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List of works by Kathleen M. Jagodnik

An optimized proportional-derivative controller for the human upper extremity with gravity

scientific article

Application of the Actor-Critic Architecture to Functional Electrical Stimulation Control of a Human Arm.

scientific article published on January 2009

Appyters: Turning Jupyter Notebooks into data-driven web apps

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

scientific article published on 01 July 2019

Correcting under-reported COVID-19 case numbers

scientific article (preprint)

Creating a Reinforcement Learning Controller for Functional Electrical Stimulation of a Human Arm

article

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

scientific article published on 13 November 2017

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

scientific article published on 27 February 2018

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

scientific article

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

article

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

scientific article published on 19 February 2022

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

scholarly article by Eryk Kropiwnicki et al published 31 March 2021 in Database

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

scientific article

EnrichrBot: Twitter Bot Tracking Tweets About Human Genes

scientific article published on 11 April 2020

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.

scientific article published on 26 September 2016

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

scientific article published on 30 October 2019

GEN3VA: aggregation and analysis of gene expression signatures from related studies

scientific article (publication date: 15 November 2016)

Gene Set Knowledge Discovery with Enrichr

scientific article published on 01 March 2021

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

scholarly article published 14 September 2017

Massive mining of publicly available RNA-seq data from human and mouse

scientific article published on 10 April 2018

Optimization and evaluation of a proportional derivative controller for planar arm movement

scientific article published on 25 January 2010

Prioritizing Pain-Associated Targets with Machine Learning

scientific article published on 20 February 2021

Role-Aware Information Spread in Online Social Networks

scientific article published on 19 November 2021

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.

scientific article published on 19 June 2018

The COVID-19 Drug and Gene Set Library

scientific article published on 25 July 2020

The COVID-19 Gene and Drug Set Library

scientific article published on 13 May 2020

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

scientific article published on 24 November 2017

The SmartAPI Ecosystem for Making Web APIs FAIR

scientific article published in proceedings of the iswc 2017 posters & demonstrations and industry tracks

Training an Actor-Critic Reinforcement Learning Controller for Arm Movement Using Human-Generated Rewards

scientific article published on 2 May 2017

smartAPI: Towards a More Intelligent Network of Web APIs

scientific article published in 2017

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