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List of works by Tomoyoshi Soga

A FLCN-TFE3 Feedback Loop Prevents Excessive Glycogenesis and Phagocyte Activation by Regulating Lysosome Activity

scientific article published on 01 February 2020

A Metabologenomic Approach Reveals Changes in the Intestinal Environment of Mice Fed on American Diet ⬇️

scientific article published on 17 December 2018

A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice

scientific article published on 29 September 2018

A Yeast Metabolite Extraction Protocol Optimised for Time-Series Analyses ⬇️

scientific article published on August 29, 2012

A medium-chain fatty acid as an alternative energy source in mouse preimplantation development.

scientific article

A serum metabolomics-based profile in low bone mineral density postmenopausal women

scientific article published on 29 October 2016

A systematic survey of in vivo obligate chaperonin-dependent substrates

scientific article published on April 2010

Abundant Nucleostemin Expression Supports the Undifferentiated Properties of Germ Cell Tumors ⬇️

scientific article published on August 1, 2013

Acquisition of chemoresistance to gemcitabine is induced by a loss-of-function missense mutation of DCK.

scientific article published on 18 July 2015

Adaptation to HIF1α Deletion in Hypoxic Cancer Cells by Upregulation of GLUT14 and Creatine Metabolism

scientific article published on 18 March 2019

Adenosine leakage from perforin-burst extracellular vesicles inhibits perforin secretion by cytotoxic T-lymphocytes

scientific article published on 10 April 2020

Alteration of metabolomic profiles by titanium dioxide nanoparticles in human gingivitis model

scientific article published on 22 April 2015

Amino Acid Analysis by Capillary Electrophoresis-Mass Spectrometry

scientific article published on 01 January 2019

Amino acid analysis by capillary electrophoresis-mass spectrometry

scientific article published on 01 January 2012

Analysis of nucleotides by pressure-assisted capillary electrophoresis-mass spectrometry using silanol mask technique.

scientific article published on 18 May 2007

Application of capillary electrophoresis-mass spectrometry to synthetic in vitro glycolysis studies

scientific article published in July 2004

Association between dyslipidemia and plasma levels of branched-chain amino acids in the Japanese population without diabetes mellitus

scientific article published on 11 September 2019

Autophagy regulates lipid metabolism through selective turnover of NCoR1

scientific article published on 05 April 2019

BCAA catabolism in brown fat controls energy homeostasis through SLC25A44

scientific article published on 21 August 2019

Basigin deficiency prevents anaplerosis and ameliorates insulin resistance and hepatosteatosis

scientific article published in 2021

Beta-galactosidase-responsive synthetic biomarker for targeted tumor detection

scientific article published on 01 October 2018

Biochemical and functional characterization of novel NADH kinase in the enteric protozoan parasite Entamoeba histolytica

scientific article published on 13 October 2012

Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis

scientific article

CBIO-12. GTP METABOLIC SWITCH LEADS TO NUCLEOLAR TRANSFORMATION AND MALIGNANT GROWTH OF GLIOBLASTOMA

scientific article published on 6 November 2017

CBIO-37DYNAMIC ROLE OF GTP-ENERGY METABOLISM IN GLIOMAGENESIS: DIAGNOSTIC AND THERAPEUTIC APPLICATIONS.

scientific article

Cancer stem-like properties and gefitinib resistance are dependent on purine synthetic metabolism mediated by the mitochondrial enzyme MTHFD2

scientific article published on 07 December 2018

Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles

scientific article

Capillary electrophoresis-mass spectrometry-based metabolome analysis of serum and saliva from neurodegenerative dementia patients

scientific article published on 6 September 2013

Capillary electrophoresis-mass spectrometry.

scientific article

Changes in the charged metabolite and sugar profiles of pasteurized and unpasteurized Japanese sake with storage

scientific article published on 06 March 2012

Changes of liver metabolites following hepatectomy with ischemia reperfusion towards liver regeneration.

scientific article

Changes of metabolic profiles in an oral squamous cell carcinoma cell line induced by eugenol

scientific article published on March 2013

Characterization of cancer omics and drug perturbations in panels of lung cancer cells

scientific article published on 20 December 2019

Chlorogonium complexumsp. nov. (Volvocales, Chlorophyceae), and morphological evolution ofChlorogonium

