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List of works by Satoru Miyano

A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures

scientific article

A greedy strategy for finding motifs from yes-no examples ⬇️

scientific article published on January 1, 1996

A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development ⬇️

scientific article published on July 23, 2012

A novel genetic and morphologic phenotype of ARID2-mediated myelodysplasia

scientific article published on 3 November 2017

A rank-based statistical test for measuring synergistic effects between two gene sets ⬇️

scientific article published on June 23, 2011

A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition.

scientific article

A string pattern regression algorithm and its application to pattern discovery in long introns

scientific article published on January 1, 2002

A tutorial to identify nonlinear associations in gene expression time series data

scientific article

ACTN1 mutations cause congenital macrothrombocytopenia

scientific article

AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction

scientific article published on 18 January 2007

Abnormal hematopoiesis and autoimmunity in human subjects with germline IKZF1 mutations

scientific article published in December 2016

Acquired initiating mutations in early hematopoietic cells of CLL patients

scientific article

Advances in Bioinformatics and Computational Biology: 5th Brazilian Symposium on Bioinformatics, BSB 2010, Rio de Janeiro, Brazil, August 31-September 3, 2010. Proceedings

5th Brazilian Symposium on Bioinformatics, BSB 2010, Rio de Janeiro, Brazil, August 31-September 3, 2010. Proceedings

An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma

scientific article published on 14 October 2015

An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data

scientific article

An efficient grid layout algorithm for biological networks utilizing various biological attributes

scientific article

An efficient method of exploring simulation models by assimilating literature and biological observational data

scientific article

An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data

scientific article

Analysis of questionnaire for traditional medicine and development of decision support system

scientific article published on 29 January 2014

ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles

scientific article

Association of a single-nucleotide polymorphism in the immunoglobulin mu-binding protein 2 gene with immunoglobulin A nephropathy

scientific article

Automatic drawing of biological networks using cross cost and subcomponent data

scientific article published in January 2005

BONSAI Garden: parallel knowledge discovery system for amino acid sequences

scientific article published on January 1, 1995

Bayesian learning of biological pathways on genomic data assimilation

scientific article

CSO validator: improving manual curation workflow for biological pathways ⬇️

scientific article published on 08 July 2011

Cell Illustrator 4.0: A Computational Platform for Systems Biology ⬇️

scientific article published on January 1, 2010

Cell cycle gene networks are associated with melanoma prognosis

scientific article

Cell illustrator 4.0: a computational platform for systems biology

scientific article published on January 1, 2011

Cell-lineage level-targeted sequencing to identify acute myeloid leukemia with myelodysplasia-related changes

scientific article published on 01 October 2018

Characterization of the T cell repertoire by deep T cell receptor sequencing in tissues and blood from patients with advanced colorectal cancer

scientific article published on 19 April 2016

ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs ⬇️

scientific article published on October 30, 2012

Circulating Tumor DNA Analysis for Liver Cancers and Its Usefulness as a Liquid Biopsy

scientific article published on 17 June 2015

Clinical and genetic features of dyskeratosis congenita, cryptic dyskeratosis congenita, and Hoyeraal-Hreidarsson syndrome in Japan

scientific article published on 2 September 2015

Clinical significance of T cell clonality and expression levels of immune-related genes in endometrial cancer

scientific article

Clinical utility of next-generation sequencing for inherited bone marrow failure syndromes.

scientific article published on 19 January 2017

Collocation-based sparse estimation for constructing dynamic gene networks

scientific article published on January 1, 2010

Common Variable Immunodeficiency Caused by FANC Mutations

scientific article

Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR

scientific article published on January 1, 2010

Does Twitter Trigger Bursts in Signature Collections? ⬇️

scientific article published on March 6, 2013

Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data

scientific article

Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs

scientific article

Enhancement of collective immunity in Tokyo metropolitan area by selective vaccination against an emerging influenza pandemic.

