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List of works by Anika Winkler

A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production

scientific article published on 2 May 2017

A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani

scientific article published on 10 May 2019

Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.

scientific article

Binning enables efficient host genome reconstruction in cnidarian holobionts

Biodegradation of dispersed oil in seawater is not inhibited by a commercial oil spill dispersant

scientific article published on 24 October 2017

Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.

scientific article

Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing

scientific article

Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green Microalga Botryococcus braunii Race B (Showa)

scientific article

Complete Draft Genome Sequence of Escherichia coli JF733

scientific article

Complete Draft Genome Sequence of Escherichia coli K802

scientific article published on 28 September 2017

Complete Draft Genome Sequence of Escherichia coli KRX, a Strain for Efficient Cloning and High-Yield Expression of Proteins under Control of the T7 RNA Polymerase

scientific article published on 28 September 2017

Complete Genome Sequence of Acinetobacter baumannii CIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses

scientific article published on 30 July 2015

Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis

scientific article

Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA

scientific article

Complete Genome Sequence of Herbinix luporum SD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor

scientific article

Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly "Streptomyces aureofaciens CCM 3239"), a Producer of the Angucycline-Type Antibiotic Auricin.

scientific article

Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974T (ATCC 19319T).

scientific article published on December 2016

Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase Gene blaNDM-1.

scientific article published on 10 September 2015

Complete Genome Sequence of the Methanogen Methanoculleus bourgensis BA1 Isolated from a Biogas Reactor.

scientific article

Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus.

scientific article

Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis

scientific article published on 10 September 2015

Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise

scientific article published on 30 July 2015

Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph

article by Marta Irla et al published October 2014 in Journal of Biotechnology

Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules

scientific article published on 22 July 2015

Complete genome sequence of Streptomyces lividans TK24.

scientific article published on 11 February 2015

Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid

scientific article published on 9 December 2014

Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge

scientific article published on 20 December 2016

Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant

scientific article published on 28 August 2014

Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MF(T.).

scientific article published on 28 September 2014

Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant

scientific article published on 20 March 2015

Complete genome sequencing of Acinetobacter baumannii str. K50 disclosed the large conjugative plasmid pK50a encoding the carbapenemase OXA-23 and the extended-spectrum β-lactamase GES-11.

scientific article published on 20 February 2018

Complete mitochondrial genome of the scleractinian coral Porites rus.

scientific article

Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant" [J. Biotechnol. 188 (2014) 136-137].

scientific article published on 15 September 2016

Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes

scientific article

Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV

scientific article

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant

scientific article published on 30 July 2015

Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans

scientific article

Draft Genome Sequence of Donghicola sp. Strain KarMa, a Model Organism for Monomethylamine-Degrading Nonmethylotrophic Bacteria

scientific article published on 16 February 2017

Draft Genome Sequence of Propionispora sp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor

scientific article published on 23 June 2016

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum

scientific article published on 2 July 2015

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS394, a Multidrug-Resistant and Highly Cytotoxic Wound Isolate from Chronic Ulcus Cruris.

scientific article published on 18 December 2014

Draft Genome Sequence of the Vaccination Strain Mycobacterium bovis BCG S4-Jena

scientific article

Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951).

scientific article published on 9 April 2015

Draft genome sequence of Herbinix hemicellulosilytica T3/55 T, a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor.

scientific article published on 4 August 2015

Draft genome sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis

scientific article

Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential

scientific article published on 18 July 2015

Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.

scientific article published on 19 August 2013

First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant

scientific article published on 28 September 2014

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics

scientific article published on 09 August 2019

Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T

scientific article published on 26 January 2017

Genome Sequence of the Urethral Catheter Isolate Pseudomonas aeruginosa MH19.

scientific article published on 12 March 2015

Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation

scientific article published on 26 October 2020

Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste

scientific article published on 16 February 2017

Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress

scientific article published on 21 November 2020

Harvest of the Oleaginous Microalgae by Flocculation From Culture Based on Natural Water Sources

article

Highly efficient methane generation from untreated microalgae biomass

scientific article published on 17 July 2017

Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales

scientific article published on 12 October 2016

Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system

scientific article

Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing

scientific article published on 27 December 2017

Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization

scientific article

Intraspecies Transfer of the Chromosomal Acinetobacter baumannii blaNDM-1 Carbapenemase Gene

scientific article published on 7 March 2016

Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity

scientific article published on 16 February 2016

Isolation and whole genome analysis of endospore-forming bacteria from heroin

scientific article published on 4 October 2017

Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin

scientific article published on 21 June 2017

Microbial communities in seawater from an Arctic and a temperate Norwegian fjord and their potentials for biodegradation of chemically dispersed oil at low seawater temperatures

scientific article published on 23 March 2018

Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing

scientific article published on 13 December 2016

Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis

article

On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2.

scientific article published on 23 February 2018

Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha

scientific article published in 2019

Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes

scientific article published on 5 January 2016

The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.).

scientific article

The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry ⬇️

scientific article published on 20 February 2018

Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation

scientific article

Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare.

scientific article published on 30 July 2015

Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia

scientific article published on 22 August 2019

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