List of works - Wipapat Kladwang

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA

scientific article

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix

scientific article published in September 2010

A two-dimensional mutate-and-map strategy for non-coding RNA structure

scientific article

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

scientific article published on 02 July 2020

Allosteric Mechanism of theV. vulnificusAdenine Riboswitch Resolved by Four-dimensional Chemical Mapping

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping.

scientific article published on 15 February 2018

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling

scientific article published on 5 December 2011

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

scientific article published on 14 May 2020

Automated Design of Diverse Stand-Alone Riboswitches

scientific article published on 29 July 2019

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches

scientific article

Blind prediction of noncanonical RNA structure at atomic accuracy

Blind prediction of noncanonical RNA structure at atomic accuracy.

scientific article published on 25 May 2018

Blind tests of RNA nearest-neighbor energy prediction

scientific article

Compact RNA sensors for increasingly complex functions of multiple inputs

scientific article published on 16 January 2024

Computational design of three-dimensional RNA structure and function

scientific article published on 19 August 2019

Consistent global structures of complex RNA states through multidimensional chemical mapping

scientific article

Correction: Consistent global structures of complex RNA states through multidimensional chemical mapping

scientific article published on 21 July 2015

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular sensors

scientific article published on 16 December 2019

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches

Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome

scientific article

Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome

scientific article published on 20 July 2020

De novo 3D models of SARS-CoV-2 RNA elements and small-molecule-binding RNAs to guide drug discovery

scientific article published on 16 April 2020

De novo3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures

scientific article

HiTRACE: high-throughput robust analysis for capillary electrophoresis

scientific article published on 10 May 2011

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

scientific article

Hypersaline stress induces the turnover of phosphatidylcholine and results in the synthesis of the renal osmoprotectant glycerophosphocholine in Saccharomyces cerevisiae.

scientific article

Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol

scientific article

Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference

scientific article

RNA design rules from a massive open laboratory

scientific article

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation

scientific article

RNA structure inference through chemical mapping after accidental or intentional mutations

scientific article

RNA structure inference through chemical mapping after accidental or intentional mutations

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

scientific article published on 16 April 2015

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

scientific article

Standardization of RNA chemical mapping experiments

scientific article (publication date: 20 May 2014)

The mutate-and-map protocol for inferring base pairs in structured RNA.

scientific article

Ultraviolet shadowing of RNA can cause significant chemical damage in seconds

scientific article published on 18 July 2012

Understanding the errors of SHAPE-directed RNA structure modeling

scientific article

List of works by Wipapat Kladwang

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix

A two-dimensional mutate-and-map strategy for non-coding RNA structure

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

Allosteric Mechanism of theV. vulnificusAdenine Riboswitch Resolved by Four-dimensional Chemical Mapping

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping.

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

Automated Design of Diverse Stand-Alone Riboswitches

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches

Blind prediction of noncanonical RNA structure at atomic accuracy

Blind prediction of noncanonical RNA structure at atomic accuracy.

Blind tests of RNA nearest-neighbor energy prediction

Compact RNA sensors for increasingly complex functions of multiple inputs

Computational design of three-dimensional RNA structure and function

Consistent global structures of complex RNA states through multidimensional chemical mapping

Correction: Consistent global structures of complex RNA states through multidimensional chemical mapping

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular sensors

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches

Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome

Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome

De novo 3D models of SARS-CoV-2 RNA elements and small-molecule-binding RNAs to guide drug discovery

De novo3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures

HiTRACE: high-throughput robust analysis for capillary electrophoresis

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

Hypersaline stress induces the turnover of phosphatidylcholine and results in the synthesis of the renal osmoprotectant glycerophosphocholine in Saccharomyces cerevisiae.

Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol

Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference

RNA design rules from a massive open laboratory

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation

RNA structure inference through chemical mapping after accidental or intentional mutations

RNA structure inference through chemical mapping after accidental or intentional mutations

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Standardization of RNA chemical mapping experiments

The mutate-and-map protocol for inferring base pairs in structured RNA.

Ultraviolet shadowing of RNA can cause significant chemical damage in seconds

Understanding the errors of SHAPE-directed RNA structure modeling