scientific article

Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers

scientific article published on 11 October 2021

Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma

scientific article

Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection

scientific article

Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data

scientific article published in September 2005

Exome sequencing identified RPS15A as a novel causative gene for Diamond-Blackfan anemia

scientific article published on December 2016

ExonMiner: Web service for analysis of GeneChip Exon array data

scientific article

Extension and verification of the SEIR model on the 2009 influenza A (H1N1) pandemic in Japan.

scientific article

Frequent mutations in HLA and related genes in extranodal NK/T cell lymphomas

scientific article published on 23 September 2020

Frequent pathway mutations of splicing machinery in myelodysplasia

scientific article (publication date: 11 September 2011)

Frequent somatic mutations in epigenetic regulators in newly diagnosed chronic myeloid leukemia

scientific article

Functional clustering of time series gene expression data by Granger causality

scientific article

Gene expression and risk of leukemic transformation in myelodysplasia

scientific article

Gene regulatory network clustering for graph layout based on microarray gene expression data

scientific article published on January 1, 2010

Genetic basis of myeloid transformation in familial platelet disorder/acute myeloid leukemia patients with haploinsufficient RUNX1 allele

scientific article published on 5 February 2016

Genome-wide screening of DNA methylation associated with lymph node metastasis in esophageal squamous cell carcinoma

scientific article

Genomic Heterogeneity Within Individual Prostate Cancer Foci Impacts Predictive Biomarkers of Targeted Therapy

scientific article published in February 2018

Genomic analysis of clonal origin of Langerhans cell histiocytosis following acute lymphoblastic leukaemia

scientific article published on 5 November 2015

Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data.

scientific article

Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks

scientific article

Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data.

scientific article

Global gene network exploration based on explainable artificial intelligence approach

scientific article published on 06 November 2020

Global implementation of genomic medicine: We are not alone

scientific article

Haploinsufficiency of Sf3b1 leads to compromised stem cell function but not to myelodysplasia

scientific article published on 18 February 2014

Haploinsufficiency of TNFAIP3 (A20) by germline mutation is involved in autoimmune lymphoproliferative syndrome

scientific article published on 11 November 2016

High Performance Hybrid Functional Petri Net Simulations of Biological Pathway Models on CUDA ⬇️

scientific article published on November 1, 2011

INTRODUCTION — The First IEEE Conference on Healthcare Informatics, Imaging, and Systems biology HISB'11 ⬇️

scientific article published on 01 October 2011

IRView: a database and viewer for protein interacting regions ⬇️

scientific article published on May 15, 2012

Identification of RNA-Binding Protein LARP4B as a Tumor Suppressor in Glioma

scientific article

Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice.

scientific article

Identification of an immunogenic neo-epitope encoded by mouse sarcoma using CXCR3 ligand mRNAs as sensors

scientific article

Identification of novel adrenomedullin in mammals: a potent cardiovascular and renal regulator

scientific article (publication date: 2 January 2004)

Identification of the genetic and clinical characteristics of neuroblastomas using genome-wide analysis

scientific article published on 18 November 2017

Identifying drug active pathways from gene networks estimated by gene expression data.

scientific article

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.

scientific article

Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization

scientific article

Inferring gene networks from time series microarray data using dynamic Bayesian networks

scientific article

Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations

scientific article

Inherited and Somatic Defects in DDX41 in Myeloid Neoplasms

scientific journal article

Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution

scientific article

Integrated molecular analysis of adult T cell leukemia/lymphoma.

scientific article published on 5 October 2015

Integrated molecular analysis of clear-cell renal cell carcinoma

scientific article

Integrated molecular characterization of the lethal pediatric cancer pancreatoblastoma

scientific article

Intelligent system for topic survey in MEDLINE by keyword recommendation and learning text characteristics

scientific article published on 01 January 2000

International network of cancer genome projects

scientific article

Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14.

scientific article published on 4 September 2017

Loss of function mutations in RPL27 and RPS27 identified by whole-exome sequencing in Diamond-Blackfan anaemia.

scientific article

MIRACH: efficient model checker for quantitative biological pathway models ⬇️

scientific article published on January 5, 2011

MRG‐binding protein contributes to colorectal cancer development ⬇️

scientific article published on June 9, 2011

Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data.

