia coli

scientific article

Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.

scientific article

Identification of human calphoglin-induced phosphoglucomutase phosphorylation in Escherichia coli

scientific article published on 01 September 2005

Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model

scientific article

Identification of the two missing bacterial genes involved in thiamine salvage: thiamine pyrophosphokinase and thiamine kinase

scientific article

In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes.

scientific article published on 3 November 2016

Inhibitory effect of phosphoenolpyruvate on glycolytic enzymes in Escherichia coli.

scientific article published on 20 December 2006

Integrating reductive and synthetic approaches in biology using man-made cell-like compartments

scientific article

Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using (13)C metabolic flux analysis

scientific article published on 21 June 2012

KEGG-based pathway visualization tool for complex omics data

scientific article

Large-scale identification of protein-protein interaction of Escherichia coli K-12

scientific article

Metabolomic analysis of microorganisms

scientific article published on 04 January 2008

Metabolomics approach for enzyme discovery.

scientific article

Molecular basis of formaldehyde detoxification. Characterization of two S-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG

scientific article published on 27 March 2006

Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli

scientific article (publication date: July 2002)

Multiple high-throughput analyses monitor the response of E. coli to perturbations

scientific article

Optimization of RK2-based gene introduction system for Bacillus subtilis

scientific article published on 05 June 2019

P-BOSS: a new filtering method for treasure hunting in metabolomics

scientific article

Past, Present, and Future of Genome Modification in Escherichia coli

scientific article published in 2022

Peptidase activity of the Escherichia coli Hsp31 chaperone

scientific article published on 18 November 2004

Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis

scientific article published on 01 October 2002

Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology

scientific article published in January 2008

Predicting essential genes based on network and sequence analysis.

scientific article

Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts

scientific article published on December 2003

Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

scientific article

Role of phosphoenolpyruvate in the NADP-isocitrate dehydrogenase and isocitrate lyase reaction in Escherichia coli

scientific article published on December 2006

Signal transduction cascade between EvgA/EvgS and PhoP/PhoQ two-component systems of Escherichia coli

scientific article published on May 2004

Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation.

scientific article

Systematic genome-wide scanning for genes involved in ATP generation in Escherichia coli

scientific article

Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism.

scientific article published on 15 September 2009

Systematic production of inactivating and non-inactivating suppressor mutations at the relA locus that compensate the detrimental effects of complete spot loss and affect glycogen content in Escherichia coli

scientific article

The ATPase domain of HscC (DnaK homolog) is essential for interfering sigma70 activity in E. coli.

scientific article

The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology

scientific article

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

scientific article published in January 2008

The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12.

scientific article

The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli

scientific article

The outer membrane TolC is involved in cysteine tolerance and overproduction in Escherichia coli

scientific article published on 17 September 2008

The protein network of bacterial motility

scientific article

The tRNA Thiolation Pathway Modulates the Intracellular Redox State in Escherichia coli ⬇️

scientific article published on March 1, 2013

The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase

scientific article

Toward Network Biology in E. coli Cell

scientific article published in January 2015

Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli ⬇️

scientific article published on October 1, 2003

Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12.

scientific article

Two-component system VraSR positively modulates the regulation of cell-wall biosynthesis pathway in Staphylococcus aureus

scientific article

Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing

scientific article

Update of thermotolerant genes essential for survival at a critical high temperature in Escherichia coli

scientific article published on 27 February 2018

Update on the Keio collection of Escherichia coli single-gene deletion mutants

scientific article published on 22 December 2009

Use of GFP tags to monitor localization of different luciferases in E. coli

scientific article published on 9 June 2005

What hath DNA wrought? CRISPR-CAS gene silencing and engineering from bacteria to humans: comment on "Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems" by Edwin L. Cooper and Nicola Overst

scientific article published on 12 December 2013

[Proteome analysis using MALDI-TOF MS]

scientific article published on 01 May 2003

eSGA: E. coli synthetic genetic array analysis

scientific article

iML1515, a knowledgebase that computes Escherichia coli traits.

scientific article published in October 2017

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