Comparative analysis of cerebrospinal fluid metabolites in Alzheimer's disease and idiopathic normal pressure hydrocephalus in a Japanese cohort.

scientific article published on 22 January 2018

Comparative metabolite profiling of foxglove aphids (Aulacorthum solani Kaltenbach) on leaves of resistant and susceptible soybean strains

scientific article

Comprehensive Dipeptide Profiling and Quantitation by Capillary Electrophoresis and Liquid Chromatography Coupled with Tandem Mass Spectrometry

scientific article published on 15 June 2020

Correlation between sensory evaluation scores of Japanese sake and metabolome profiles

scientific article published on 01 January 2010

Cystathionine beta-synthase as a carbon monoxide-sensitive regulator of bile excretion

scientific article

Cystathionine is a novel substrate of cystine/glutamate transporter: implications for immune function

scientific article published on 20 February 2015

Cytotoxic effect of amide derivatives of trifluoromethionine against the enteric protozoan parasite Entamoeba histolytica

scientific article published on 12 November 2009

Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus

scientific article published on 03 April 2009

Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS.

scientific article

Development of bottom-fermenting saccharomyces strains that produce high SO2 levels, using integrated metabolome and transcriptome analysis

scientific article published on 29 February 2008

Development of quantitative method for determination of γ-glutamyl peptides by capillary electrophoresis tandem mass spectrometry: an efficient approach avoiding matrix effect

scientific article published on 12 October 2014

Differences in peritoneal solute transport rates in peritoneal dialysis

scientific article published on 02 July 2018

Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption ⬇️

scientific article

Direct measurement of isotopomer of intracellular metabolites using capillary electrophoresis time-of-flight mass spectrometry for efficient metabolic flux analysis

scientific article

Disruption of HIF-1α in hepatocytes impairs glucose metabolism in diet-induced obesity mice.

scientific article published on 22 October 2011

Distinct requirements for energy metabolism in mouse primordial germ cells and their reprogramming to embryonic germ cells

scientific article published on 17 July 2017

Dramatic Increase in Glycerol Biosynthesis upon Oxidative Stress in the Anaerobic Protozoan Parasite Entamoeba histolytica ⬇️

scientific article published on September 27, 2012

Dynamic simulation and metabolome analysis of long-term erythrocyte storage in adenine-guanosine solution

scientific article

Dynamics of serum metabolites in patients with chronic hepatitis C receiving pegylated interferon plus ribavirin: a metabolomics analysis

scientific article published on 15 August 2013

Effect of masticatory stimulation on the quantity and quality of saliva and the salivary metabolomic profile.

scientific article published on 15 August 2017

Effect of storage conditions on salivary polyamines quantified via liquid chromatography-mass spectrometry

scientific article published in Scientific Reports

Effects of 3-styrylchromones on metabolic profiles and cell death in oral squamous cell carcinoma cells

scientific article published on 4 December 2015

Effects of feed crops and boiling on chicken egg yolk and white determined by a metabolome analysis

scientific article published on 18 May 2020

Effects of inter-day and intra-day variation on salivary metabolomic profiles

scientific article published on 24 November 2018

Effects of processing and storage conditions on charged metabolomic profiles in blood

scientific article published on 28 March 2015

Elevated Polyamines in Saliva of Pancreatic Cancer

Elevated Polyamines in Saliva of Pancreatic Cancer.

scientific article

Erratum to: Metabolomic profiling reveals novel biomarkers of alcohol intake and alcohol-induced liver injury in community-dwelling men.

scientific article

Evaluation of metabolic alteration in transgenic rice overexpressing dihydroflavonol-4-reductase

scientific article published on 18 July 2006

Folliculin Regulates Osteoclastogenesis Through Metabolic Regulation.

scientific article published on 26 June 2018

Fructose increases the activity of sodium hydrogen exchanger in renal proximal tubules that is dependent on ketohexokinase

scientific article published on 08 June 2019

GTP-dependent RNA 3'-terminal phosphate cyclase from the hyperthermophilic archaeon Pyrococcus furiosus.

scientific article

Genetic, metabolomic and transcriptomic analyses of the de novo L-cysteine biosynthetic pathway in the enteric protozoan parasite Entamoeba histolytica

scientific article published on 15 November 2017

Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol

scientific article published in January 2014

Global metabolic reprogramming of colorectal cancer occurs at adenoma stage and is induced by MYC.