scientific article

Modeling gene expression regulatory networks with the sparse vector autoregressive model

scientific article

Modeling nonlinear gene regulatory networks from time series gene expression data

scientific article

Molecular features of triple negative breast cancer cells by genome-wide gene expression profiling analysis ⬇️

scientific article published on December 18, 2012

Molecular studies reveal MLL-MLLT10/AF10 and ARID5B-MLL gene fusions displaced in a case of infantile acute lymphoblastic leukemia with complex karyotype

scientific article published on 20 June 2017

Multi-omics Approach for Estimating Metabolic Networks Using Low-Order Partial Correlations ⬇️

scientific article published on August 1, 2013

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates

scientific article

N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells ⬇️

scientific article published on August 8, 2011

On determining firing delay time of transitions for petri net based signaling pathways by introducing stochastic decision rules

scientific article published on January 1, 2011

Ontology-based instance data validation for high-quality curated biological pathways ⬇️

scientific article published on February 15, 2011

PIEZO1 gene mutation in a Japanese family with hereditary high phosphatidylcholine hemolytic anemia and hemochromatosis-induced diabetes mellitus

scientific article published on 14 March 2016

PRD: A protein–RNA interaction database ⬇️

scientific article published on August 3, 2012

Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study

scientific article

Prediction of transcriptional terminators in Bacillus subtilis and related species

scientific article

Prescription of kampo drugs in the Japanese health care insurance program

scientific article

Prognostic impact of circulating tumor DNA status post-allogeneic hematopoietic stem cell transplantation in AML and MDS

scientific article published on 01 April 2019

Prognostic relevance of genetic alterations in diffuse lower-grade gliomas

scientific article published on 18 July 2017

Quantitative characterization of T-cell repertoire in allogeneic hematopoietic stem cell transplant recipients

scientific article

RUNX1 mutations in pediatric acute myeloid leukemia are associated with distinct genetic features and an inferior prognosis

scientific article published on 14 March 2018

Recursive Random Lasso (RRLasso) for Identifying Anti-Cancer Drug Targets

scientific article

Requirement of glycosylation machinery in Toll-like receptor responses revealed by CRISPR/Cas9 screening

scientific article

Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker

scientific article

Sequence-specific bias correction for RNA-seq data using recurrent neural networks

scientific article

Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net

scientific article published on 01 January 2011

Somatic Mutations and Clonal Hematopoiesis in Aplastic Anemia

scientific article

Somatic PHF6 mutations in 1760 cases with various myeloid neoplasms

scientific article published on August 2016

Support of knowledge discovery by computational reasonings

scientific article published on 01 December 1997

Systematic reconstruction of TRANSPATH data into cell system markup language

scientific article

Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1.

scientific article

TERT promoter mutations and chromosome 8p loss are characteristic of nonalcoholic fatty liver disease-related hepatocellular carcinoma

scientific article published on 11 August 2016

Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells

scientific article published on January 2013

The AURKA/TPX2 axis drives colon tumorigenesis cooperatively with MYC.

scientific article published on 28 January 2015

The Difference between the Two Representative Kampo Formulas for Treating Dysmenorrhea: An Observational Study

scientific article

The first case of elderly TCF3-HLF-positive B-cell acute lymphoblastic leukemia

scientific article published on 06 May 2019

The hypusine cascade promotes cancer progression and metastasis through the regulation of RhoA in squamous cell carcinoma

scientific article published on 04 April 2016

The rs6983267 SNP Is Associated with MYC Transcription Efficiency, Which Promotes Progression and Worsens Prognosis of Colorectal Cancer ⬇️

scientific article published on September 14, 2012

Transcriptional profiling of hematopoietic stem cells by high-throughput sequencing

scientific article

Use of gene networks for identifying and validating drug targets

scientific article published in October 2003

Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades

scientific article

Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models.

scientific article

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

scientific article

Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators

scientific article

XiP: a computational environment to create, extend and share workflows.

scientific article

phyC: Clustering cancer evolutionary trees

scientific article

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