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List of works by Maria C. Fookes

A simple method for directional transcriptome sequencing using Illumina technology

scientific article

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

scientific article

An H-NS-like stealth protein aids horizontal DNA transmission in bacteria

scientific article published in January 2007

Analysis of the hypervariable region of the Salmonella enterica genome associated with tRNA(leuX).

scientific article published on April 2005

Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

scientific article published on 10 October 2008

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

scientific article published in April 2011

Clinically relevant mutant DNA gyrase alters supercoiling, changes the transcriptome, and confers multidrug resistance.

scientific article published on 23 July 2013

Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7.

scientific article

Correction: Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation

scientific article published on 11 May 2016

Diagnostics for yaws eradication: insights from direct next generation sequencing of cutaneous strains of Treponema pallidum.

scientific article published on 16 October 2017

Direct Whole-Genome Sequencing of Cutaneous Strains of Haemophilus ducreyi.

scientific article

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

scientific article published on 22 August 2016

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

scientific article (publication date: 2013)

Dynamics of cholera epidemics from Benin to Mauritania

scientific article published on 9 April 2018

Elucidation of the RamA regulon in Klebsiella pneumoniae reveals a role in LPS regulation

scientific article

Epidemic multidrug-resistant (MDR-AmpC) Salmonella enterica serovar Newport strains contain three phage regions and a MDR resistance plasmid

scientific article published on 24 November 2009

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

scientific article published in March 2017

Functional analysis of Salmonella Typhi adaptation to survival in water

scientific article published on 01 November 2018

Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs

scientific article published on 30 April 2020

Genome Sequence of Klebsiella pneumoniae Ecl8, a Reference Strain for Targeted Genetic Manipulation

scientific article published on 31 January 2013

Genomic Comparison of the Closely Related Salmonella enterica Serovars Enteritidis and Dublin

scientific article published on 10 February 2012

Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates

scientific article

Genomic characterisation of invasive non-typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans isolates from Malawi ⬇️

scientific article

Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray.

scientific article published on December 2005

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

scientific article published on 29 June 2018

Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

scientific article published on 28 December 2017

Parallel independent evolution of pathogenicity within the genus Yersinia

scientific article

Patterns of genome evolution that have accompanied host adaptation in Salmonella

scientific article

Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates

scientific article published on 23 May 2007

RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri

scientific article

Roary: rapid large-scale prokaryote pan genome analysis

scientific article

Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene

scientific article published on 03 August 2016

Salmonella Typhi sense host neuroendocrine stress hormones and release the toxin haemolysin E

scientific article

Salmonella bongori provides insights into the evolution of the Salmonellae

scientific article published in August 2011

Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae

scientific article published on 13 January 2012

The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella

scientific article published on 20 December 2011

The Type III Secretion System Effector SeoC of Salmonella enterica subsp. salamae and S. enterica subsp. arizonae ADP-Ribosylates Src and Inhibits Opsonophagocytosis

scientific article published on 10 October 2016

The role of prophage-like elements in the diversity of Salmonella enterica serovars

scientific article published in May 2004

The secondary resistome of multidrug-resistant Klebsiella pneumoniae

scientific article

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

scientific article

Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities

scientific article

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

scientific article

Whole genome analysis to detect potential vaccine-induced changes on Shigella sonnei genome.

scientific article published on 30 April 2015

Whole genome sequence of Vibrio cholerae directly from dried spotted filter paper.

scientific article

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