scientific article published on 28 August 2017

Global metabolomic analysis of heart tissue in a hamster model for dilated cardiomyopathy ⬇️

scientific article published on February 20, 2013

Glycogen is the primary source of glucose during the lag phase of E. coli proliferation ⬇️

scientific article published on June 27, 2012

HIF-1alpha is necessary to support gluconeogenesis during liver regeneration.

scientific article published on 28 July 2009

Human blood metabolite timetable indicates internal body time

scientific article

HybGFS: a hybrid method for genome-fingerprint scanning

scientific article

Hypotaurine is an Energy-Saving Hepatoprotective Compound against Ischemia-Reperfusion Injury of the Rat Liver

scientific article

IMP dehydrogenase-2 drives aberrant nucleolar activity and promotes tumorigenesis in glioblastoma

scientific article published on 01 August 2019

Identification of salivary metabolomic biomarkers for oral cancer screening

scientific article published on 19 August 2016

In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods

scientific article published on 18 August 2009

Index markers of chronic fatigue syndrome with dysfunction of TCA and urea cycles.

scientific article published on 11 October 2016

Intensive DNA Replication and Metabolism during the Lag Phase in Cyanobacteria

scientific article published on 2 September 2015

Lacking ketohexokinase-A exacerbates renal injury in streptozotocin-induced diabetic mice

scientific article published on 29 March 2018

Large-scale prediction of cationic metabolite identity and migration time in capillary electrophoresis mass spectrometry using artificial neural networks

scientific article published in January 2005

MMMDB: Mouse Multiple Tissue Metabolome Database

scientific article published on December 2011

Mass spectrometric analysis of L-cysteine metabolism: physiological role and fate of L-cysteine in the enteric protozoan parasite Entamoeba histolytica

scientific article

MassBank: a public repository for sharing mass spectral data for life sciences

scientific article (publication date: 7 July 2010)

MathDAMP: a package for differential analysis of metabolite profiles

scientific article

Measurement of internal body time by blood metabolomics.

scholarly article

Metabolic Characterization of Antifolate Responsiveness and Non-responsiveness in Malignant Pleural Mesothelioma Cells

Metabolic Profiling of Total Physical Activity and Sedentary Behavior in Community-Dwelling Men.

scientific article

Metabolic Profiling to Identify Potential Serum Biomarkers for Gastric Ulceration Induced by Nonsteroid Anti-Inflammatory Drugs ⬇️

scientific article published on February 6, 2013

Metabolic and morphological changes of an oil accumulating trebouxiophycean alga in nitrogen-deficient conditions.

scientific article published on 29 September 2012

Metabolic profiling of the protozoan parasite Entamoeba invadens revealed activation of unpredicted pathway during encystation

scientific article

Metabolic profiling reveals new serum biomarkers for differentiating diabetic nephropathy

scientific article published on 29 September 2012

Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli

scientific article published on 16 April 2009

Metabolome Analysis Revealed Increase in S-Methylcysteine and Phosphatidylisopropanolamine Synthesis upon l-Cysteine Deprivation in the Anaerobic Protozoan Parasite Entamoeba histolytica ⬇️

scientific article published on October 5, 2010

Metabolome analysis of erythrocytes from patients with chronic hepatitis C reveals the etiology of ribavirin-induced hemolysis

scientific article published on 09 September 2013

Metabolome profiling of various seaweed species discriminates between brown, red, and green algae

scientific article published on 19 March 2019

Metabolomic Profiling as a Possible Reverse Engineering Tool for Estimating Processing Conditions of Dry-Cured Hams

scientific article

Metabolomic alterations in human cancer cells by vitamin C-induced oxidative stress

scientific article published on 9 September 2015

Metabolomic anatomy of an animal model revealing homeostatic imbalances in dyslipidaemia ⬇️

scientific article published on January 24, 2011

Metabolomic profiles and sensory attributes of edamame under various storage duration and temperature conditions

scientific article published in July 2010

Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry

scientific article published on 01 August 2009

Metabolomic profiling of lung and prostate tumor tissues by capillary electrophoresis time-of-flight mass spectrometry.

