List of works - Masahiro Shirakawa

1H, 13C and '5N resonance assignments of GABARAP, GABAA receptor associated protein

scientific article

A Common Substrate Recognition Mode Conserved between Katanin p60 and VPS4 Governs Microtubule Severing and Membrane Skeleton Reorganization

scientific article

A molecular basis for the selective recognition of 2-hydroxy-dATP and 8-oxo-dGTP by human MTH1

scientific journal article

Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies

scientific article

Crystal structure of SUMO-3-modified thymine-DNA glycosylase

scientific journal article

Crystal structure of thymine DNA glycosylase conjugated to SUMO-1

scientific journal article

Effect of Ca2+ on the microtubule-severing enzyme p60-katanin. Insight into the substrate-dependent activation mechanism

scientific journal article

F 1 F 2-selective NMR spectroscopy.

scientific article

Functional assessment of the mutational effects of human IRAK4 and MyD88 genes

scientific article

Methylated DNA-binding domain 1 and methylpurine-DNA glycosylase link transcriptional repression and DNA repair in chromatin

scientific article

Molecular mechanism of a temperature-sensitive phenotype in peroxisomal biogenesis disorder

scientific article

NMR protein structure determination in living E. coli cells using nonlinear sampling

scientific article

Protein structure determination in living cells by in-cell NMR spectroscopy

scientific article

Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

scientific article

Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1

scientific article

Role of the UBL-UBA protein KPC2 in degradation of p27 at G1 phase of the cell cycle

scientific article

Role of tryptophan residues in the recognition of mutagenic oxidized nucleotides by human antimutator MTH1 protein

scientific article (publication date: 24 May 2002)

Selective Labeling of Proteins on Living Cell Membranes Using Fluorescent Nanodiamond Probes

scientific article (publication date: 25 March 2016)

Small ubiquitin-like modifier 1 (SUMO-1) modification of the synergy control motif of Ad4 binding protein/steroidogenic factor 1 (Ad4BP/SF-1) regulates synergistic transcription between Ad4BP/SF-1 and Sox9

scientific article

Solution Structure of the Ubiquitin-associated (UBA) Domain of Human Autophagy Receptor NBR1 and Its Interaction with Ubiquitin and Polyubiquitin

scientific article

Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 chitinase A1

scientific article

Structural Basis of the Versatile DNA Recognition Ability of the Methyl-CpG Binding Domain of Methyl-CpG Binding Domain Protein 4 ⬇️

scientific article published on January 10, 2013

Structural analysis of proteins in living eukaryotic cells using magnetic resonance spectroscopy

scientific article

Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain

scientific article

Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45

scientific article

Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling

scientific article

Structural characterization of the MIT domain from human Vps4b

scientific article

Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments

scientific article

Structure and Function of the N-terminal Nucleolin Binding Domain of Nuclear Valosin-containing Protein-like 2 (NVL2) Harboring a Nucleolar Localization Signal ⬇️

scientific article

Structure and Mutagenesis Studies of the C-terminal Region of Licensing Factor Cdt1 Enable the Identification of Key Residues for Binding to Replicative Helicase Mcm Proteins

scientific article

Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates

scientific journal article

Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.

scientific article

Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B ⬇️

scientific article published on October 29, 2003

Structure of the male determinant factor for Brassica self-incompatibility

scientific article

Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3

scientific article

TRAM is involved in IL-18 signaling and functions as a sorting adaptor for MyD88

scientific article

The PRESAT-vector: asymmetric T-vector for high-throughput screening of soluble protein domains for structural proteomics

scientific article published in March 2004

The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold

scientific article

The structure and binding mode of interleukin-18 ⬇️

scientific article published on October 5, 2003

List of works by Masahiro Shirakawa

1H, 13C and '5N resonance assignments of GABARAP, GABAA receptor associated protein

A Common Substrate Recognition Mode Conserved between Katanin p60 and VPS4 Governs Microtubule Severing and Membrane Skeleton Reorganization

A molecular basis for the selective recognition of 2-hydroxy-dATP and 8-oxo-dGTP by human MTH1

Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies

Crystal structure of SUMO-3-modified thymine-DNA glycosylase

Crystal structure of thymine DNA glycosylase conjugated to SUMO-1

Effect of Ca2+ on the microtubule-severing enzyme p60-katanin. Insight into the substrate-dependent activation mechanism

F 1 F 2-selective NMR spectroscopy.

Functional assessment of the mutational effects of human IRAK4 and MyD88 genes

Methylated DNA-binding domain 1 and methylpurine-DNA glycosylase link transcriptional repression and DNA repair in chromatin

Molecular mechanism of a temperature-sensitive phenotype in peroxisomal biogenesis disorder

NMR protein structure determination in living E. coli cells using nonlinear sampling

Protein structure determination in living cells by in-cell NMR spectroscopy

Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1

Role of the UBL-UBA protein KPC2 in degradation of p27 at G1 phase of the cell cycle

Role of tryptophan residues in the recognition of mutagenic oxidized nucleotides by human antimutator MTH1 protein

Selective Labeling of Proteins on Living Cell Membranes Using Fluorescent Nanodiamond Probes

Small ubiquitin-like modifier 1 (SUMO-1) modification of the synergy control motif of Ad4 binding protein/steroidogenic factor 1 (Ad4BP/SF-1) regulates synergistic transcription between Ad4BP/SF-1 and Sox9

Solution Structure of the Ubiquitin-associated (UBA) Domain of Human Autophagy Receptor NBR1 and Its Interaction with Ubiquitin and Polyubiquitin

Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 chitinase A1

Structural Basis of the Versatile DNA Recognition Ability of the Methyl-CpG Binding Domain of Methyl-CpG Binding Domain Protein 4 ⬇️

Structural analysis of proteins in living eukaryotic cells using magnetic resonance spectroscopy

Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain

Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45

Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling

Structural characterization of the MIT domain from human Vps4b

Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments

Structure and Function of the N-terminal Nucleolin Binding Domain of Nuclear Valosin-containing Protein-like 2 (NVL2) Harboring a Nucleolar Localization Signal ⬇️

Structure and Mutagenesis Studies of the C-terminal Region of Licensing Factor Cdt1 Enable the Identification of Key Residues for Binding to Replicative Helicase Mcm Proteins

Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates

Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.

Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B ⬇️

Structure of the male determinant factor for Brassica self-incompatibility

Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3

TRAM is involved in IL-18 signaling and functions as a sorting adaptor for MyD88

The PRESAT-vector: asymmetric T-vector for high-throughput screening of soluble protein domains for structural proteomics

The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold

The structure and binding mode of interleukin-18 ⬇️