List of works - Anne Condon

A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures

scientific article

A new algorithm for RNA secondary structure design

scientific article

A thermodynamic approach to designing structure-free combinatorial DNA word sets.

scientific article

AlignOT: An Optimal Transport Based Algorithm for Fast 3D Alignment With Applications to Cryogenic Electron Microscopy Density Maps

scientific article published on 27 October 2023

An O(n(5)) algorithm for MFE prediction of kissing hairpins and 4-chains in nucleic acids.

scientific article published in June 2009

An algorithm for the energy barrier problem without pseudoknots and temporary arcs.

scientific article published in January 2010

Analysis of energy-based algorithms for RNA secondary structure prediction

scientific article

Approximate majority analyses using tri-molecular chemical reaction networks

scientific article published on 8 August 2019

Automata make antisense

scientific article published in May 2004

Computational RNA secondary structure design: empirical complexity and improved methods

scientific article

Computational approaches for RNA energy parameter estimation

scientific article

Design of nucleic acid strands with long low-barrier folding pathways

scientific article

Designed DNA molecules: principles and applications of molecular nanotechnology

scientific article published on 13 June 2006

Efficient parameter estimation for RNA secondary structure prediction

scientific article published in July 2007

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data

scientific article

Floodplain methylmercury biomagnification factor higher than that of the contiguous river (South River, Virginia USA) ⬇️

scientific article published on May 31, 2011

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

scientific article published on October 2005

Improved free energy parameters for RNA pseudoknotted secondary structure prediction

scientific article

Initial association of NR2E1 with bipolar disorder and identification of candidate mutations in bipolar disorder, schizophrenia, and aggression through resequencing

scientific article published in September 2008

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

scientific article

Less haste, less waste: on recycling and its limits in strand displacement systems

scientific article published on 15 February 2012

Molecular programming: DNA and the brain

scientific article published on 20 July 2011

Novel and efficient RNA secondary structure prediction using hierarchical folding

scientific article published in March 2008

Parsing nucleic acid pseudoknotted secondary structure: algorithm and applications.

scientific article published in January 2007

RNA STRAND: the RNA secondary structure and statistical analysis database

scientific article

RNAsoft: A suite of RNA secondary structure prediction and design software tools ⬇️

scientific article

Random Debaters and the Hardness of Approximating Stochastic Functions

Reachability bounds for chemical reaction networks and strand displacement systems

scientific article published on January 2014

Reasoning about optimal stable matchings under partial information

Revenue monotonicity in combinatorial auctions

Revenue monotonicity in deterministic, dominant-strategy combinatorial auctions

Secondary structure prediction of interacting RNA molecules

scientific article published on 16 December 2004

Stepwise Randomized Combinatorial Auctions Achieve Revenue Monotonicity

Strand design for biomolecular computation

article by Arwen Brenneman & Anne Condon published September 2002 in Theoretical Computer Science

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

scientific article

The complexity of stochastic games

scientific article (publication date: February 1992)

The complexity of string partitioning

scientific article published in May 2015

The determination of RNA folding nearest neighbor parameters

scientific article published on January 2014

Thermodynamically based DNA strand design.

scientific article

Two-sided matching with partial information

scholarly article published 2013

Will biologists become computer scientists? A truly interdisciplinary effort by computer scientists and biologists to understand how cells process information may yield new insights for both fields

scientific article published on 30 July 2018

densityCut: an efficient and versatile topological approach for automatic clustering of biological data

scientific article

List of works by Anne Condon

A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures

A new algorithm for RNA secondary structure design

A thermodynamic approach to designing structure-free combinatorial DNA word sets.

AlignOT: An Optimal Transport Based Algorithm for Fast 3D Alignment With Applications to Cryogenic Electron Microscopy Density Maps

An O(n(5)) algorithm for MFE prediction of kissing hairpins and 4-chains in nucleic acids.

An algorithm for the energy barrier problem without pseudoknots and temporary arcs.

Analysis of energy-based algorithms for RNA secondary structure prediction

Approximate majority analyses using tri-molecular chemical reaction networks

Automata make antisense

Computational RNA secondary structure design: empirical complexity and improved methods

Computational approaches for RNA energy parameter estimation

Design of nucleic acid strands with long low-barrier folding pathways

Designed DNA molecules: principles and applications of molecular nanotechnology

Efficient parameter estimation for RNA secondary structure prediction

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data

Floodplain methylmercury biomagnification factor higher than that of the contiguous river (South River, Virginia USA) ⬇️

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

Improved free energy parameters for RNA pseudoknotted secondary structure prediction

Initial association of NR2E1 with bipolar disorder and identification of candidate mutations in bipolar disorder, schizophrenia, and aggression through resequencing

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

Less haste, less waste: on recycling and its limits in strand displacement systems

Molecular programming: DNA and the brain

Novel and efficient RNA secondary structure prediction using hierarchical folding

Parsing nucleic acid pseudoknotted secondary structure: algorithm and applications.

RNA STRAND: the RNA secondary structure and statistical analysis database

RNAsoft: A suite of RNA secondary structure prediction and design software tools ⬇️

Random Debaters and the Hardness of Approximating Stochastic Functions

Reachability bounds for chemical reaction networks and strand displacement systems

Reasoning about optimal stable matchings under partial information

Revenue monotonicity in combinatorial auctions

Revenue monotonicity in deterministic, dominant-strategy combinatorial auctions

Secondary structure prediction of interacting RNA molecules

Stepwise Randomized Combinatorial Auctions Achieve Revenue Monotonicity

Strand design for biomolecular computation

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

The complexity of stochastic games

The complexity of string partitioning

The determination of RNA folding nearest neighbor parameters

Thermodynamically based DNA strand design.

Two-sided matching with partial information

Will biologists become computer scientists? A truly interdisciplinary effort by computer scientists and biologists to understand how cells process information may yield new insights for both fields

densityCut: an efficient and versatile topological approach for automatic clustering of biological data