scientific article published on 2 November 2012

Metabolomic profiling of the response of susceptible and resistant soybean strains to foxglove aphid, Aulacorthum solani Kaltenbach

scientific article

Metabolomic profiling rationalized pyruvate efficacy in cybrid cells harboring MELAS mitochondrial DNA mutations ⬇️

scientific article published on August 4, 2012

Metabolomic profiling reveals novel biomarkers of alcohol intake and alcohol-induced liver injury in community-dwelling men

scientific article

Metabolomic profiling reveals salivary hypotaurine as a potential early detection marker for medication-related osteonecrosis of the jaw

scientific article published on 12 August 2019

Metabolomic study of Chilean biomining bacteria Acidithiobacillus ferrooxidans strain Wenelen and Acidithiobacillus thiooxidans strain Licanantay.

scientific article published on 21 July 2012

Metabolomics Platform with Capillary Electrophoresis Coupled with High-Resolution Mass Spectrometry for Plasma Analysis

scientific article published on 24 December 2018

Metabolomics approach for enzyme discovery.

scientific article

Metabolomics-based profiles predictive of low bone mass in menopausal women.

scientific article

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

scientific article published on 06 June 2019

Microelectrospray interface with coaxial sheath flow for high-resolution capillary electrophoresis/mass spectrometry separation

scientific article published on 01 January 2007

Microhomology-assisted scarless genome editing in human iPSCs.

scientific article published on 5 March 2018

Mitochondrial dysfunction associated with increased oxidative stress and α-synuclein accumulation in PARK2 iPSC-derived neurons and postmortem brain tissue

scientific article published on 6 October 2012

Model-based definition of population heterogeneity and its effects on metabolism in sporulating Bacillus subtilis

scientific article

Mono-(2-ethylhexyl) phthalate targets glycogen debranching enzyme and affects glycogen metabolism in rat testis

scientific article published on 23 February 2009

Multiple high-throughput analyses monitor the response of E. coli to perturbations

scientific article

Mutant IDH1 confers resistance to energy stress in normal biliary cells through PFKP-induced aerobic glycolysis and AMPK activation

scientific article published on 11 December 2019

P-BOSS: a new filtering method for treasure hunting in metabolomics

scientific article

Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells

scientific article published on 04 May 2020

Perioperative serum and urine metabolome analyses in patients with hepatocellular carcinoma undergoing partial hepatectomy

scientific article published on 07 August 2018

Pharmacologically targetable vulnerability in prostate cancer carrying RB1-SUCLA2 deletion

scientific article published on 21 July 2020

Phosphoethanolamine Accumulation Protects Cancer Cells under Glutamine Starvation through Downregulation of PCYT2

scientific article published on 01 October 2019

Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles ⬇️

scientific article published on 30 September 2012

Pilot study of changes in salivary metabolic profiles induced by template therapy.

scientific article published in November 2012

Polymer entrapment in polymerized silicate for preparing highly stable capillary coatings for CE and CE-MS.

scientific article published on 8 September 2007

Positive Autoregulation Delays the Expression Phase of Mammalian Clock Gene Per2 ⬇️

scientific article published on April 14, 2011

Potential biomarkers of fatigue identified by plasma metabolome analysis in rats

scientific article published on 20 March 2015

Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks.

scientific article published in December 2006

Prediction of metabolite identity from accurate mass, migration time prediction and isotopic pattern information in CE-TOFMS data

scientific article

Pressure-assisted capillary electrophoresis electrospray ionization mass spectrometry for analysis of multivalent anions

scientific article

Profiling of plasma metabolites in postmenopausal women with metabolic syndrome

scientific article published on 11 April 2016

Proteomic and metabolomic analyses uncover sex-specific regulatory pathways in mouse fetal germline differentiation

scientific article published on 06 July 2020

Publisher Correction: Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells

scientific article published on 18 May 2020

Qualitative and quantitative analysis of amino acids by capillary electrophoresis-electrospray ionization-tandem mass spectrometry.

scientific article published in July 2004

Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass Spectrometry ⬇️

scientific article published on September 1, 2003

Quantitative metabolome profiling of colon and stomach cancer microenvironment by capillary electrophoresis time-of-flight mass spectrometry.

scientific article

Regulation of glycolysis by Pdk functions as a metabolic checkpoint for cell cycle quiescence in hematopoietic stem cells

scientific article published in January 2013

Relationship between Standard Uptake Values of Positron Emission Tomography/Computed Tomography and Salivary Metabolites in Oral Cancer: A Pilot Study

scientific article published on 07 December 2020

Reliability of plasma polar metabolite concentrations in a large-scale cohort study using capillary electrophoresis-mass spectrometry.

scientific article published on 18 January 2018

Rescue of anaemia and autoimmune responses in SOD1-deficient mice by transgenic expression of human SOD1 in erythrocytes.

scientific article

Roles of hemoglobin Allostery in hypoxia-induced metabolic alterations in erythrocytes: simulation and its verification by metabolome analysis

scientific article published on 8 February 2007

SLCO4C1 transporter eliminates uremic toxins and attenuates hypertension and renal inflammation

scientific article published on 29 October 2009

Selective inhibition of mutant IDH1 by DS-1001b ameliorates aberrant histone modifications and impairs tumor activity in chondrosarcoma

scientific article published on 12 August 2019

Self-enhancement of hepatitis C virus replication by promotion of specific sphingolipid biosynthesis

scientific article

Sensory properties and metabolomic profiles of dry-cured ham during the ripening process

scientific article published on 30 November 2019

Serum Glycerophosphate Levels are Increased in Japanese Men with Type 2 Diabetes ⬇️

scientific article published on March 15, 2012

Serum Metabolomic Profiles for Human Pancreatic Cancer Discrimination

scientific article published on 4 April 2017

Serum metabolome profiles characterized by patients with hepatocellular carcinoma associated with hepatitis B and C.

scientific article published on July 2016

Serum metabolomics reveals γ-glutamyl dipeptides as biomarkers for discrimination among different forms of liver disease

scientific article published on 18 February 2011

Sheathless capillary electrophoresis-mass spectrometry with a high-sensitivity porous sprayer for cationic metabolome analysis ⬇️

scientific article published on September 24, 2012

Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry

scientific article published in May 2002

Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection

scientific article published on 4 August 2004

Smad2/3 Proteins Are Required for Immobilization-induced Skeletal Muscle Atrophy

scientific article published on 15 April 2016

Synthetic Biomarker Design by Using Analyte-Responsive Acetaminophen

scientific article published on 25 February 2017

The Consumption of Bicarbonate-Rich Mineral Water Improves Glycemic Control

scientific article

The dynamics of cellular energetics during continuous yeast culture

scientific article published in January 2013

The guanylate cyclase C agonist linaclotide ameliorates the gut-cardio-renal axis in an adenine-induced mouse model of chronic kidney disease

scientific article published on 01 February 2020

The use of a double coaxial electrospray ionization sprayer improves the peak resolutions of anionic metabolites in capillary ion chromatography-mass spectrometry

scientific article published on 23 January 2020

Therapeutic Strategy for Targeting Aggressive Malignant Gliomas by Disrupting Their Energy Balance.

scientific article

Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program

scientific article published on September 2014

Time-resolved metabolomics of a novel trebouxiophycean alga using (13)CO2 feeding

scientific article published on 23 May 2013

Time-resolved metabolomics reveals metabolic modulation in rice foliage

scientific article published on 18 June 2008

Two atypical L-cysteine-regulated NADPH-dependent oxidoreductases involved in redox maintenance, L-cystine and iron reduction, and metronidazole activation in the enteric protozoan Entamoeba histolytica

scientific article

UCP1-independent signaling involving SERCA2b-mediated calcium cycling regulates beige fat thermogenesis and systemic glucose homeostasis.

scientific article

Unveiling cellular biochemical reactions via metabolomics-driven approaches

scientific article published on 27 April 2010

Urinary Polyamine Biomarker Panels with Machine-Learning Differentiated Colorectal Cancers, Benign Disease, and Healthy Controls

scientific article published on 7 March 2018

Visualization of three-way comparisons of omics data

scientific article

[Analytical system for metabolomics]

scientific article published on 01 August 2004

[Metabolomics: system for genome interacting with environments through chemical substances]

scientific article published on 01 December 2005

mTORC1 is essential for leukemia propagation but not stem cell self-renewal ⬇️

scientific article published on May 24, 2012

p38α Activates Purine Metabolism to Initiate Hematopoietic Stem/Progenitor Cell Cycling in Response to Stress.

scientific article published on 21 June 2016

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